RNA–Protein interactions for RNA: ENST00000560260.5

SNX1-210, Transcript of sorting nexin 1, humanhuman

TSL 1 (best)

Gene SNX1, Length 1,326 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNX1-210ENST00000560260 CHMP4AQ9BY43 222 aa27.98■■■□□ 2.07
SNX1-210ENST00000560260 MAP3K15Q6ZN16 1313 aa27.98■■■□□ 2.07
SNX1-210ENST00000560260 CACNA1FO60840 1977 aa27.97■■■□□ 2.07
SNX1-210ENST00000560260 SLC4A2P04920 1241 aa27.97■■■□□ 2.07
SNX1-210ENST00000560260 PTGER2P43116 358 aa27.97■■■□□ 2.07
SNX1-210ENST00000560260 HLFQ16534 295 aa27.97■■■□□ 2.07
SNX1-210ENST00000560260 ZBTB3Q9H5J0 574 aa27.97■■■□□ 2.07
SNX1-210ENST00000560260 NUP98P52948 1817 aa27.97■■■□□ 2.07
SNX1-210ENST00000560260 ARFGEF2Q9Y6D5 1785 aa27.97■■■□□ 2.07
SNX1-210ENST00000560260 CT47B1P0C2W7 299 aaPredicted RBP27.96■■■□□ 2.07
SNX1-210ENST00000560260 KIF6Q6ZMV9 814 aa27.96■■■□□ 2.07
SNX1-210ENST00000560260 SSH1Q8WYL5 1049 aa27.96■■■□□ 2.07
SNX1-210ENST00000560260 LRP5O75197 1615 aa27.96■■■□□ 2.07
SNX1-210ENST00000560260 BCL2L13Q9BXK5 485 aa27.94■■■□□ 2.06
SNX1-210ENST00000560260 ERVV-1B6SEH8 477 aa27.93■■■□□ 2.06
SNX1-210ENST00000560260 TBC1D9BQ66K14 1250 aa27.93■■■□□ 2.06
SNX1-210ENST00000560260 MRPL50Q8N5N7 158 aaKnown RBP27.93■■■□□ 2.06
SNX1-210ENST00000560260 SPON1Q9HCB6 807 aa27.93■■■□□ 2.06
SNX1-210ENST00000560260 DDR1Q08345 913 aa27.92■■■□□ 2.06
SNX1-210ENST00000560260 NLGN1Q8N2Q7 840 aa27.92■■■□□ 2.06
SNX1-210ENST00000560260 ZNF428Q96B54 188 aa27.92■■■□□ 2.06
SNX1-210ENST00000560260 ANKRD36CQ5JPF3 1778 aa27.92■■■□□ 2.06
SNX1-210ENST00000560260 SRCAPQ6ZRS2 3230 aa27.92■■■□□ 2.06
SNX1-210ENST00000560260 MMP10P09238 476 aa27.92■■■□□ 2.06
SNX1-210ENST00000560260 TM4SF1P30408 202 aa27.92■■■□□ 2.06
SNX1-210ENST00000560260 RARSP54136 660 aaKnown RBP27.92■■■□□ 2.06
SNX1-210ENST00000560260 FLIIQ13045 1269 aa27.92■■■□□ 2.06
SNX1-210ENST00000560260 NFIXQ14938 502 aa27.92■■■□□ 2.06
SNX1-210ENST00000560260 ATP10DQ9P241 1426 aa27.91■■■□□ 2.06
SNX1-210ENST00000560260 ADCY9O60503 1353 aa27.91■■■□□ 2.06
SNX1-210ENST00000560260 RGL2O15211 777 aa27.91■■■□□ 2.06
SNX1-210ENST00000560260 ALDH1L2Q3SY69 923 aa27.91■■■□□ 2.06
