RNA–Protein interactions for RNA: ENST00000558298.5

RTF1-205, Transcript of RTF1 homolog, Paf1/RNA polymerase II complex component, humanhuman

TSL 5

Gene RTF1, Length 327 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RTF1-205ENST00000558298 A0A087WZG4 1122 aa10.15□□□□□ -0.78
RTF1-205ENST00000558298 MMP10P09238 476 aa10.15□□□□□ -0.78
RTF1-205ENST00000558298 PDE4AP27815 886 aa10.15□□□□□ -0.78
RTF1-205ENST00000558298 DDR1Q08345 913 aa10.15□□□□□ -0.78
RTF1-205ENST00000558298 NLGN1Q8N2Q7 840 aa10.15□□□□□ -0.78
RTF1-205ENST00000558298 CHMP4AQ9BY43 222 aa10.15□□□□□ -0.78
RTF1-205ENST00000558298 SRP68Q9UHB9 627 aaKnown RBP10.15□□□□□ -0.78
RTF1-205ENST00000558298 RRP7AQ9Y3A4 280 aaKnown RBP10.15□□□□□ -0.78
RTF1-205ENST00000558298 ANKRD31Q8N7Z5 1873 aa10.15□□□□□ -0.79
RTF1-205ENST00000558298 NUP98P52948 1817 aa10.14□□□□□ -0.79
RTF1-205ENST00000558298 ARFGEF1Q9Y6D6 1849 aa10.14□□□□□ -0.79
RTF1-205ENST00000558298 TM4SF1P30408 202 aa10.14□□□□□ -0.79
RTF1-205ENST00000558298 NARFQ9UHQ1 456 aa10.14□□□□□ -0.79
RTF1-205ENST00000558298 PRAMEF22A3QJZ6 481 aa10.13□□□□□ -0.79
RTF1-205ENST00000558298 POLRMTO00411 1230 aaKnown RBP10.13□□□□□ -0.79
RTF1-205ENST00000558298 YBX3P16989 372 aaKnown RBP eCLIP10.13□□□□□ -0.79
RTF1-205ENST00000558298 RFC4P35249 363 aa10.13□□□□□ -0.79
RTF1-205ENST00000558298 LRP10Q7Z4F1 713 aa10.13□□□□□ -0.79
RTF1-205ENST00000558298 MBIPQ9NS73 344 aa10.13□□□□□ -0.79
RTF1-205ENST00000558298 ISY1Q9ULR0 285 aaKnown RBP10.13□□□□□ -0.79
RTF1-205ENST00000558298 USP16Q9Y5T5 823 aa10.13□□□□□ -0.79
RTF1-205ENST00000558298 ATP10DQ9P241 1426 aa10.13□□□□□ -0.79
RTF1-205ENST00000558298 COL11A2P13942 1736 aaPredicted RBP10.13□□□□□ -0.79
RTF1-205ENST00000558298 IBTKQ9P2D0 1353 aaPredicted RBP10.13□□□□□ -0.79
RTF1-205ENST00000558298 NEUROD2Q15784 382 aa10.12□□□□□ -0.79
RTF1-205ENST00000558298 USPL1Q5W0Q7 1092 aa10.12□□□□□ -0.79
RTF1-205ENST00000558298 CLEC4GQ6UXB4 293 aa10.12□□□□□ -0.79
RTF1-205ENST00000558298 FAM9BQ8IZU0 186 aa10.12□□□□□ -0.79
RTF1-205ENST00000558298 RIC1Q4ADV7 1423 aa10.11□□□□□ -0.79
RTF1-205ENST00000558298 NBPF26B4DH59 902 aa10.11□□□□□ -0.79
RTF1-205ENST00000558298 NBPF10Q6P3W6 841 aaKnown RBP10.11□□□□□ -0.79
