RNA–Protein interactions for RNA: ENST00000553619.1

VTI1B-202, Transcript of vesicle transport through interaction with t-SNAREs 1B, humanhuman

TSL 2

Gene VTI1B, Length 574 nt, Biotype retained intron, Subcellular localisation Cytosol .

RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VTI1B-202ENST00000553619 PTPRMP28827 1452 aa6.95□□□□□ -1.3
VTI1B-202ENST00000553619 IFT172Q9UG01 1749 aa6.95□□□□□ -1.3
VTI1B-202ENST00000553619 EIF3AQ14152 1382 aaKnown RBP6.95□□□□□ -1.3
VTI1B-202ENST00000553619 GPRASP1Q5JY77 1395 aa6.95□□□□□ -1.3
VTI1B-202ENST00000553619 TMEM2Q9UHN6 1383 aa6.95□□□□□ -1.3
VTI1B-202ENST00000553619 NRXN1Q9ULB1 1477 aa6.94□□□□□ -1.3
VTI1B-202ENST00000553619 AP1G2O75843 785 aa6.94□□□□□ -1.3
VTI1B-202ENST00000553619 CDCA8Q53HL2 280 aa6.94□□□□□ -1.3
VTI1B-202ENST00000553619 PPP2R2DQ66LE6 453 aa6.94□□□□□ -1.3
VTI1B-202ENST00000553619 KCTD15Q96SI1 283 aaPredicted RBP6.94□□□□□ -1.3
VTI1B-202ENST00000553619 NEXMIFQ5QGS0 1516 aa6.94□□□□□ -1.3
VTI1B-202ENST00000553619 TRPM1Q7Z4N2 1603 aa6.94□□□□□ -1.3
VTI1B-202ENST00000553619 UBR1Q8IWV7 1749 aa6.93□□□□□ -1.3
VTI1B-202ENST00000553619 TMF1P82094 1093 aa6.93□□□□□ -1.3
VTI1B-202ENST00000553619 Q6ZVU0 165 aa6.93□□□□□ -1.3
VTI1B-202ENST00000553619 ZBTB33Q86T24 672 aa6.93□□□□□ -1.3
VTI1B-202ENST00000553619 EPS8L1Q8TE68 723 aa6.93□□□□□ -1.3
VTI1B-202ENST00000553619 PCMTD1Q96MG8 357 aaPredicted RBP6.93□□□□□ -1.3
VTI1B-202ENST00000553619 HMX1Q9NP08 348 aaPredicted RBP6.93□□□□□ -1.3
VTI1B-202ENST00000553619 PGPEP1Q9NXJ5 209 aa6.93□□□□□ -1.3
VTI1B-202ENST00000553619 TBX22Q9Y458 520 aa6.93□□□□□ -1.3
VTI1B-202ENST00000553619 ZC3H4Q9UPT8 1303 aaKnown RBP6.93□□□□□ -1.3
VTI1B-202ENST00000553619 LAMC1P11047 1609 aa6.93□□□□□ -1.3
VTI1B-202ENST00000553619 USP47Q96K76 1375 aa6.93□□□□□ -1.3
VTI1B-202ENST00000553619 PIK3C2GO75747 1445 aa6.93□□□□□ -1.3
VTI1B-202ENST00000553619 ST20-MTHFSA0A0A6YYL1 179 aa6.92□□□□□ -1.3
VTI1B-202ENST00000553619 TTLL8A6PVC2 850 aa6.92□□□□□ -1.3
VTI1B-202ENST00000553619 INTS6LQ5JSJ4 861 aaKnown RBP6.92□□□□□ -1.3
VTI1B-202ENST00000553619 SIRT1Q96EB6 747 aa6.92□□□□□ -1.3
VTI1B-202ENST00000553619 PLEKHG1Q9ULL1 1385 aa6.92□□□□□ -1.3
VTI1B-202ENST00000553619 SCAF11Q99590 1463 aaKnown RBP6.92□□□□□ -1.3