SNX1-210ENST00000560260 PLBD2Q8NHP8 589 aa27.91■■■□□ 2.06
SNX1-210ENST00000560260 CLEC4GQ6UXB4 293 aa27.9■■■□□ 2.06
SNX1-210ENST00000560260 GIGYF2Q6Y7W6 1299 aaKnown RBP27.9■■■□□ 2.06
SNX1-210ENST00000560260 BICDL1Q6ZP65 573 aa27.89■■■□□ 2.05
SNX1-210ENST00000560260 ANKRD13DQ6ZTN6 518 aa27.89■■■□□ 2.05
SNX1-210ENST00000560260 SMC4Q9NTJ3 1288 aa27.89■■■□□ 2.05
SNX1-210ENST00000560260 ZNF652Q9Y2D9 606 aa27.89■■■□□ 2.05
SNX1-210ENST00000560260 NRXN2Q9P2S2 1712 aa27.88■■■□□ 2.05
SNX1-210ENST00000560260 AFDNP55196 1824 aaKnown RBP27.88■■■□□ 2.05
SNX1-210ENST00000560260 POLRMTO00411 1230 aaKnown RBP27.88■■■□□ 2.05
SNX1-210ENST00000560260 UBN2Q6ZU65 1347 aa27.86■■■□□ 2.05
SNX1-210ENST00000560260 PI4KAP2A4QPH2 592 aa27.85■■■□□ 2.05
SNX1-210ENST00000560260 POLD1P28340 1107 aa27.85■■■□□ 2.05
SNX1-210ENST00000560260 FKBP5Q13451 457 aaPredicted RBP27.85■■■□□ 2.05
SNX1-210ENST00000560260 PI4KAP1Q8N8J0 262 aa27.85■■■□□ 2.05
SNX1-210ENST00000560260 CARMIL3Q8ND23 1372 aa27.84■■■□□ 2.05
SNX1-210ENST00000560260 GPTP24298 496 aa27.84■■■□□ 2.05
SNX1-210ENST00000560260 KSR2Q6VAB6 950 aa27.84■■■□□ 2.05
SNX1-210ENST00000560260 RIC3Q7Z5B4 369 aa27.84■■■□□ 2.05
SNX1-210ENST00000560260 ZNF34Q8IZ26 560 aa27.84■■■□□ 2.05
SNX1-210ENST00000560260 NIP7Q9Y221 180 aaKnown RBP eCLIP27.84■■■□□ 2.05
SNX1-210ENST00000560260 MAP3K2Q9Y2U5 619 aa27.84■■■□□ 2.05
SNX1-210ENST00000560260 BCAR3O75815 825 aa27.83■■■□□ 2.05
SNX1-210ENST00000560260 DDX58O95786 925 aaKnown RBP27.83■■■□□ 2.05
SNX1-210ENST00000560260 TCIRG1Q13488 830 aa27.83■■■□□ 2.05
SNX1-210ENST00000560260 BRPF1P55201 1214 aaPredicted RBP27.82■■■□□ 2.04
SNX1-210ENST00000560260 PARP3Q9Y6F1 533 aa27.82■■■□□ 2.04
SNX1-210ENST00000560260 F6X3S4 739 aa27.81■■■□□ 2.04
SNX1-210ENST00000560260 SETDB2Q96T68 719 aa27.81■■■□□ 2.04
SNX1-210ENST00000560260 ISCA1Q9BUE6 129 aa27.81■■■□□ 2.04
SNX1-210ENST00000560260 C10orf71Q711Q0 1435 aa27.8■■■□□ 2.04
SNX1-210ENST00000560260 ATP5J2-PTCD1G3V325 749 aa27.8■■■□□ 2.04
SNX1-210ENST00000560260 SERPINB2P05120 415 aa27.8■■■□□ 2.04
SNX1-210ENST00000560260 HSP90AB3PQ58FF7 597 aa27.8■■■□□ 2.04
SNX1-210ENST00000560260 MYD88Q99836 296 aa27.8■■■□□ 2.04
