RNA–Protein interactions for RNA: ENST00000553426.1

LINC00643-202, long intergenic non-protein coding RNA 643, humanhuman

TSL 3 BASIC

Gene LINC00643, Length 526 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00643-202ENST00000553426 TPTE2Q6XPS3 522 aa16.8■□□□□ 0.28
LINC00643-202ENST00000553426 NBPF15Q8N660 670 aa16.8■□□□□ 0.28
LINC00643-202ENST00000553426 DLEC1Q9Y238 1755 aa16.79■□□□□ 0.28
LINC00643-202ENST00000553426 DDX10Q13206 875 aaKnown RBP16.79■□□□□ 0.28
LINC00643-202ENST00000553426 SOGA3Q5TF21 947 aa16.79■□□□□ 0.28
LINC00643-202ENST00000553426 MASTLQ96GX5 879 aa16.79■□□□□ 0.28
LINC00643-202ENST00000553426 NIP7Q9Y221 180 aaKnown RBP eCLIP16.79■□□□□ 0.28
LINC00643-202ENST00000553426 PCNTO95613 3336 aa16.78■□□□□ 0.28
LINC00643-202ENST00000553426 C21orf2O43822 256 aa16.78■□□□□ 0.28
LINC00643-202ENST00000553426 GTF2E1P29083 439 aaPredicted RBP16.78■□□□□ 0.28
LINC00643-202ENST00000553426 EIF4A1P60842 406 aaKnown RBP16.78■□□□□ 0.28
LINC00643-202ENST00000553426 LMOD3Q0VAK6 560 aa16.78■□□□□ 0.28
LINC00643-202ENST00000553426 COL13A1Q5TAT6 717 aaPredicted RBP16.78■□□□□ 0.28
LINC00643-202ENST00000553426 STYK1Q6J9G0 422 aa16.78■□□□□ 0.28
LINC00643-202ENST00000553426 RBM46Q8TBY0 533 aaKnown RBP16.78■□□□□ 0.28
LINC00643-202ENST00000553426 RRAGCQ9HB90 399 aa16.78■□□□□ 0.28
LINC00643-202ENST00000553426 ZNF219Q9P2Y4 722 aaPredicted RBP16.78■□□□□ 0.28
LINC00643-202ENST00000553426 BCORQ6W2J9 1755 aa16.77■□□□□ 0.28
LINC00643-202ENST00000553426 SRGNP10124 158 aa16.77■□□□□ 0.28
LINC00643-202ENST00000553426 RIPK4P57078 832 aa16.77■□□□□ 0.28
LINC00643-202ENST00000553426 KIF6Q6ZMV9 814 aa16.77■□□□□ 0.28
LINC00643-202ENST00000553426 NGEFQ8N5V2 710 aa16.77■□□□□ 0.28
LINC00643-202ENST00000553426 THUMPD2Q9BTF0 503 aaKnown RBP16.77■□□□□ 0.28
LINC00643-202ENST00000553426 MYBBP1AQ9BQG0 1328 aaKnown RBP16.76■□□□□ 0.27
LINC00643-202ENST00000553426 DPY19L2Q6NUT2 758 aa16.76■□□□□ 0.27
LINC00643-202ENST00000553426 TSPYL4Q9UJ04 414 aa16.76■□□□□ 0.27
LINC00643-202ENST00000553426 RRP7AQ9Y3A4 280 aaKnown RBP16.76■□□□□ 0.27
LINC00643-202ENST00000553426 DLG5Q8TDM6 1919 aa16.76■□□□□ 0.27
LINC00643-202ENST00000553426 SBF1O95248 1867 aa16.76■□□□□ 0.27
LINC00643-202ENST00000553426 GLTPD2A6NH11 291 aa16.75■□□□□ 0.27
LINC00643-202ENST00000553426 FAM177BA6PVY3 158 aa16.75■□□□□ 0.27