VTI1B-202ENST00000553619 SETBP1Q9Y6X0 1596 aa6.91□□□□□ -1.3
VTI1B-202ENST00000553619 FIGNL2A6NMB9 653 aa6.91□□□□□ -1.3
VTI1B-202ENST00000553619 SPINT1O43278 529 aa6.91□□□□□ -1.3
VTI1B-202ENST00000553619 USP17L8P0C7I0 530 aa6.91□□□□□ -1.3
VTI1B-202ENST00000553619 LTKP29376 864 aa6.91□□□□□ -1.3
VTI1B-202ENST00000553619 ZNF800Q2TB10 664 aaPredicted RBP eCLIP6.91□□□□□ -1.34e-11■■■□□ 14.9
VTI1B-202ENST00000553619 DIEXFQ68CQ4 756 aaKnown RBP6.91□□□□□ -1.3
VTI1B-202ENST00000553619 TMEM132EQ6IEE7 984 aa6.91□□□□□ -1.3
VTI1B-202ENST00000553619 ADAM32Q8TC27 787 aa6.91□□□□□ -1.3
VTI1B-202ENST00000553619 AGBL1Q96MI9 1066 aa6.91□□□□□ -1.3
VTI1B-202ENST00000553619 HIRIP3Q9BW71 556 aaPredicted RBP6.91□□□□□ -1.3
VTI1B-202ENST00000553619 CDV3Q9UKY7 258 aaKnown RBP6.91□□□□□ -1.3
VTI1B-202ENST00000553619 TRAK1Q9UPV9 953 aa6.91□□□□□ -1.3
VTI1B-202ENST00000553619 ARHGAP23Q9P227 1491 aa6.91□□□□□ -1.3
VTI1B-202ENST00000553619 SLIT1O75093 1534 aa6.91□□□□□ -1.3
VTI1B-202ENST00000553619 CEP170BQ9Y4F5 1589 aaPredicted RBP6.91□□□□□ -1.3
VTI1B-202ENST00000553619 MYO3AQ8NEV4 1616 aa6.9□□□□□ -1.3
VTI1B-202ENST00000553619 PTSQ03393 145 aa6.9□□□□□ -1.3
VTI1B-202ENST00000553619 PTK2Q05397 1052 aa6.9□□□□□ -1.3
VTI1B-202ENST00000553619 PUS7Q96PZ0 661 aaKnown RBP6.9□□□□□ -1.3
VTI1B-202ENST00000553619 POGKQ9P215 609 aa6.9□□□□□ -1.3
VTI1B-202ENST00000553619 CENPJQ9HC77 1338 aaPredicted RBP6.9□□□□□ -1.3
VTI1B-202ENST00000553619 ZNF142P52746 1687 aaPredicted RBP6.9□□□□□ -1.31
VTI1B-202ENST00000553619 KRT76Q01546 638 aa6.89□□□□□ -1.31
VTI1B-202ENST00000553619 DHX9Q08211 1270 aaKnown RBP6.89□□□□□ -1.31
VTI1B-202ENST00000553619 GPR161Q8N6U8 529 aaKnown RBP6.89□□□□□ -1.31
VTI1B-202ENST00000553619 STK26Q9P289 416 aa6.89□□□□□ -1.31
VTI1B-202ENST00000553619 ALKQ9UM73 1620 aa6.89□□□□□ -1.31
VTI1B-202ENST00000553619 LRPPRCP42704 1394 aaKnown RBP6.88□□□□□ -1.31
VTI1B-202ENST00000553619 ABCC11Q96J66 1382 aa6.88□□□□□ -1.31
VTI1B-202ENST00000553619 PIK3R4Q99570 1358 aa6.88□□□□□ -1.31
VTI1B-202ENST00000553619 CTSOP43234 321 aaPredicted RBP6.88□□□□□ -1.31
VTI1B-202ENST00000553619 RAB15P59190 212 aa6.88□□□□□ -1.31
VTI1B-202ENST00000553619 RELBQ01201 579 aa6.88□□□□□ -1.31
VTI1B-202ENST00000553619 DDX10Q13206 875 aaKnown RBP6.88□□□□□ -1.31
