RNA–Protein interactions for RNA: ENST00000560445.1

TPM1-223, Transcript of tropomyosin 1, human

TSL 3 BASIC

Gene TPM1, Length 485 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
TPM1-223	ENST00000560445	EIF4A1	P60842	406 aa	Known RBP	18.46	■□□□□ 0.55
TPM1-223	ENST00000560445	STYK1	Q6J9G0	422 aa		18.46	■□□□□ 0.55
TPM1-223	ENST00000560445	ZNF622	Q969S3	477 aa	Known RBP eCLIP	18.46	■□□□□ 0.55	6e-7	■■□□□ 13.8
TPM1-223	ENST00000560445	ERVV-1	B6SEH8	477 aa		18.45	■□□□□ 0.54
TPM1-223	ENST00000560445	C16orf71	Q8IYS4	520 aa	Predicted RBP	18.45	■□□□□ 0.54
TPM1-223	ENST00000560445	RUNDC1	Q96C34	613 aa		18.45	■□□□□ 0.54
TPM1-223	ENST00000560445	NYX	Q9GZU5	481 aa		18.45	■□□□□ 0.54
TPM1-223	ENST00000560445	MIS18A	Q9NYP9	233 aa		18.45	■□□□□ 0.54
TPM1-223	ENST00000560445	NIP7	Q9Y221	180 aa	Known RBP eCLIP	18.45	■□□□□ 0.54
TPM1-223	ENST00000560445	ANKRD31	Q8N7Z5	1873 aa		18.44	■□□□□ 0.54
TPM1-223	ENST00000560445	PRAMEF22	A3QJZ6	481 aa		18.44	■□□□□ 0.54
TPM1-223	ENST00000560445	NBPF26	B4DH59	902 aa		18.44	■□□□□ 0.54
TPM1-223	ENST00000560445	GTF2E1	P29083	439 aa	Predicted RBP	18.44	■□□□□ 0.54
TPM1-223	ENST00000560445	TMPO	P42166	694 aa	Known RBP	18.44	■□□□□ 0.54
TPM1-223	ENST00000560445	NBPF10	Q6P3W6	841 aa	Known RBP	18.44	■□□□□ 0.54
TPM1-223	ENST00000560445	NBPF15	Q8N660	670 aa		18.44	■□□□□ 0.54
TPM1-223	ENST00000560445	MASTL	Q96GX5	879 aa		18.44	■□□□□ 0.54
TPM1-223	ENST00000560445	PIP4K2A	P48426	406 aa	Predicted RBP	18.43	■□□□□ 0.54
TPM1-223	ENST00000560445	TNRC6C	Q9HCJ0	1690 aa	Known RBP	18.42	■□□□□ 0.54
TPM1-223	ENST00000560445	TOMM70	O94826	608 aa		18.42	■□□□□ 0.54
TPM1-223	ENST00000560445	THUMPD2	Q9BTF0	503 aa	Known RBP	18.42	■□□□□ 0.54
TPM1-223	ENST00000560445	MAP3K15	Q6ZN16	1313 aa		18.42	■□□□□ 0.54
TPM1-223	ENST00000560445	IBTK	Q9P2D0	1353 aa	Predicted RBP	18.42	■□□□□ 0.54
TPM1-223	ENST00000560445	SBF1	O95248	1867 aa		18.41	■□□□□ 0.54
TPM1-223	ENST00000560445	ARFGEF2	Q9Y6D5	1785 aa		18.41	■□□□□ 0.54
TPM1-223	ENST00000560445	KIF3C	O14782	793 aa		18.41	■□□□□ 0.54
TPM1-223	ENST00000560445	SRGN	P10124	158 aa		18.41	■□□□□ 0.54
TPM1-223	ENST00000560445	CALD1	Q05682	793 aa	Known RBP	18.41	■□□□□ 0.54
TPM1-223	ENST00000560445	PRKRIP1	Q9H875	184 aa	Predicted RBP	18.41	■□□□□ 0.54
TPM1-223	ENST00000560445	COL11A2	P13942	1736 aa	Predicted RBP	18.4	■□□□□ 0.54
TPM1-223	ENST00000560445	NPR1	P16066	1061 aa		18.4	■□□□□ 0.54
