RNA–Protein interactions for RNA: ENST00000559898.5

HDDC3-205, Transcript of HD domain containing 3, humanhuman

TSL 1 (best) BASIC

Gene HDDC3, Length 1,024 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDDC3-205ENST00000559898 NPM2Q86SE8 214 aaKnown RBP23.4■■□□□ 1.34
HDDC3-205ENST00000559898 TTLL6Q8N841 843 aa23.4■■□□□ 1.34
HDDC3-205ENST00000559898 PNISRQ8TF01 805 aaKnown RBP23.4■■□□□ 1.34
HDDC3-205ENST00000559898 ZNF622Q969S3 477 aaKnown RBP eCLIP23.4■■□□□ 1.34
HDDC3-205ENST00000559898 BRIP1Q9BX63 1249 aa23.4■■□□□ 1.34
HDDC3-205ENST00000559898 NMRK2Q9NPI5 230 aa23.4■■□□□ 1.34
HDDC3-205ENST00000559898 RNF181Q9P0P0 153 aa23.4■■□□□ 1.34
HDDC3-205ENST00000559898 MYL6BP14649 208 aa23.39■■□□□ 1.33
HDDC3-205ENST00000559898 CNBD1Q8NA66 436 aa23.39■■□□□ 1.33
HDDC3-205ENST00000559898 PNNQ9H307 717 aaKnown RBP23.39■■□□□ 1.33
HDDC3-205ENST00000559898 TSPYL4Q9UJ04 414 aa23.39■■□□□ 1.33
HDDC3-205ENST00000559898 TRIM35Q9UPQ4 493 aa23.39■■□□□ 1.33
HDDC3-205ENST00000559898 KRT24Q2M2I5 525 aa23.38■■□□□ 1.33
HDDC3-205ENST00000559898 TNRC6CQ9HCJ0 1690 aaKnown RBP23.38■■□□□ 1.33
HDDC3-205ENST00000559898 NFKBIEO00221 500 aa23.37■■□□□ 1.33
HDDC3-205ENST00000559898 ANXA1P04083 346 aa23.37■■□□□ 1.33
HDDC3-205ENST00000559898 NIP7Q9Y221 180 aaKnown RBP eCLIP23.37■■□□□ 1.33
HDDC3-205ENST00000559898 PROSER3Q2NL68 480 aa23.36■■□□□ 1.33
HDDC3-205ENST00000559898 CLEC4GQ6UXB4 293 aa23.36■■□□□ 1.33
HDDC3-205ENST00000559898 NBPF5PQ86XG9 351 aaPredicted RBP23.36■■□□□ 1.33
HDDC3-205ENST00000559898 FER1L6Q2WGJ9 1857 aa23.35■■□□□ 1.33
HDDC3-205ENST00000559898 C21orf2O43822 256 aa23.35■■□□□ 1.33
HDDC3-205ENST00000559898 PDE6BP35913 854 aa23.35■■□□□ 1.33
HDDC3-205ENST00000559898 CCDC184Q52MB2 194 aa23.35■■□□□ 1.33
HDDC3-205ENST00000559898 TIAM2Q8IVF5 1701 aa23.35■■□□□ 1.33
HDDC3-205ENST00000559898 ARFGEF2Q9Y6D5 1785 aa23.35■■□□□ 1.33
HDDC3-205ENST00000559898 PDIA6Q15084 440 aa23.34■■□□□ 1.33
HDDC3-205ENST00000559898 LRP10Q7Z4F1 713 aa23.34■■□□□ 1.33
HDDC3-205ENST00000559898 NECTIN2Q92692 538 aa23.34■■□□□ 1.33
HDDC3-205ENST00000559898 RUNDC1Q96C34 613 aa23.34■■□□□ 1.33
HDDC3-205ENST00000559898 NPHP1O15259 732 aa23.33■■□□□ 1.33