VTI1B-202ENST00000553619 TMPRSS4Q9NRS4 437 aa6.88□□□□□ -1.31
VTI1B-202ENST00000553619 GPSM3Q9Y4H4 160 aa6.88□□□□□ -1.31
VTI1B-202ENST00000553619 YTHDC2Q9H6S0 1430 aaKnown RBP6.87□□□□□ -1.31
VTI1B-202ENST00000553619 EVC2Q86UK5 1308 aa6.87□□□□□ -1.31
VTI1B-202ENST00000553619 RFC5P40937 340 aa6.87□□□□□ -1.31
VTI1B-202ENST00000553619 SLC26A8Q96RN1 970 aa6.87□□□□□ -1.31
VTI1B-202ENST00000553619 INSM2Q96T92 566 aaPredicted RBP6.87□□□□□ -1.31
VTI1B-202ENST00000553619 POLR3GLQ9BT43 218 aa6.87□□□□□ -1.31
VTI1B-202ENST00000553619 AMOTL2Q9Y2J4 779 aa6.87□□□□□ -1.31
VTI1B-202ENST00000553619 DIP2AQ14689 1571 aa6.86□□□□□ -1.31
VTI1B-202ENST00000553619 CCDC7Q96M83 1385 aa6.86□□□□□ -1.31
VTI1B-202ENST00000553619 SBNO2Q9Y2G9 1366 aa6.86□□□□□ -1.31
VTI1B-202ENST00000553619 NBPF20Q3BBV1 942 aa6.86□□□□□ -1.31
VTI1B-202ENST00000553619 CCDC155Q8N6L0 562 aa6.86□□□□□ -1.31
VTI1B-202ENST00000553619 ZNF784Q8NCA9 323 aaPredicted RBP6.86□□□□□ -1.31
VTI1B-202ENST00000553619 TESK2Q96S53 571 aa6.86□□□□□ -1.31
VTI1B-202ENST00000553619 GOPCQ9HD26 462 aa6.86□□□□□ -1.31
VTI1B-202ENST00000553619 IQGAP1P46940 1657 aa6.86□□□□□ -1.31
VTI1B-202ENST00000553619 MED14O60244 1454 aa6.85□□□□□ -1.31
VTI1B-202ENST00000553619 NPHP4O75161 1426 aaPredicted RBP6.85□□□□□ -1.31
VTI1B-202ENST00000553619 POLR1AO95602 1720 aaPredicted RBP6.85□□□□□ -1.31
VTI1B-202ENST00000553619 KIF7Q2M1P5 1343 aa6.85□□□□□ -1.31
VTI1B-202ENST00000553619 WASHC2AQ641Q2 1341 aa6.85□□□□□ -1.31
VTI1B-202ENST00000553619 KCNA6P17658 529 aa6.85□□□□□ -1.31
VTI1B-202ENST00000553619 TPRNQ4KMQ1 711 aa6.85□□□□□ -1.31
VTI1B-202ENST00000553619 CNTNAP3BQ96NU0 1288 aa6.85□□□□□ -1.31
VTI1B-202ENST00000553619 PRAM1Q96QH2 718 aa6.85□□□□□ -1.31
VTI1B-202ENST00000553619 TRIM34Q9BYJ4 488 aa6.85□□□□□ -1.31
VTI1B-202ENST00000553619 CNTNAP3Q9BZ76 1288 aa6.85□□□□□ -1.31
VTI1B-202ENST00000553619 ZNF395Q9H8N7 513 aaPredicted RBP6.85□□□□□ -1.31
VTI1B-202ENST00000553619 ADGRB1O14514 1584 aa6.85□□□□□ -1.31
VTI1B-202ENST00000553619 DLC1Q96QB1 1528 aa6.85□□□□□ -1.31
VTI1B-202ENST00000553619 FAM135BQ49AJ0 1406 aa6.84□□□□□ -1.31
VTI1B-202ENST00000553619 ADAMTS13Q76LX8 1427 aa6.84□□□□□ -1.31
Retrieved 100 of 20,778 RNA–protein pairs in 14.4 ms