RNA–Protein interactions for RNA: ENST00000558338.1

VPS13C-206, Transcript of vacuolar protein sorting 13 homolog C, humanhuman

TSL 2

Gene VPS13C, Length 1,863 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13C-206ENST00000558338 AK9Q5TCS8 1911 aa8.88□□□□□ -0.99
VPS13C-206ENST00000558338 PXDNQ92626 1479 aa8.88□□□□□ -0.99
VPS13C-206ENST00000558338 PNMA6EA0A0J9YXQ4 647 aa8.87□□□□□ -0.99
VPS13C-206ENST00000558338 ALDH1L1O75891 902 aa8.87□□□□□ -0.99
VPS13C-206ENST00000558338 NKX1-1Q15270 411 aaPredicted RBP8.87□□□□□ -0.99
VPS13C-206ENST00000558338 KIF1BPQ96EK5 621 aa8.87□□□□□ -0.99
VPS13C-206ENST00000558338 ESYT1Q9BSJ8 1104 aa8.87□□□□□ -0.99
VPS13C-206ENST00000558338 SLC24A3Q9HC58 644 aa8.87□□□□□ -0.99
VPS13C-206ENST00000558338 CD2BP2O95400 341 aaKnown RBP8.87□□□□□ -0.99
VPS13C-206ENST00000558338 HMGB1P09429 215 aaKnown RBP8.87□□□□□ -0.99
VPS13C-206ENST00000558338 EIF2S2P20042 333 aaKnown RBP8.87□□□□□ -0.99
VPS13C-206ENST00000558338 KRT28Q7Z3Y7 464 aa8.87□□□□□ -0.99
VPS13C-206ENST00000558338 PROSER2Q86WR7 435 aaPredicted RBP8.87□□□□□ -0.99
VPS13C-206ENST00000558338 KCTD17Q8N5Z5 321 aa8.87□□□□□ -0.99
VPS13C-206ENST00000558338 C19orf44Q9H6X5 657 aa8.87□□□□□ -0.99
VPS13C-206ENST00000558338 CHPF2Q9P2E5 772 aa8.87□□□□□ -0.99
VPS13C-206ENST00000558338 HEG1Q9ULI3 1381 aa8.87□□□□□ -0.99
VPS13C-206ENST00000558338 CRYBG1Q9Y4K1 1723 aa8.86□□□□□ -0.99
VPS13C-206ENST00000558338 SCN11AQ9UI33 1791 aa8.86□□□□□ -0.99
VPS13C-206ENST00000558338 FSD2A1L4K1 749 aa8.86□□□□□ -0.99
VPS13C-206ENST00000558338 BEND3Q5T5X7 828 aa8.86□□□□□ -0.99
VPS13C-206ENST00000558338 LRRC59Q96AG4 307 aaKnown RBP8.86□□□□□ -0.99
VPS13C-206ENST00000558338 IL17RAQ96F46 866 aa8.86□□□□□ -0.99
VPS13C-206ENST00000558338 PHAXQ9H814 394 aaKnown RBP8.86□□□□□ -0.99
VPS13C-206ENST00000558338 LGR6Q9HBX8 967 aa8.86□□□□□ -0.99
VPS13C-206ENST00000558338 TRIM6-TRIM34B2RNG4 842 aa8.85□□□□□ -0.99
VPS13C-206ENST00000558338 DDX58O95786 925 aaKnown RBP8.85□□□□□ -0.99
VPS13C-206ENST00000558338 MTX1Q13505 466 aa8.85□□□□□ -0.99
VPS13C-206ENST00000558338 ERC1Q8IUD2 1116 aa8.85□□□□□ -0.99
VPS13C-206ENST00000558338 ORAI2Q96SN7 254 aa8.85□□□□□ -0.99
VPS13C-206ENST00000558338 HYPKQ9NX55 129 aa8.85□□□□□ -0.99