HDDC3-205ENST00000559898 SRGNP10124 158 aa23.33■■□□□ 1.33
HDDC3-205ENST00000559898 EIF2S2P20042 333 aaKnown RBP23.33■■□□□ 1.33
HDDC3-205ENST00000559898 ST5P78524 1137 aa23.33■■□□□ 1.33
HDDC3-205ENST00000559898 WDR43Q15061 677 aaKnown RBP eCLIP23.33■■□□□ 1.33
HDDC3-205ENST00000559898 ZBTB3Q9H5J0 574 aa23.33■■□□□ 1.33
HDDC3-205ENST00000559898 ABCC12Q96J65 1359 aa23.32■■□□□ 1.32
HDDC3-205ENST00000559898 ZNF652Q9Y2D9 606 aa23.32■■□□□ 1.32
HDDC3-205ENST00000559898 MAP3K15Q6ZN16 1313 aa23.32■■□□□ 1.32
HDDC3-205ENST00000559898 UBN2Q6ZU65 1347 aa23.32■■□□□ 1.32
HDDC3-205ENST00000559898 OLFM4Q6UX06 510 aa23.31■■□□□ 1.32
HDDC3-205ENST00000559898 NUTM1Q86Y26 1132 aa23.31■■□□□ 1.32
HDDC3-205ENST00000559898 GPTP24298 496 aa23.3■■□□□ 1.32
HDDC3-205ENST00000559898 SLC51AQ86UW1 340 aa23.3■■□□□ 1.32
HDDC3-205ENST00000559898 LAS1LQ9Y4W2 734 aaKnown RBP23.3■■□□□ 1.32
HDDC3-205ENST00000559898 PRPF40BQ6NWY9 871 aaKnown RBP23.29■■□□□ 1.32
HDDC3-205ENST00000559898 CEP350Q5VT06 3117 aa23.29■■□□□ 1.32
HDDC3-205ENST00000559898 CHL1O00533 1208 aa23.28■■□□□ 1.32
HDDC3-205ENST00000559898 STYK1Q6J9G0 422 aa23.28■■□□□ 1.32
HDDC3-205ENST00000559898 MASTLQ96GX5 879 aa23.28■■□□□ 1.32
HDDC3-205ENST00000559898 DICER1Q9UPY3 1922 aaKnown RBP23.27■■□□□ 1.32
HDDC3-205ENST00000559898 ERVV-1B6SEH8 477 aa23.27■■□□□ 1.32
HDDC3-205ENST00000559898 LMNB1P20700 586 aa23.27■■□□□ 1.32
HDDC3-205ENST00000559898 LMOD3Q0VAK6 560 aa23.27■■□□□ 1.32
HDDC3-205ENST00000559898 ERFEQ4G0M1 354 aa23.27■■□□□ 1.32
HDDC3-205ENST00000559898 RRAGCQ9HB90 399 aa23.27■■□□□ 1.32
HDDC3-205ENST00000559898 KLRG2A4D1S0 409 aaPredicted RBP23.26■■□□□ 1.31
HDDC3-205ENST00000559898 SUSD4Q5VX71 490 aa23.26■■□□□ 1.31
HDDC3-205ENST00000559898 TPTE2Q6XPS3 522 aa23.26■■□□□ 1.31
HDDC3-205ENST00000559898 KIF6Q6ZMV9 814 aa23.26■■□□□ 1.31
HDDC3-205ENST00000559898 RGL2O15211 777 aa23.25■■□□□ 1.31
HDDC3-205ENST00000559898 C3orf67Q6ZVT6 689 aa23.25■■□□□ 1.31
HDDC3-205ENST00000559898 ZNF34Q8IZ26 560 aa23.25■■□□□ 1.31
HDDC3-205ENST00000559898 C7orf43Q8WVR3 580 aa23.25■■□□□ 1.31
HDDC3-205ENST00000559898 CNKSR1Q969H4 720 aa23.25■■□□□ 1.31
HDDC3-205ENST00000559898 ZNF428Q96B54 188 aa23.25■■□□□ 1.31
