RNA–Protein interactions for RNA: ENST00000556079.1

TMEM260-209, Transcript of transmembrane protein 260, humanhuman

TSL 2

Gene TMEM260, Length 596 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TMEM260-209ENST00000556079 LAMB4A4D0S4 1761 aa8.48□□□□□ -1.05
TMEM260-209ENST00000556079 BCORQ6W2J9 1755 aa8.48□□□□□ -1.05
TMEM260-209ENST00000556079 C10orf71Q711Q0 1435 aa8.48□□□□□ -1.05
TMEM260-209ENST00000556079 A0A0G2JLW4 131 aa8.48□□□□□ -1.05
TMEM260-209ENST00000556079 RALBP1Q15311 655 aa8.48□□□□□ -1.05
TMEM260-209ENST00000556079 NFE2L2Q16236 605 aa8.48□□□□□ -1.05
TMEM260-209ENST00000556079 TTC5Q8N0Z6 440 aa8.48□□□□□ -1.05
TMEM260-209ENST00000556079 PRKRIP1Q9H875 184 aaPredicted RBP8.48□□□□□ -1.05
TMEM260-209ENST00000556079 USP16Q9Y5T5 823 aa8.48□□□□□ -1.05
TMEM260-209ENST00000556079 ANKRD31Q8N7Z5 1873 aa8.48□□□□□ -1.05
TMEM260-209ENST00000556079 COL11A2P13942 1736 aaPredicted RBP8.47□□□□□ -1.05
TMEM260-209ENST00000556079 NEUROD2Q15784 382 aa8.47□□□□□ -1.05
TMEM260-209ENST00000556079 BICDL1Q6ZP65 573 aa8.47□□□□□ -1.05
TMEM260-209ENST00000556079 FAM212AQ96EL1 285 aa8.47□□□□□ -1.05
TMEM260-209ENST00000556079 KIF12Q96FN5 646 aa8.47□□□□□ -1.05
TMEM260-209ENST00000556079 TBC1D2BQ9UPU7 963 aa8.47□□□□□ -1.05
TMEM260-209ENST00000556079 BCS1LQ9Y276 419 aa8.47□□□□□ -1.05
TMEM260-209ENST00000556079 NRXN2Q9P2S2 1712 aa8.46□□□□□ -1.05
TMEM260-209ENST00000556079 NBPF26B4DH59 902 aa8.46□□□□□ -1.06
TMEM260-209ENST00000556079 POLRMTO00411 1230 aaKnown RBP8.46□□□□□ -1.06
TMEM260-209ENST00000556079 MAP3K13O43283 966 aa8.46□□□□□ -1.06
TMEM260-209ENST00000556079 DPEP1P16444 411 aa8.46□□□□□ -1.06
TMEM260-209ENST00000556079 HMGB2P26583 209 aaKnown RBP8.46□□□□□ -1.06
TMEM260-209ENST00000556079 CHRNA5P30532 468 aa8.46□□□□□ -1.06
TMEM260-209ENST00000556079 NFIXQ14938 502 aa8.46□□□□□ -1.06
TMEM260-209ENST00000556079 KRT24Q2M2I5 525 aa8.46□□□□□ -1.06
TMEM260-209ENST00000556079 NBPF10Q6P3W6 841 aaKnown RBP8.46□□□□□ -1.06
TMEM260-209ENST00000556079 ARHGAP27Q6ZUM4 889 aa8.46□□□□□ -1.06
TMEM260-209ENST00000556079 NBPF15Q8N660 670 aa8.46□□□□□ -1.06
TMEM260-209ENST00000556079 RTF1Q92541 710 aaKnown RBP8.46□□□□□ -1.06
TMEM260-209ENST00000556079 FMNL2Q96PY5 1086 aa8.46□□□□□ -1.06
TMEM260-209ENST00000556079 NMRK2Q9NPI5 230 aa8.46□□□□□ -1.06