VPS13C-206ENST00000558338 BRPF3Q9ULD4 1205 aa8.85□□□□□ -0.99
VPS13C-206ENST00000558338 PI4KAP2A4QPH2 592 aa8.85□□□□□ -0.99
VPS13C-206ENST00000558338 SURF6O75683 361 aaKnown RBP8.85□□□□□ -0.99
VPS13C-206ENST00000558338 CHMLP26374 656 aa8.85□□□□□ -0.99
VPS13C-206ENST00000558338 MRE11P49959 708 aa8.85□□□□□ -0.99
VPS13C-206ENST00000558338 MPRIPQ6WCQ1 1025 aa8.85□□□□□ -0.99
VPS13C-206ENST00000558338 PPP1R42Q7Z4L9 355 aa8.85□□□□□ -0.99
VPS13C-206ENST00000558338 PI4KAP1Q8N8J0 262 aa8.85□□□□□ -0.99
VPS13C-206ENST00000558338 ZC3H15Q8WU90 426 aaKnown RBP8.85□□□□□ -0.99
VPS13C-206ENST00000558338 GPATCH3Q96I76 525 aa8.85□□□□□ -0.99
VPS13C-206ENST00000558338 ERBB3P21860 1342 aa8.85□□□□□ -0.99
VPS13C-206ENST00000558338 TTC41PQ6P2S7 1318 aa8.85□□□□□ -0.99
VPS13C-206ENST00000558338 USP42Q9H9J4 1324 aaKnown RBP8.85□□□□□ -0.99
VPS13C-206ENST00000558338 ADCY9O60503 1353 aa8.85□□□□□ -0.99
VPS13C-206ENST00000558338 RGPD5Q99666 1765 aa8.85□□□□□ -0.99
VPS13C-206ENST00000558338 MRC1P22897 1456 aa8.84□□□□□ -0.99
VPS13C-206ENST00000558338 SRGAP3O43295 1099 aa8.84□□□□□ -0.99
VPS13C-206ENST00000558338 ATF3P18847 181 aa8.84□□□□□ -0.99
VPS13C-206ENST00000558338 CNTROBQ8N137 903 aa8.84□□□□□ -0.99
VPS13C-206ENST00000558338 RHPN1Q8TCX5 695 aa8.84□□□□□ -0.99
VPS13C-206ENST00000558338 RAPGEF4Q8WZA2 1011 aa8.84□□□□□ -0.99
VPS13C-206ENST00000558338 RILPL2Q969X0 211 aa8.84□□□□□ -0.99
VPS13C-206ENST00000558338 RBM33Q96EV2 1170 aaKnown RBP8.84□□□□□ -0.99
VPS13C-206ENST00000558338 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP8.84□□□□□ -0.999e-8■■■□□ 15.6
VPS13C-206ENST00000558338 PKD1L3Q7Z443 1732 aa8.84□□□□□ -0.99
VPS13C-206ENST00000558338 PARP4Q9UKK3 1724 aaKnown RBP8.84□□□□□ -0.99
VPS13C-206ENST00000558338 GTPBP6O43824 516 aaPredicted RBP8.83□□□□□ -1
VPS13C-206ENST00000558338 GIGYF1O75420 1035 aaPredicted RBP8.83□□□□□ -1
VPS13C-206ENST00000558338 KSR2Q6VAB6 950 aa8.83□□□□□ -1
VPS13C-206ENST00000558338 SPG7Q9UQ90 795 aa8.83□□□□□ -1
VPS13C-206ENST00000558338 TNS3Q68CZ2 1445 aa8.83□□□□□ -1
VPS13C-206ENST00000558338 CYP2E1P05181 493 aaPredicted RBP8.83□□□□□ -1
VPS13C-206ENST00000558338 TATP17735 454 aaPredicted RBP8.83□□□□□ -1
VPS13C-206ENST00000558338 SSFA2P28290 1259 aa8.83□□□□□ -1