RTF1-205ENST00000558298 NBPF15Q8N660 670 aa10.11□□□□□ -0.79
RTF1-205ENST00000558298 MIS18AQ9NYP9 233 aa10.11□□□□□ -0.79
RTF1-205ENST00000558298 ADCY9O60503 1353 aa10.11□□□□□ -0.79
RTF1-205ENST00000558298 ARFGEF2Q9Y6D5 1785 aa10.11□□□□□ -0.79
RTF1-205ENST00000558298 ERVV-1B6SEH8 477 aa10.1□□□□□ -0.79
RTF1-205ENST00000558298 CAMTA2O94983 1202 aa10.1□□□□□ -0.79
RTF1-205ENST00000558298 A1BGP04217 495 aa10.1□□□□□ -0.79
RTF1-205ENST00000558298 KCNA3P22001 575 aa10.1□□□□□ -0.79
RTF1-205ENST00000558298 RRP1P56182 461 aaKnown RBP10.1□□□□□ -0.79
RTF1-205ENST00000558298 NFIXQ14938 502 aa10.1□□□□□ -0.79
RTF1-205ENST00000558298 PDIA6Q15084 440 aa10.1□□□□□ -0.79
RTF1-205ENST00000558298 CARMIL3Q8ND23 1372 aa10.1□□□□□ -0.79
RTF1-205ENST00000558298 CANXP27824 592 aaKnown RBP10.09□□□□□ -0.79
RTF1-205ENST00000558298 TGFB2P61812 414 aa10.09□□□□□ -0.79
RTF1-205ENST00000558298 NFKBIBQ15653 356 aa10.09□□□□□ -0.79
RTF1-205ENST00000558298 KLHL34Q8N239 644 aa10.09□□□□□ -0.79
RTF1-205ENST00000558298 DDX21Q9NR30 783 aaKnown RBP eCLIP10.09□□□□□ -0.79
RTF1-205ENST00000558298 LAMB2P55268 1798 aa10.09□□□□□ -0.79
RTF1-205ENST00000558298 ZPR1O75312 459 aa10.08□□□□□ -0.8
RTF1-205ENST00000558298 DUSP27Q5VZP5 1158 aa10.08□□□□□ -0.8
RTF1-205ENST00000558298 ZNF428Q96B54 188 aa10.08□□□□□ -0.8
RTF1-205ENST00000558298 MYH16Q9H6N6 1097 aa10.08□□□□□ -0.8
RTF1-205ENST00000558298 DBF4Q9UBU7 674 aaPredicted RBP10.08□□□□□ -0.8
RTF1-205ENST00000558298 ZNF652Q9Y2D9 606 aa10.08□□□□□ -0.8
RTF1-205ENST00000558298 MAP3K15Q6ZN16 1313 aa10.07□□□□□ -0.8
RTF1-205ENST00000558298 DCAF8L1A6NGE4 600 aa10.07□□□□□ -0.8
RTF1-205ENST00000558298 E9PSI1 815 aa10.07□□□□□ -0.8
RTF1-205ENST00000558298 YY1P25490 414 aa10.07□□□□□ -0.8
RTF1-205ENST00000558298 BECN1Q14457 450 aa10.07□□□□□ -0.8
RTF1-205ENST00000558298 GPR162Q16538 588 aa10.07□□□□□ -0.8
RTF1-205ENST00000558298 HDGFL1Q5TGJ6 251 aa10.07□□□□□ -0.8
RTF1-205ENST00000558298 DZIP3Q86Y13 1208 aaKnown RBP10.07□□□□□ -0.8
RTF1-205ENST00000558298 TRMT2AQ8IZ69 625 aaKnown RBP10.07□□□□□ -0.8
RTF1-205ENST00000558298 RTN4Q9NQC3 1192 aaKnown RBP10.07□□□□□ -0.8
RTF1-205ENST00000558298 ZBTB4Q9P1Z0 1013 aaPredicted RBP10.07□□□□□ -0.8
RTF1-205ENST00000558298 PARP3Q9Y6F1 533 aa10.07□□□□□ -0.8