TMEM260-209ENST00000556079 ADAMTS8Q9UP79 889 aa8.46□□□□□ -1.06
TMEM260-209ENST00000556079 CACNA1SQ13698 1873 aa8.46□□□□□ -1.06
TMEM260-209ENST00000556079 EIF5P55010 431 aaKnown RBP8.45□□□□□ -1.06
TMEM260-209ENST00000556079 HTRA3P83110 453 aa8.45□□□□□ -1.06
TMEM260-209ENST00000556079 DCAF8Q5TAQ9 597 aa8.45□□□□□ -1.06
TMEM260-209ENST00000556079 TBC1D9BQ66K14 1250 aa8.45□□□□□ -1.06
TMEM260-209ENST00000556079 MAPK8IP3Q9UPT6 1336 aa8.45□□□□□ -1.06
TMEM260-209ENST00000556079 TOMM70O94826 608 aa8.44□□□□□ -1.06
TMEM260-209ENST00000556079 ANXA1P04083 346 aa8.44□□□□□ -1.06
TMEM260-209ENST00000556079 KCNA3P22001 575 aa8.44□□□□□ -1.06
TMEM260-209ENST00000556079 TM4SF1P30408 202 aa8.44□□□□□ -1.06
TMEM260-209ENST00000556079 TMPOP42166 694 aaKnown RBP8.44□□□□□ -1.06
TMEM260-209ENST00000556079 APLP1P51693 650 aa8.44□□□□□ -1.06
TMEM260-209ENST00000556079 RIPK4P57078 832 aa8.44□□□□□ -1.06
TMEM260-209ENST00000556079 TAF7Q15545 349 aaPredicted RBP8.44□□□□□ -1.06
TMEM260-209ENST00000556079 LHX8Q68G74 356 aa8.44□□□□□ -1.06
TMEM260-209ENST00000556079 VSIG10Q8N0Z9 540 aa8.44□□□□□ -1.06
TMEM260-209ENST00000556079 NLGN1Q8N2Q7 840 aa8.44□□□□□ -1.06
TMEM260-209ENST00000556079 NGEFQ8N5V2 710 aa8.44□□□□□ -1.06
TMEM260-209ENST00000556079 DNAJC5GQ8N7S2 189 aa8.44□□□□□ -1.06
TMEM260-209ENST00000556079 NECTIN2Q92692 538 aa8.44□□□□□ -1.06
TMEM260-209ENST00000556079 ZNF428Q96B54 188 aa8.44□□□□□ -1.06
TMEM260-209ENST00000556079 NARFQ9UHQ1 456 aa8.44□□□□□ -1.06
TMEM260-209ENST00000556079 PARP3Q9Y6F1 533 aa8.44□□□□□ -1.06
TMEM260-209ENST00000556079 DLEC1Q9Y238 1755 aa8.43□□□□□ -1.06
TMEM260-209ENST00000556079 ZNF316A6NFI3 1004 aaPredicted RBP8.43□□□□□ -1.06
TMEM260-209ENST00000556079 ZPR1O75312 459 aa8.43□□□□□ -1.06
TMEM260-209ENST00000556079 CAMTA2O94983 1202 aa8.43□□□□□ -1.06
TMEM260-209ENST00000556079 STARD3NLO95772 234 aa8.43□□□□□ -1.06
TMEM260-209ENST00000556079 EIF4A1P60842 406 aaKnown RBP8.43□□□□□ -1.06
TMEM260-209ENST00000556079 TGFB2P61812 414 aa8.43□□□□□ -1.06
TMEM260-209ENST00000556079 PROSER3Q2NL68 480 aa8.43□□□□□ -1.06
TMEM260-209ENST00000556079 SLC51AQ86UW1 340 aa8.43□□□□□ -1.06
TMEM260-209ENST00000556079 TRIM35Q9UPQ4 493 aa8.43□□□□□ -1.06
TMEM260-209ENST00000556079 TNRC6CQ9HCJ0 1690 aaKnown RBP8.43□□□□□ -1.06
