RNA–Protein interactions for RNA: ENST00000558013.5

LDLR-207, Transcript of low density lipoprotein receptor, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LDLR, Length 3,144 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-207ENST00000558013 SUCLG2Q96I99 432 aa15.56■□□□□ 0.08
LDLR-207ENST00000558013 DIAPH3Q9NSV4 1193 aa15.56■□□□□ 0.08
LDLR-207ENST00000558013 AACSQ86V21 672 aa15.55■□□□□ 0.08
LDLR-207ENST00000558013 PDLIM2Q96JY6 352 aa15.55■□□□□ 0.08
LDLR-207ENST00000558013 FAM227BQ96M60 508 aa15.55■□□□□ 0.08
LDLR-207ENST00000558013 ZC3H6P61129 1189 aaKnown RBP15.55■□□□□ 0.08
LDLR-207ENST00000558013 ARHGEF25Q86VW2 580 aa15.55■□□□□ 0.08
LDLR-207ENST00000558013 IL17RAQ96F46 866 aa15.55■□□□□ 0.08
LDLR-207ENST00000558013 CACNA1FO60840 1977 aa15.55■□□□□ 0.08
LDLR-207ENST00000558013 MYL6BP14649 208 aa15.54■□□□□ 0.08
LDLR-207ENST00000558013 SYT1P21579 422 aa15.54■□□□□ 0.08
LDLR-207ENST00000558013 ANKLE2Q86XL3 938 aa15.54■□□□□ 0.08
LDLR-207ENST00000558013 TCEANC2Q96MN5 208 aa15.54■□□□□ 0.08
LDLR-207ENST00000558013 BICC1Q9H694 974 aaKnown RBP15.54■□□□□ 0.08
LDLR-207ENST00000558013 TCHHQ07283 1943 aa15.54■□□□□ 0.08
LDLR-207ENST00000558013 SASH1O94885 1247 aa15.54■□□□□ 0.08
LDLR-207ENST00000558013 KSR2Q6VAB6 950 aa15.54■□□□□ 0.08
LDLR-207ENST00000558013 CCDC83Q8IWF9 413 aa15.54■□□□□ 0.08
LDLR-207ENST00000558013 EAF2Q96CJ1 260 aaPredicted RBP15.54■□□□□ 0.08
LDLR-207ENST00000558013 JAKMIP1Q96N16 626 aaKnown RBP15.54■□□□□ 0.08
LDLR-207ENST00000558013 TAF6LQ9Y6J9 622 aa15.54■□□□□ 0.08
LDLR-207ENST00000558013 FER1L4A9Z1Z3 1794 aa15.54■□□□□ 0.08
LDLR-207ENST00000558013 GLRX3O76003 335 aaKnown RBP15.54■□□□□ 0.08
LDLR-207ENST00000558013 MBD3O95983 291 aa15.54■□□□□ 0.08
LDLR-207ENST00000558013 HOXB7P09629 217 aa15.54■□□□□ 0.08
LDLR-207ENST00000558013 IFIT2P09913 472 aaKnown RBP15.54■□□□□ 0.08
LDLR-207ENST00000558013 MSNP26038 577 aaKnown RBP15.54■□□□□ 0.08
LDLR-207ENST00000558013 NECAB1Q8N987 351 aa15.54■□□□□ 0.08
LDLR-207ENST00000558013 KCNH5Q8NCM2 988 aa15.54■□□□□ 0.08
LDLR-207ENST00000558013 ECHDC1Q9NTX5 307 aa15.54■□□□□ 0.08
LDLR-207ENST00000558013 WDR33Q9C0J8 1336 aaKnown RBP15.53■□□□□ 0.08