RTF1-205ENST00000558298 TNRC6CQ9HCJ0 1690 aaKnown RBP10.06□□□□□ -0.8
RTF1-205ENST00000558298 GRIN3BO60391 1043 aa10.06□□□□□ -0.8
RTF1-205ENST00000558298 HSP90AA1P07900 732 aaKnown RBP10.06□□□□□ -0.8
RTF1-205ENST00000558298 CT47B1P0C2W7 299 aaPredicted RBP10.06□□□□□ -0.8
RTF1-205ENST00000558298 DPEP1P16444 411 aa10.06□□□□□ -0.8
RTF1-205ENST00000558298 PIP4K2AP48426 406 aaPredicted RBP10.06□□□□□ -0.8
RTF1-205ENST00000558298 GOLGA2Q08379 1002 aa10.06□□□□□ -0.8
RTF1-205ENST00000558298 TBC1D9BQ66K14 1250 aa10.06□□□□□ -0.8
RTF1-205ENST00000558298 NPM2Q86SE8 214 aaKnown RBP10.06□□□□□ -0.8
RTF1-205ENST00000558298 HYPKQ9NX55 129 aa10.06□□□□□ -0.8
RTF1-205ENST00000558298 PDZRN3Q9UPQ7 1066 aa10.06□□□□□ -0.8
RTF1-205ENST00000558298 TBC1D2BQ9UPU7 963 aa10.06□□□□□ -0.8
RTF1-205ENST00000558298 SBF1O95248 1867 aa10.05□□□□□ -0.8
RTF1-205ENST00000558298 SERPINB2P05120 415 aa10.05□□□□□ -0.8
RTF1-205ENST00000558298 HSP90AA2PQ14568 343 aaPredicted RBP10.05□□□□□ -0.8
RTF1-205ENST00000558298 KRT24Q2M2I5 525 aa10.05□□□□□ -0.8
RTF1-205ENST00000558298 CCDC30Q5VVM6 783 aa10.05□□□□□ -0.8
RTF1-205ENST00000558298 GIGYF2Q6Y7W6 1299 aaKnown RBP10.05□□□□□ -0.8
RTF1-205ENST00000558298 CENPQQ7L2Z9 268 aaPredicted RBP10.05□□□□□ -0.8
RTF1-205ENST00000558298 C8orf58Q8NAV2 365 aa10.05□□□□□ -0.8
RTF1-205ENST00000558298 A0A0G2JLW4 131 aa10.04□□□□□ -0.8
RTF1-205ENST00000558298 SLFN5Q08AF3 891 aa10.04□□□□□ -0.8
RTF1-205ENST00000558298 TWISTNBQ3B726 338 aaPredicted RBP10.04□□□□□ -0.8
RTF1-205ENST00000558298 HSP90AB3PQ58FF7 597 aa10.04□□□□□ -0.8
RTF1-205ENST00000558298 PRR5LQ6MZQ0 368 aa10.04□□□□□ -0.8
RTF1-205ENST00000558298 KIF6Q6ZMV9 814 aa10.04□□□□□ -0.8
RTF1-205ENST00000558298 GOLGA6L2Q8N9W4 650 aaPredicted RBP10.04□□□□□ -0.8
RTF1-205ENST00000558298 ZNF784Q8NCA9 323 aaPredicted RBP10.04□□□□□ -0.8
RTF1-205ENST00000558298 TSR2Q969E8 191 aaKnown RBP10.04□□□□□ -0.8
RTF1-205ENST00000558298 SPINK5Q9NQ38 1064 aaPredicted RBP10.04□□□□□ -0.8
RTF1-205ENST00000558298 CHPF2Q9P2E5 772 aa10.04□□□□□ -0.8
RTF1-205ENST00000558298 RCAN3Q9UKA8 241 aa10.04□□□□□ -0.8
RTF1-205ENST00000558298 LAS1LQ9Y4W2 734 aaKnown RBP10.04□□□□□ -0.8
Retrieved 100 of 20,778 RNA–protein pairs in 52.2 ms