SNX1-210ENST00000560260 METTL22Q9BUU2 404 aaPredicted RBP27.8■■■□□ 2.04
SNX1-210ENST00000560260 SUSD4Q5VX71 490 aa27.78■■■□□ 2.04
SNX1-210ENST00000560260 DNAAF4Q8WXU2 420 aa27.78■■■□□ 2.04
SNX1-210ENST00000560260 KIF13BQ9NQT8 1826 aa27.78■■■□□ 2.04
SNX1-210ENST00000560260 FAM177BA6PVY3 158 aa27.77■■■□□ 2.04
SNX1-210ENST00000560260 IGKV5-2P06315 115 aa27.77■■■□□ 2.04
SNX1-210ENST00000560260 NLRP10Q86W26 655 aa27.77■■■□□ 2.04
SNX1-210ENST00000560260 NOB1Q9ULX3 412 aaKnown RBP27.77■■■□□ 2.04
SNX1-210ENST00000560260 PTPRCP08575 1304 aa27.77■■■□□ 2.04
SNX1-210ENST00000560260 NTSR2O95665 410 aa27.76■■■□□ 2.03
SNX1-210ENST00000560260 PRR5LQ6MZQ0 368 aa27.76■■■□□ 2.03
SNX1-210ENST00000560260 KIAA1551Q9HCM1 1747 aa27.76■■■□□ 2.03
SNX1-210ENST00000560260 IBTKQ9P2D0 1353 aaPredicted RBP27.76■■■□□ 2.03
SNX1-210ENST00000560260 ANKRD31Q8N7Z5 1873 aa27.76■■■□□ 2.03
SNX1-210ENST00000560260 CCDC24Q8N4L8 307 aa27.75■■■□□ 2.03
SNX1-210ENST00000560260 PARP10Q53GL7 1025 aa27.74■■■□□ 2.03
SNX1-210ENST00000560260 KIF16BQ96L93 1317 aa27.74■■■□□ 2.03
SNX1-210ENST00000560260 ABCC12Q96J65 1359 aa27.74■■■□□ 2.03
SNX1-210ENST00000560260 N4BP2Q86UW6 1770 aaPredicted RBP27.74■■■□□ 2.03
SNX1-210ENST00000560260 TRIM28Q13263 835 aaKnown RBP27.73■■■□□ 2.03
SNX1-210ENST00000560260 NBPF5PQ86XG9 351 aaPredicted RBP27.73■■■□□ 2.03
SNX1-210ENST00000560260 PPP1R1BQ9UD71 204 aaPredicted RBP27.73■■■□□ 2.03
SNX1-210ENST00000560260 RCAN3Q9UKA8 241 aa27.73■■■□□ 2.03
SNX1-210ENST00000560260 TNNQ9UQP3 1299 aa27.73■■■□□ 2.03
SNX1-210ENST00000560260 TNRC6CQ9HCJ0 1690 aaKnown RBP27.73■■■□□ 2.03
SNX1-210ENST00000560260 PXDNLA1KZ92 1463 aa27.72■■■□□ 2.03
SNX1-210ENST00000560260 CWF19L2Q2TBE0 894 aaKnown RBP27.72■■■□□ 2.03
SNX1-210ENST00000560260 CNBD1Q8NA66 436 aa27.72■■■□□ 2.03
SNX1-210ENST00000560260 BEND3Q5T5X7 828 aa27.71■■■□□ 2.03
SNX1-210ENST00000560260 NUTM1Q86Y26 1132 aa27.71■■■□□ 2.03
SNX1-210ENST00000560260 FHDC1Q9C0D6 1143 aaPredicted RBP27.71■■■□□ 2.03
SNX1-210ENST00000560260 NEURL1BA8MQ27 555 aa27.7■■■□□ 2.03
SNX1-210ENST00000560260 SYNE4Q8N205 404 aa27.69■■■□□ 2.02
Retrieved 100 of 20,778 RNA–protein pairs in 23.5 ms