LDLR-207ENST00000558013 DDX17Q92841 729 aaKnown RBP15.53■□□□□ 0.08
LDLR-207ENST00000558013 EDC3Q96F86 508 aaKnown RBP15.53■□□□□ 0.08
LDLR-207ENST00000558013 HYPKQ9NX55 129 aa15.53■□□□□ 0.08
LDLR-207ENST00000558013 LIMCH1Q9UPQ0 1083 aa15.53■□□□□ 0.08
LDLR-207ENST00000558013 CHGBP05060 677 aa15.52■□□□□ 0.08
LDLR-207ENST00000558013 NDUFB9Q9Y6M9 179 aa15.52■□□□□ 0.08
LDLR-207ENST00000558013 FIBPO43427 364 aa15.52■□□□□ 0.08
LDLR-207ENST00000558013 MED1Q15648 1581 aaPredicted RBP15.52■□□□□ 0.08
LDLR-207ENST00000558013 TRHP20396 242 aaPredicted RBP15.52■□□□□ 0.07
LDLR-207ENST00000558013 ST3GAL1Q11201 340 aa15.52■□□□□ 0.07
LDLR-207ENST00000558013 MTX1Q13505 466 aa15.52■□□□□ 0.07
LDLR-207ENST00000558013 PDIA6Q15084 440 aa15.52■□□□□ 0.07
LDLR-207ENST00000558013 BOLA2Q9H3K6 86 aa15.52■□□□□ 0.07
LDLR-207ENST00000558013 STX6O43752 255 aa15.51■□□□□ 0.07
LDLR-207ENST00000558013 IGKV5-2P06315 115 aa15.51■□□□□ 0.07
LDLR-207ENST00000558013 HSP90AB4PQ58FF6 505 aa15.51■□□□□ 0.07
LDLR-207ENST00000558013 EPHA10Q5JZY3 1008 aa15.51■□□□□ 0.07
LDLR-207ENST00000558013 GRM8O00222 908 aa15.51■□□□□ 0.07
LDLR-207ENST00000558013 ZSCAN22P10073 491 aaPredicted RBP15.51■□□□□ 0.07
LDLR-207ENST00000558013 TSPY26PQ9H489 355 aa15.5■□□□□ 0.07
LDLR-207ENST00000558013 SMC3Q9UQE7 1217 aa15.5■□□□□ 0.07
LDLR-207ENST00000558013 TTC41PQ6P2S7 1318 aa15.5■□□□□ 0.07
LDLR-207ENST00000558013 GJB2P29033 226 aa15.5■□□□□ 0.07
LDLR-207ENST00000558013 AMOTQ4VCS5 1084 aa15.5■□□□□ 0.07
LDLR-207ENST00000558013 PDRG1Q9NUG6 133 aa15.5■□□□□ 0.07
LDLR-207ENST00000558013 NOL7Q9UMY1 257 aaKnown RBP15.5■□□□□ 0.07
LDLR-207ENST00000558013 USP42Q9H9J4 1324 aaKnown RBP15.5■□□□□ 0.07
LDLR-207ENST00000558013 NMIQ13287 307 aaPredicted RBP15.5■□□□□ 0.07
LDLR-207ENST00000558013 NFATC2IPQ8NCF5 419 aa15.5■□□□□ 0.07
LDLR-207ENST00000558013 A0A0D9SFI3 127 aa15.49■□□□□ 0.07
LDLR-207ENST00000558013 DNM1Q05193 864 aaKnown RBP15.49■□□□□ 0.07
LDLR-207ENST00000558013 ME3Q16798 604 aa15.49■□□□□ 0.07
LDLR-207ENST00000558013 FAM173BQ6P4H8 233 aa15.49■□□□□ 0.07
LDLR-207ENST00000558013 KDM3BQ7LBC6 1761 aa15.49■□□□□ 0.07
LDLR-207ENST00000558013 ALDH1L1O75891 902 aa15.49■□□□□ 0.07