TMEM260-209ENST00000556079 NUP98P52948 1817 aa8.43□□□□□ -1.06
TMEM260-209ENST00000556079 FAM177BA6PVY3 158 aa8.42□□□□□ -1.06
TMEM260-209ENST00000556079 HTATSF1O43719 755 aaKnown RBP8.42□□□□□ -1.06
TMEM260-209ENST00000556079 SNRPA1P09661 255 aaKnown RBP8.42□□□□□ -1.06
TMEM260-209ENST00000556079 WDR43Q15061 677 aaKnown RBP eCLIP8.42□□□□□ -1.06
TMEM260-209ENST00000556079 HLFQ16534 295 aa8.42□□□□□ -1.06
TMEM260-209ENST00000556079 C9orf131Q5VYM1 1079 aa8.42□□□□□ -1.06
TMEM260-209ENST00000556079 TTLL7Q6ZT98 887 aa8.42□□□□□ -1.06
TMEM260-209ENST00000556079 LAS1LQ9Y4W2 734 aaKnown RBP8.42□□□□□ -1.06
TMEM260-209ENST00000556079 ARFGEF1Q9Y6D6 1849 aa8.42□□□□□ -1.06
TMEM260-209ENST00000556079 SERPINB2P05120 415 aa8.41□□□□□ -1.06
TMEM260-209ENST00000556079 MYL6BP14649 208 aa8.41□□□□□ -1.06
TMEM260-209ENST00000556079 ZEB1P37275 1124 aaPredicted RBP8.41□□□□□ -1.06
TMEM260-209ENST00000556079 DZIP3Q86Y13 1208 aaKnown RBP8.41□□□□□ -1.06
TMEM260-209ENST00000556079 TSPYL4Q9UJ04 414 aa8.41□□□□□ -1.06
TMEM260-209ENST00000556079 APAF1O14727 1248 aa8.4□□□□□ -1.06
TMEM260-209ENST00000556079 IL6STP40189 918 aaPredicted RBP8.4□□□□□ -1.06
TMEM260-209ENST00000556079 PRELPP51888 382 aa8.4□□□□□ -1.06
TMEM260-209ENST00000556079 RASSF7Q02833 373 aa8.4□□□□□ -1.06
TMEM260-209ENST00000556079 PRR5LQ6MZQ0 368 aa8.4□□□□□ -1.06
TMEM260-209ENST00000556079 RUNDC1Q96C34 613 aa8.4□□□□□ -1.06
TMEM260-209ENST00000556079 TRPC6Q9Y210 931 aa8.4□□□□□ -1.06
TMEM260-209ENST00000556079 PCDHB13Q9Y5F0 798 aa8.4□□□□□ -1.06
TMEM260-209ENST00000556079 SBF1O95248 1867 aa8.4□□□□□ -1.07
TMEM260-209ENST00000556079 CCDC88AQ3V6T2 1871 aa8.4□□□□□ -1.07
TMEM260-209ENST00000556079 SLX4Q8IY92 1834 aa8.4□□□□□ -1.07
TMEM260-209ENST00000556079 NEFMP07197 916 aa8.39□□□□□ -1.07
TMEM260-209ENST00000556079 PYGBP11216 843 aa8.39□□□□□ -1.07
TMEM260-209ENST00000556079 EIF2S2P20042 333 aaKnown RBP8.39□□□□□ -1.07
TMEM260-209ENST00000556079 PDIA6Q15084 440 aa8.39□□□□□ -1.07
TMEM260-209ENST00000556079 DALRD3Q5D0E6 543 aaKnown RBP8.39□□□□□ -1.07
TMEM260-209ENST00000556079 COL13A1Q5TAT6 717 aaPredicted RBP8.39□□□□□ -1.07
TMEM260-209ENST00000556079 IFNLR1Q8IU57 520 aaPredicted RBP8.39□□□□□ -1.07
Retrieved 100 of 20,778 RNA–protein pairs in 35.7 ms