TPM1-223	ENST00000560445	RRP7A	Q9Y3A4	280 aa	Known RBP	18.4	■□□□□ 0.54
TPM1-223	ENST00000560445	LTBP3	Q9NS15	1303 aa		18.4	■□□□□ 0.54
TPM1-223	ENST00000560445	HSPA6	P17066	643 aa		18.39	■□□□□ 0.53
TPM1-223	ENST00000560445	TAOK3	Q9H2K8	898 aa		18.39	■□□□□ 0.53
TPM1-223	ENST00000560445	MYL6B	P14649	208 aa		18.38	■□□□□ 0.53
TPM1-223	ENST00000560445	ALDH1B1	P30837	517 aa		18.38	■□□□□ 0.53
TPM1-223	ENST00000560445	DPY19L2	Q6NUT2	758 aa		18.38	■□□□□ 0.53
TPM1-223	ENST00000560445	PRPF40B	Q6NWY9	871 aa	Known RBP	18.38	■□□□□ 0.53
TPM1-223	ENST00000560445	RBM46	Q8TBY0	533 aa	Known RBP	18.38	■□□□□ 0.53
TPM1-223	ENST00000560445	C21orf2	O43822	256 aa		18.37	■□□□□ 0.53
TPM1-223	ENST00000560445	HOXB7	P09629	217 aa		18.37	■□□□□ 0.53
TPM1-223	ENST00000560445	RASSF7	Q02833	373 aa		18.37	■□□□□ 0.53
TPM1-223	ENST00000560445	PARP10	Q53GL7	1025 aa		18.37	■□□□□ 0.53
TPM1-223	ENST00000560445	HSP90AB3P	Q58FF7	597 aa		18.37	■□□□□ 0.53
TPM1-223	ENST00000560445	NGEF	Q8N5V2	710 aa		18.37	■□□□□ 0.53
TPM1-223	ENST00000560445	CHMP4A	Q9BY43	222 aa		18.37	■□□□□ 0.53
TPM1-223	ENST00000560445	RIC1	Q4ADV7	1423 aa		18.37	■□□□□ 0.53
TPM1-223	ENST00000560445	TIAM2	Q8IVF5	1701 aa		18.37	■□□□□ 0.53
TPM1-223	ENST00000560445	KLRG2	A4D1S0	409 aa	Predicted RBP	18.36	■□□□□ 0.53
TPM1-223	ENST00000560445	NUP98	P52948	1817 aa		18.36	■□□□□ 0.53
TPM1-223	ENST00000560445	NEUROD2	Q15784	382 aa		18.36	■□□□□ 0.53
TPM1-223	ENST00000560445	CCDC93	Q567U6	631 aa		18.36	■□□□□ 0.53
TPM1-223	ENST00000560445	RNF123	Q5XPI4	1314 aa		18.36	■□□□□ 0.53
TPM1-223	ENST00000560445	PPP1R42	Q7Z4L9	355 aa		18.36	■□□□□ 0.53
TPM1-223	ENST00000560445	CCDC146	Q8IYE0	955 aa		18.36	■□□□□ 0.53
TPM1-223	ENST00000560445	NMRK2	Q9NPI5	230 aa		18.36	■□□□□ 0.53
TPM1-223	ENST00000560445	FER1L6	Q2WGJ9	1857 aa		18.35	■□□□□ 0.53
TPM1-223	ENST00000560445	NFKBIE	O00221	500 aa		18.35	■□□□□ 0.53
TPM1-223	ENST00000560445	FSTL1	Q12841	308 aa		18.35	■□□□□ 0.53
TPM1-223	ENST00000560445	GRIPAP1	Q4V328	841 aa		18.35	■□□□□ 0.53
TPM1-223	ENST00000560445	CCDC24	Q8N4L8	307 aa		18.35	■□□□□ 0.53
TPM1-223	ENST00000560445	ADAMTS8	Q9UP79	889 aa		18.35	■□□□□ 0.53
TPM1-223	ENST00000560445	GLTPD2	A6NH11	291 aa		18.34	■□□□□ 0.53
TPM1-223	ENST00000560445	CHL1	O00533	1208 aa		18.34	■□□□□ 0.53
TPM1-223	ENST00000560445	EIF2S2	P20042	333 aa	Known RBP	18.34	■□□□□ 0.53