LDLR-207ENST00000558013 RBM8AQ9Y5S9 174 aaKnown RBP15.49■□□□□ 0.07
LDLR-207ENST00000558013 N4BP2Q86UW6 1770 aaPredicted RBP15.49■□□□□ 0.07
LDLR-207ENST00000558013 NECTIN1Q15223 517 aa15.48■□□□□ 0.07
LDLR-207ENST00000558013 RIC3Q7Z5B4 369 aa15.48■□□□□ 0.07
LDLR-207ENST00000558013 LINS1Q8NG48 757 aa15.48■□□□□ 0.07
LDLR-207ENST00000558013 KCNJ4P48050 445 aa15.48■□□□□ 0.07
LDLR-207ENST00000558013 ZNF830Q96NB3 372 aaPredicted RBP15.48■□□□□ 0.07
LDLR-207ENST00000558013 TPCN1Q9ULQ1 816 aa15.48■□□□□ 0.07
LDLR-207ENST00000558013 CCDC9Q9Y3X0 531 aaKnown RBP15.48■□□□□ 0.07
LDLR-207ENST00000558013 HEG1Q9ULI3 1381 aa15.48■□□□□ 0.07
LDLR-207ENST00000558013 F13A1P00488 732 aa15.48■□□□□ 0.07
LDLR-207ENST00000558013 FERMT3Q86UX7 667 aa15.48■□□□□ 0.07
LDLR-207ENST00000558013 VPS37CA5D8V6 355 aaPredicted RBP15.47■□□□□ 0.07
LDLR-207ENST00000558013 OFD1O75665 1012 aa15.47■□□□□ 0.07
LDLR-207ENST00000558013 G3BP1Q13283 466 aaKnown RBP eCLIP15.47■□□□□ 0.07
LDLR-207ENST00000558013 COPS6Q7L5N1 327 aa15.47■□□□□ 0.07
LDLR-207ENST00000558013 NLRP2Q9NX02 1062 aa15.47■□□□□ 0.07
LDLR-207ENST00000558013 CHMP3Q9Y3E7 222 aa15.47■□□□□ 0.07
LDLR-207ENST00000558013 R3HCC1Q9Y3T6 440 aaKnown RBP15.47■□□□□ 0.07
LDLR-207ENST00000558013 CCDC171Q6TFL3 1326 aa15.47■□□□□ 0.07
LDLR-207ENST00000558013 HCLS1P14317 486 aaPredicted RBP15.47■□□□□ 0.07
LDLR-207ENST00000558013 CREB3L3Q68CJ9 461 aa15.47■□□□□ 0.07
LDLR-207ENST00000558013 KRT28Q7Z3Y7 464 aa15.47■□□□□ 0.07
LDLR-207ENST00000558013 ZNF589Q86UQ0 364 aaPredicted RBP15.47■□□□□ 0.07
LDLR-207ENST00000558013 CABLES1Q8TDN4 633 aa15.47■□□□□ 0.07
LDLR-207ENST00000558013 XAGE3Q8WTP9 111 aa15.47■□□□□ 0.07
LDLR-207ENST00000558013 DDX21Q9NR30 783 aaKnown RBP eCLIP15.47■□□□□ 0.07
LDLR-207ENST00000558013 ZNF790Q6PG37 636 aa15.46■□□□□ 0.07
LDLR-207ENST00000558013 EVI5LQ96CN4 794 aa15.46■□□□□ 0.07
LDLR-207ENST00000558013 MYD88Q99836 296 aa15.46■□□□□ 0.07
LDLR-207ENST00000558013 ZSWIM6Q9HCJ5 1215 aa15.46■□□□□ 0.07
LDLR-207ENST00000558013 USP25Q9UHP3 1055 aa15.46■□□□□ 0.07
LDLR-207ENST00000558013 USP16Q9Y5T5 823 aa15.46■□□□□ 0.07
LDLR-207ENST00000558013 CYP46A1Q9Y6A2 500 aa15.46■□□□□ 0.07
Retrieved 100 of 20,778 RNA–protein pairs in 42 ms