LINC00643-202ENST00000553426 ERVV-1B6SEH8 477 aa16.75■□□□□ 0.27
LINC00643-202ENST00000553426 NFKBIEO00221 500 aa16.75■□□□□ 0.27
LINC00643-202ENST00000553426 NPR1P16066 1061 aa16.75■□□□□ 0.27
LINC00643-202ENST00000553426 FSTL1Q12841 308 aa16.75■□□□□ 0.27
LINC00643-202ENST00000553426 PRPF40BQ6NWY9 871 aaKnown RBP16.75■□□□□ 0.27
LINC00643-202ENST00000553426 NYXQ9GZU5 481 aa16.75■□□□□ 0.27
LINC00643-202ENST00000553426 TAOK3Q9H2K8 898 aa16.75■□□□□ 0.27
LINC00643-202ENST00000553426 ANKRD31Q8N7Z5 1873 aa16.75■□□□□ 0.27
LINC00643-202ENST00000553426 WDR43Q15061 677 aaKnown RBP eCLIP16.74■□□□□ 0.27
LINC00643-202ENST00000553426 HLFQ16534 295 aa16.74■□□□□ 0.27
LINC00643-202ENST00000553426 ERFEQ4G0M1 354 aa16.74■□□□□ 0.27
LINC00643-202ENST00000553426 BABAM1Q9NWV8 329 aa16.74■□□□□ 0.27
LINC00643-202ENST00000553426 MYL6BP14649 208 aa16.73■□□□□ 0.27
LINC00643-202ENST00000553426 VEGFAP15692 232 aaPredicted RBP16.73■□□□□ 0.27
LINC00643-202ENST00000553426 LAMB4A4D0S4 1761 aa16.73■□□□□ 0.27
LINC00643-202ENST00000553426 ERBB4Q15303 1308 aa16.72■□□□□ 0.27
LINC00643-202ENST00000553426 MAP3K15Q6ZN16 1313 aa16.72■□□□□ 0.27
LINC00643-202ENST00000553426 LTBP3Q9NS15 1303 aa16.72■□□□□ 0.27
LINC00643-202ENST00000553426 TNRC6CQ9HCJ0 1690 aaKnown RBP16.72■□□□□ 0.27
LINC00643-202ENST00000553426 KDM3BQ7LBC6 1761 aa16.72■□□□□ 0.27
LINC00643-202ENST00000553426 ALDH1B1P30837 517 aa16.72■□□□□ 0.27
LINC00643-202ENST00000553426 TMPOP42166 694 aaKnown RBP16.72■□□□□ 0.27
LINC00643-202ENST00000553426 PRELPP51888 382 aa16.72■□□□□ 0.27
LINC00643-202ENST00000553426 JMYQ8N9B5 988 aa16.72■□□□□ 0.27
LINC00643-202ENST00000553426 KLRG1Q96E93 195 aa16.72■□□□□ 0.27
LINC00643-202ENST00000553426 COL11A2P13942 1736 aaPredicted RBP16.71■□□□□ 0.27
LINC00643-202ENST00000553426 KLRG2A4D1S0 409 aaPredicted RBP16.71■□□□□ 0.27
LINC00643-202ENST00000553426 CAPN15O75808 1086 aa16.71■□□□□ 0.27
LINC00643-202ENST00000553426 CCDC93Q567U6 631 aa16.71■□□□□ 0.27
LINC00643-202ENST00000553426 SMC1BQ8NDV3 1235 aa16.71■□□□□ 0.27
LINC00643-202ENST00000553426 EIF2S2P20042 333 aaKnown RBP16.7■□□□□ 0.26
LINC00643-202ENST00000553426 NEUROD2Q15784 382 aa16.7■□□□□ 0.26
LINC00643-202ENST00000553426 TTLL7Q6ZT98 887 aa16.7■□□□□ 0.26
LINC00643-202ENST00000553426 CCDC146Q8IYE0 955 aa16.69■□□□□ 0.26
LINC00643-202ENST00000553426 RUNDC1Q96C34 613 aa16.69■□□□□ 0.26