TPM1-223	ENST00000560445	APLP1	P51693	650 aa		18.34	■□□□□ 0.53
TPM1-223	ENST00000560445	HLF	Q16534	295 aa		18.34	■□□□□ 0.53
TPM1-223	ENST00000560445	ERFE	Q4G0M1	354 aa		18.34	■□□□□ 0.53
TPM1-223	ENST00000560445	GIGYF2	Q6Y7W6	1299 aa	Known RBP	18.34	■□□□□ 0.53
TPM1-223	ENST00000560445	RTKN2	Q8IZC4	609 aa		18.34	■□□□□ 0.53
TPM1-223	ENST00000560445	DICER1	Q9UPY3	1922 aa	Known RBP	18.33	■□□□□ 0.53
TPM1-223	ENST00000560445	CACNA1S	Q13698	1873 aa		18.33	■□□□□ 0.53
TPM1-223	ENST00000560445	FAM177B	A6PVY3	158 aa		18.33	■□□□□ 0.52
TPM1-223	ENST00000560445	VEGFA	P15692	232 aa	Predicted RBP	18.33	■□□□□ 0.52
TPM1-223	ENST00000560445	CC2D2B	Q6DHV5	1058 aa		18.33	■□□□□ 0.52
TPM1-223	ENST00000560445	RPGR	Q92834	1020 aa	Known RBP	18.33	■□□□□ 0.52
TPM1-223	ENST00000560445	TMX4	Q9H1E5	349 aa	Predicted RBP	18.33	■□□□□ 0.52
TPM1-223	ENST00000560445	ZBTB3	Q9H5J0	574 aa		18.33	■□□□□ 0.52
TPM1-223	ENST00000560445	CCDC88A	Q3V6T2	1871 aa		18.33	■□□□□ 0.52
TPM1-223	ENST00000560445	TTLL7	Q6ZT98	887 aa		18.32	■□□□□ 0.52
TPM1-223	ENST00000560445	CFAP44	Q96MT7	982 aa		18.32	■□□□□ 0.52
TPM1-223	ENST00000560445	ZNF219	Q9P2Y4	722 aa	Predicted RBP	18.32	■□□□□ 0.52
TPM1-223	ENST00000560445	LAS1L	Q9Y4W2	734 aa	Known RBP	18.32	■□□□□ 0.52
TPM1-223	ENST00000560445	SLX4	Q8IY92	1834 aa		18.32	■□□□□ 0.52
TPM1-223	ENST00000560445	SMC1B	Q8NDV3	1235 aa		18.31	■□□□□ 0.52
TPM1-223	ENST00000560445	DDX21	Q9NR30	783 aa	Known RBP eCLIP	18.31	■□□□□ 0.52
TPM1-223	ENST00000560445	CRY2	Q49AN0	593 aa		18.3	■□□□□ 0.52
TPM1-223	ENST00000560445	ZNF34	Q8IZ26	560 aa		18.3	■□□□□ 0.52
TPM1-223	ENST00000560445	RRAGC	Q9HB90	399 aa		18.3	■□□□□ 0.52
TPM1-223	ENST00000560445	TRIM35	Q9UPQ4	493 aa		18.3	■□□□□ 0.52
TPM1-223	ENST00000560445	GPT	P24298	496 aa		18.29	■□□□□ 0.52
TPM1-223	ENST00000560445	GNAI1	P63096	354 aa		18.29	■□□□□ 0.52
TPM1-223	ENST00000560445	FKBP4	Q02790	459 aa	Known RBP eCLIP	18.29	■□□□□ 0.52
TPM1-223	ENST00000560445	HDGFL1	Q5TGJ6	251 aa		18.29	■□□□□ 0.52
TPM1-223	ENST00000560445	RBM17	Q96I25	401 aa	Known RBP	18.29	■□□□□ 0.52
TPM1-223	ENST00000560445	UTP14A	Q9BVJ6	771 aa	Known RBP	18.29	■□□□□ 0.52
TPM1-223	ENST00000560445	DBF4	Q9UBU7	674 aa	Predicted RBP	18.29	■□□□□ 0.52
TPM1-223	ENST00000560445	ANKRD36C	Q5JPF3	1778 aa		18.28	■□□□□ 0.52
TPM1-223	ENST00000560445	NLRP3	Q96P20	1036 aa		18.28	■□□□□ 0.52

Retrieved 100 of 20,778 RNA–protein pairs in 25.1 ms