RNA–Protein interactions for RNA: ENST00000555773.5

SHMT2-221, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 2

Gene SHMT2, Length 600 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-221ENST00000555773 MAP3K15Q6ZN16 1313 aa15.86■□□□□ 0.13
SHMT2-221ENST00000555773 COL15A1P39059 1388 aa15.86■□□□□ 0.13
SHMT2-221ENST00000555773 PHF14O94880 888 aa15.85■□□□□ 0.13
SHMT2-221ENST00000555773 AMIGO3Q86WK7 504 aa15.85■□□□□ 0.13
SHMT2-221ENST00000555773 SUPT16HQ9Y5B9 1047 aaKnown RBP15.85■□□□□ 0.13
SHMT2-221ENST00000555773 RNF123Q5XPI4 1314 aa15.85■□□□□ 0.13
SHMT2-221ENST00000555773 CAMTA2O94983 1202 aa15.84■□□□□ 0.13
SHMT2-221ENST00000555773 HSP90AB3PQ58FF7 597 aa15.84■□□□□ 0.13
SHMT2-221ENST00000555773 GIGYF2Q6Y7W6 1299 aaKnown RBP15.84■□□□□ 0.13
SHMT2-221ENST00000555773 DNAAF4Q8WXU2 420 aa15.84■□□□□ 0.13
SHMT2-221ENST00000555773 ZNF652Q9Y2D9 606 aa15.84■□□□□ 0.13
SHMT2-221ENST00000555773 C4BP0C0L5 1744 aa15.84■□□□□ 0.13
SHMT2-221ENST00000555773 LAMB4A4D0S4 1761 aa15.84■□□□□ 0.13
SHMT2-221ENST00000555773 COL5A3P25940 1745 aaPredicted RBP15.83■□□□□ 0.13
SHMT2-221ENST00000555773 TRIM27P14373 513 aa15.83■□□□□ 0.12
SHMT2-221ENST00000555773 RRP1P56182 461 aaKnown RBP15.83■□□□□ 0.12
SHMT2-221ENST00000555773 PDE3AQ14432 1141 aa15.83■□□□□ 0.12
SHMT2-221ENST00000555773 SMIM5Q71RC9 77 aa15.83■□□□□ 0.12
SHMT2-221ENST00000555773 COL23A1Q86Y22 540 aaPredicted RBP15.83■□□□□ 0.12
SHMT2-221ENST00000555773 METTL22Q9BUU2 404 aaPredicted RBP15.83■□□□□ 0.12
SHMT2-221ENST00000555773 ZBTB3Q9H5J0 574 aa15.83■□□□□ 0.12
SHMT2-221ENST00000555773 MAP3K2Q9Y2U5 619 aa15.83■□□□□ 0.12
SHMT2-221ENST00000555773 PNPLA7Q6ZV29 1317 aa15.83■□□□□ 0.12
SHMT2-221ENST00000555773 MYH14Q7Z406 1995 aaKnown RBP15.82■□□□□ 0.12
SHMT2-221ENST00000555773 NEXNQ0ZGT2 675 aa15.82■□□□□ 0.12
SHMT2-221ENST00000555773 TCIRG1Q13488 830 aa15.82■□□□□ 0.12
SHMT2-221ENST00000555773 DZIP1LQ8IYY4 767 aaKnown RBP15.82■□□□□ 0.12
SHMT2-221ENST00000555773 USP42Q9H9J4 1324 aaKnown RBP15.82■□□□□ 0.12
SHMT2-221ENST00000555773 RREB1Q92766 1687 aa15.82■□□□□ 0.12
SHMT2-221ENST00000555773 MSH5O43196 834 aa15.81■□□□□ 0.12
SHMT2-221ENST00000555773 PLIN1O60240 522 aa15.81■□□□□ 0.12