LINC00643-202ENST00000553426 ZBTB3Q9H5J0 574 aa16.69■□□□□ 0.26
LINC00643-202ENST00000553426 RTKN2Q8IZC4 609 aa16.68■□□□□ 0.26
LINC00643-202ENST00000553426 TIAM2Q8IVF5 1701 aa16.67■□□□□ 0.26
LINC00643-202ENST00000553426 FER1L6Q2WGJ9 1857 aa16.67■□□□□ 0.26
LINC00643-202ENST00000553426 CCDC88AQ3V6T2 1871 aa16.67■□□□□ 0.26
LINC00643-202ENST00000553426 GPTP24298 496 aa16.67■□□□□ 0.26
LINC00643-202ENST00000553426 PPP1R42Q7Z4L9 355 aa16.67■□□□□ 0.26
LINC00643-202ENST00000553426 NUTM1Q86Y26 1132 aa16.67■□□□□ 0.26
LINC00643-202ENST00000553426 RPGRQ92834 1020 aaKnown RBP16.67■□□□□ 0.26
LINC00643-202ENST00000553426 SLX4Q8IY92 1834 aa16.67■□□□□ 0.26
LINC00643-202ENST00000553426 IBTKQ9P2D0 1353 aaPredicted RBP16.66■□□□□ 0.26
LINC00643-202ENST00000553426 FKBP4Q02790 459 aaKnown RBP eCLIP16.66■□□□□ 0.26
LINC00643-202ENST00000553426 PARP10Q53GL7 1025 aa16.66■□□□□ 0.26
LINC00643-202ENST00000553426 GIGYF2Q6Y7W6 1299 aaKnown RBP16.66■□□□□ 0.26
LINC00643-202ENST00000553426 C7orf43Q8WVR3 580 aa16.66■□□□□ 0.26
LINC00643-202ENST00000553426 ZNF34Q8IZ26 560 aa16.65■□□□□ 0.26
LINC00643-202ENST00000553426 LAS1LQ9Y4W2 734 aaKnown RBP16.65■□□□□ 0.26
LINC00643-202ENST00000553426 CACNA1SQ13698 1873 aa16.65■□□□□ 0.26
LINC00643-202ENST00000553426 ARFGEF2Q9Y6D5 1785 aa16.64■□□□□ 0.25
LINC00643-202ENST00000553426 CRY2Q49AN0 593 aa16.64■□□□□ 0.25
LINC00643-202ENST00000553426 HSP90AB3PQ58FF7 597 aa16.64■□□□□ 0.25
LINC00643-202ENST00000553426 CC2D2BQ6DHV5 1058 aa16.64■□□□□ 0.25
LINC00643-202ENST00000553426 TMX4Q9H1E5 349 aaPredicted RBP16.64■□□□□ 0.25
LINC00643-202ENST00000553426 PRKRIP1Q9H875 184 aaPredicted RBP16.64■□□□□ 0.25
LINC00643-202ENST00000553426 ADAMTS8Q9UP79 889 aa16.64■□□□□ 0.25
LINC00643-202ENST00000553426 NUP98P52948 1817 aa16.63■□□□□ 0.25
LINC00643-202ENST00000553426 DICER1Q9UPY3 1922 aaKnown RBP16.63■□□□□ 0.25
LINC00643-202ENST00000553426 IQCA1LA6NCM1 817 aa16.63■□□□□ 0.25
LINC00643-202ENST00000553426 CHL1O00533 1208 aa16.63■□□□□ 0.25
LINC00643-202ENST00000553426 GRIPAP1Q4V328 841 aa16.63■□□□□ 0.25
LINC00643-202ENST00000553426 SUSD4Q5VX71 490 aa16.63■□□□□ 0.25
LINC00643-202ENST00000553426 TNS4Q8IZW8 715 aa16.63■□□□□ 0.25
LINC00643-202ENST00000553426 NECTIN2Q92692 538 aa16.63■□□□□ 0.25
LINC00643-202ENST00000553426 RBM17Q96I25 401 aaKnown RBP16.63■□□□□ 0.25
Retrieved 100 of 20,778 RNA–protein pairs in 18.4 ms