VPS13C-206ENST00000558338 FAM43AQ8N2R8 423 aa8.83□□□□□ -1
VPS13C-206ENST00000558338 RGS22Q8NE09 1264 aa8.83□□□□□ -1
VPS13C-206ENST00000558338 ANO2Q9NQ90 1003 aa8.83□□□□□ -1
VPS13C-206ENST00000558338 DDX21Q9NR30 783 aaKnown RBP eCLIP8.83□□□□□ -1
VPS13C-206ENST00000558338 BMP2KQ9NSY1 1161 aaPredicted RBP8.83□□□□□ -1
VPS13C-206ENST00000558338 C9orf78Q9NZ63 289 aaPredicted RBP8.83□□□□□ -1
VPS13C-206ENST00000558338 COL18A1P39060 1754 aa8.83□□□□□ -1
VPS13C-206ENST00000558338 NPHP3Q7Z494 1330 aa8.82□□□□□ -1
VPS13C-206ENST00000558338 KCNQ3O43525 872 aa8.82□□□□□ -1
VPS13C-206ENST00000558338 RAD21O60216 631 aa8.82□□□□□ -1
VPS13C-206ENST00000558338 GLRX3O76003 335 aaKnown RBP8.82□□□□□ -1
VPS13C-206ENST00000558338 BAG4O95429 457 aaKnown RBP8.82□□□□□ -1
VPS13C-206ENST00000558338 XPCQ01831 940 aaPredicted RBP8.82□□□□□ -1
VPS13C-206ENST00000558338 OS9Q13438 667 aaPredicted RBP8.82□□□□□ -1
VPS13C-206ENST00000558338 KLHL40Q2TBA0 621 aa8.82□□□□□ -1
VPS13C-206ENST00000558338 RUFY2Q8WXA3 655 aa8.82□□□□□ -1
VPS13C-206ENST00000558338 GZF1Q9H116 711 aaPredicted RBP8.82□□□□□ -1
VPS13C-206ENST00000558338 MAP3K2Q9Y2U5 619 aa8.82□□□□□ -1
VPS13C-206ENST00000558338 LAMB4A4D0S4 1761 aa8.82□□□□□ -1
VPS13C-206ENST00000558338 C5P01031 1676 aa8.81□□□□□ -1
VPS13C-206ENST00000558338 UTYO14607 1347 aa8.81□□□□□ -1
VPS13C-206ENST00000558338 NBPF7P0C2Y1 421 aaPredicted RBP8.81□□□□□ -1
VPS13C-206ENST00000558338 CLASRPQ8N2M8 674 aaKnown RBP8.81□□□□□ -1
VPS13C-206ENST00000558338 LINS1Q8NG48 757 aa8.81□□□□□ -1
VPS13C-206ENST00000558338 PI4K2BQ8TCG2 481 aa8.81□□□□□ -1
VPS13C-206ENST00000558338 INTS4Q96HW7 963 aaKnown RBP8.81□□□□□ -1
VPS13C-206ENST00000558338 TSPYL2Q9H2G4 693 aaPredicted RBP8.81□□□□□ -1
VPS13C-206ENST00000558338 IL1RAPL2Q9NP60 686 aa8.81□□□□□ -1
VPS13C-206ENST00000558338 NEK4P51957 841 aa8.81□□□□□ -1
VPS13C-206ENST00000558338 CUL4AQ13619 759 aa8.81□□□□□ -1
VPS13C-206ENST00000558338 TSHZ3Q63HK5 1081 aa8.81□□□□□ -1
VPS13C-206ENST00000558338 CADPS2Q86UW7 1296 aa8.81□□□□□ -1
VPS13C-206ENST00000558338 SLC52A2Q9HAB3 445 aa8.81□□□□□ -1
VPS13C-206ENST00000558338 GRPEL1Q9HAV7 217 aa8.81□□□□□ -1
VPS13C-206ENST00000558338 KDM6AO15550 1401 aaPredicted RBP8.8□□□□□ -1
Retrieved 100 of 20,778 RNA–protein pairs in 12.1 ms