SHMT2-221ENST00000555773 ADCY9O60503 1353 aa15.81■□□□□ 0.12
SHMT2-221ENST00000555773 TRIM28Q13263 835 aaKnown RBP15.81■□□□□ 0.12
SHMT2-221ENST00000555773 HLFQ16534 295 aa15.81■□□□□ 0.12
SHMT2-221ENST00000555773 USPL1Q5W0Q7 1092 aa15.81■□□□□ 0.12
SHMT2-221ENST00000555773 FTSJ3Q8IY81 847 aaKnown RBP15.81■□□□□ 0.12
SHMT2-221ENST00000555773 TAF1LQ8IZX4 1826 aa15.81■□□□□ 0.12
SHMT2-221ENST00000555773 SLC16A10Q8TF71 515 aa15.81■□□□□ 0.12
SHMT2-221ENST00000555773 F6X3S4 739 aa15.8■□□□□ 0.12
SHMT2-221ENST00000555773 CCT4P50991 539 aaKnown RBP15.8■□□□□ 0.12
SHMT2-221ENST00000555773 NLGN1Q8N2Q7 840 aa15.8■□□□□ 0.12
SHMT2-221ENST00000555773 LINS1Q8NG48 757 aa15.8■□□□□ 0.12
SHMT2-221ENST00000555773 SRP68Q9UHB9 627 aaKnown RBP15.8■□□□□ 0.12
SHMT2-221ENST00000555773 CACNA1FO60840 1977 aa15.8■□□□□ 0.12
SHMT2-221ENST00000555773 ABCC4O15439 1325 aa15.79■□□□□ 0.12
SHMT2-221ENST00000555773 ALDH1L1O75891 902 aa15.79■□□□□ 0.12
SHMT2-221ENST00000555773 GYS1P13807 737 aa15.79■□□□□ 0.12
SHMT2-221ENST00000555773 BEND3Q5T5X7 828 aa15.79■□□□□ 0.12
SHMT2-221ENST00000555773 INTS3Q68E01 1043 aaKnown RBP15.79■□□□□ 0.12
SHMT2-221ENST00000555773 SLC4A10Q6U841 1118 aa15.79■□□□□ 0.12
SHMT2-221ENST00000555773 CLUAP1Q96AJ1 413 aa15.79■□□□□ 0.12
SHMT2-221ENST00000555773 MYD88Q99836 296 aa15.79■□□□□ 0.12
SHMT2-221ENST00000555773 SRCIN1Q9C0H9 1055 aa15.79■□□□□ 0.12
SHMT2-221ENST00000555773 BCL2L12Q9HB09 334 aa15.79■□□□□ 0.12
SHMT2-221ENST00000555773 ZNF34Q8IZ26 560 aa15.78■□□□□ 0.12
SHMT2-221ENST00000555773 ISCA1Q9BUE6 129 aa15.78■□□□□ 0.12
SHMT2-221ENST00000555773 R3HDM1Q15032 1099 aaKnown RBP15.77■□□□□ 0.12
SHMT2-221ENST00000555773 PARP10Q53GL7 1025 aa15.77■□□□□ 0.12
SHMT2-221ENST00000555773 CCDC191Q8NCU4 936 aa15.77■□□□□ 0.12
SHMT2-221ENST00000555773 IBTKQ9P2D0 1353 aaPredicted RBP15.76■□□□□ 0.11
SHMT2-221ENST00000555773 IGKV5-2P06315 115 aa15.76■□□□□ 0.11
SHMT2-221ENST00000555773 TM4SF1P30408 202 aa15.76■□□□□ 0.11
SHMT2-221ENST00000555773 FKBP8Q14318 412 aa15.76■□□□□ 0.11
SHMT2-221ENST00000555773 SETDB2Q96T68 719 aa15.76■□□□□ 0.11
SHMT2-221ENST00000555773 TNNQ9UQP3 1299 aa15.76■□□□□ 0.11
SHMT2-221ENST00000555773 NIP7Q9Y221 180 aaKnown RBP eCLIP15.76■□□□□ 0.11