HDDC3-205ENST00000559898 PDZRN3Q9UPQ7 1066 aa23.25■■□□□ 1.31
HDDC3-205ENST00000559898 APAF1O14727 1248 aa23.24■■□□□ 1.31
HDDC3-205ENST00000559898 HSPA6P17066 643 aa23.24■■□□□ 1.31
HDDC3-205ENST00000559898 BABAM1Q9NWV8 329 aa23.24■■□□□ 1.31
HDDC3-205ENST00000559898 GIGYF2Q6Y7W6 1299 aaKnown RBP23.23■■□□□ 1.31
HDDC3-205ENST00000559898 ERBB4Q15303 1308 aa23.23■■□□□ 1.31
HDDC3-205ENST00000559898 ANKRD36CQ5JPF3 1778 aa23.22■■□□□ 1.31
HDDC3-205ENST00000559898 NPR1P16066 1061 aa23.22■■□□□ 1.31
HDDC3-205ENST00000559898 AIMP1Q12904 312 aaKnown RBP23.22■■□□□ 1.31
HDDC3-205ENST00000559898 TOMM70O94826 608 aa23.21■■□□□ 1.31
HDDC3-205ENST00000559898 NTSR2O95665 410 aa23.21■■□□□ 1.31
HDDC3-205ENST00000559898 COPS6Q7L5N1 327 aa23.21■■□□□ 1.31
HDDC3-205ENST00000559898 XAGE3Q8WTP9 111 aa23.21■■□□□ 1.31
HDDC3-205ENST00000559898 POTECB2RU33 542 aa23.2■■□□□ 1.3
HDDC3-205ENST00000559898 GTF2E1P29083 439 aaPredicted RBP23.2■■□□□ 1.3
HDDC3-205ENST00000559898 MBIPQ9NS73 344 aa23.2■■□□□ 1.3
HDDC3-205ENST00000559898 LAMB2P55268 1798 aa23.19■■□□□ 1.3
HDDC3-205ENST00000559898 KDM2BQ8NHM5 1336 aa23.19■■□□□ 1.3
HDDC3-205ENST00000559898 GLTPD2A6NH11 291 aa23.19■■□□□ 1.3
HDDC3-205ENST00000559898 SYNE4Q8N205 404 aa23.19■■□□□ 1.3
HDDC3-205ENST00000559898 TAOK3Q9H2K8 898 aa23.19■■□□□ 1.3
HDDC3-205ENST00000559898 CHPF2Q9P2E5 772 aa23.19■■□□□ 1.3
HDDC3-205ENST00000559898 SNED1Q8TER0 1413 aa23.17■■□□□ 1.3
HDDC3-205ENST00000559898 LTBP3Q9NS15 1303 aa23.17■■□□□ 1.3
HDDC3-205ENST00000559898 ZNF853P0CG23 659 aa23.17■■□□□ 1.3
HDDC3-205ENST00000559898 CRY2Q49AN0 593 aa23.17■■□□□ 1.3
HDDC3-205ENST00000559898 NYXQ9GZU5 481 aa23.17■■□□□ 1.3
HDDC3-205ENST00000559898 HTRA3P83110 453 aa23.16■■□□□ 1.3
HDDC3-205ENST00000559898 CFAP44Q96MT7 982 aa23.16■■□□□ 1.3
HDDC3-205ENST00000559898 DDX21Q9NR30 783 aaKnown RBP eCLIP23.16■■□□□ 1.3
HDDC3-205ENST00000559898 WDR90Q96KV7 1748 aa23.16■■□□□ 1.3
HDDC3-205ENST00000559898 TAF1P21675 1872 aa23.15■■□□□ 1.3
HDDC3-205ENST00000559898 IBTKQ9P2D0 1353 aaPredicted RBP23.15■■□□□ 1.3
HDDC3-205ENST00000559898 ZC3H4Q9UPT8 1303 aaKnown RBP23.15■■□□□ 1.3
Retrieved 100 of 20,778 RNA–protein pairs in 36.6 ms