SHMT2-221ENST00000555773 ATP10DQ9P241 1426 aa15.76■□□□□ 0.11
SHMT2-221ENST00000555773 NUP188Q5SRE5 1749 aa15.75■□□□□ 0.11
SHMT2-221ENST00000555773 NEURL1BA8MQ27 555 aa15.75■□□□□ 0.11
SHMT2-221ENST00000555773 ATP5J2-PTCD1G3V325 749 aa15.75■□□□□ 0.11
SHMT2-221ENST00000555773 RLBP1P12271 317 aa15.75■□□□□ 0.11
SHMT2-221ENST00000555773 TBC1D9BQ66K14 1250 aa15.75■□□□□ 0.11
SHMT2-221ENST00000555773 TMEM57Q8N5G2 664 aa15.75■□□□□ 0.11
SHMT2-221ENST00000555773 PANK1Q8TE04 598 aa15.75■□□□□ 0.11
SHMT2-221ENST00000555773 CHMP4BQ9H444 224 aaKnown RBP15.75■□□□□ 0.11
SHMT2-221ENST00000555773 CWC25Q9NXE8 425 aaPredicted RBP15.75■□□□□ 0.11
SHMT2-221ENST00000555773 GCKRQ14397 625 aa15.74■□□□□ 0.11
SHMT2-221ENST00000555773 C20orf194Q5TEA3 1177 aa15.74■□□□□ 0.11
SHMT2-221ENST00000555773 PPP1R42Q7Z4L9 355 aa15.74■□□□□ 0.11
SHMT2-221ENST00000555773 NLRP10Q86W26 655 aa15.74■□□□□ 0.11
SHMT2-221ENST00000555773 UBR3Q6ZT12 1888 aa15.74■□□□□ 0.11
SHMT2-221ENST00000555773 PXDNLA1KZ92 1463 aa15.73■□□□□ 0.11
SHMT2-221ENST00000555773 GPTP24298 496 aa15.73■□□□□ 0.11
SHMT2-221ENST00000555773 MVPQ14764 893 aaKnown RBP15.73■□□□□ 0.11
SHMT2-221ENST00000555773 NFIXQ14938 502 aa15.73■□□□□ 0.11
SHMT2-221ENST00000555773 CWF19L2Q2TBE0 894 aaKnown RBP15.73■□□□□ 0.11
SHMT2-221ENST00000555773 ITPRIPQ8IWB1 547 aa15.73■□□□□ 0.11
SHMT2-221ENST00000555773 DDX19BQ9UMR2 479 aa15.73■□□□□ 0.11
SHMT2-221ENST00000555773 HDAC5Q9UQL6 1122 aa15.73■□□□□ 0.11
SHMT2-221ENST00000555773 TPTE2Q6XPS3 522 aa15.72■□□□□ 0.11
SHMT2-221ENST00000555773 BICDL1Q6ZP65 573 aa15.72■□□□□ 0.11
SHMT2-221ENST00000555773 UTP14AQ9BVJ6 771 aaKnown RBP15.72■□□□□ 0.11
SHMT2-221ENST00000555773 PDGFDQ9GZP0 370 aaPredicted RBP15.72■□□□□ 0.11
SHMT2-221ENST00000555773 NYXQ9GZU5 481 aa15.72■□□□□ 0.11
SHMT2-221ENST00000555773 MTFR1LQ9H019 292 aa15.72■□□□□ 0.11
SHMT2-221ENST00000555773 C9orf78Q9NZ63 289 aaPredicted RBP15.72■□□□□ 0.11
SHMT2-221ENST00000555773 COG6Q9Y2V7 657 aa15.72■□□□□ 0.11
SHMT2-221ENST00000555773 H7C1W4 665 aa15.71■□□□□ 0.11
SHMT2-221ENST00000555773 ZBTB7BO15156 539 aaPredicted RBP15.71■□□□□ 0.11
SHMT2-221ENST00000555773 PCCAP05165 728 aaPredicted RBP15.71■□□□□ 0.11
Retrieved 100 of 20,778 RNA–protein pairs in 134.7 ms