RNA–Protein interactions for RNA: ENST00000552909.5

LIMA1-216, Transcript of LIM domain and actin binding 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIMA1, Length 2,162 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-216ENST00000552909 ADRA2BP18089 450 aa9.6□□□□□ -0.87
LIMA1-216ENST00000552909 GOLGA2Q08379 1002 aa9.6□□□□□ -0.87
LIMA1-216ENST00000552909 NGEFQ8N5V2 710 aa9.6□□□□□ -0.87
LIMA1-216ENST00000552909 TEX13AQ9BXU3 409 aaPredicted RBP9.6□□□□□ -0.87
LIMA1-216ENST00000552909 ZNF330Q9Y3S2 320 aaPredicted RBP9.6□□□□□ -0.87
LIMA1-216ENST00000552909 POLD1P28340 1107 aa9.59□□□□□ -0.87
LIMA1-216ENST00000552909 EIF5P55010 431 aaKnown RBP9.59□□□□□ -0.87
LIMA1-216ENST00000552909 KRT24Q2M2I5 525 aa9.59□□□□□ -0.87
LIMA1-216ENST00000552909 WWC1Q8IX03 1113 aa9.59□□□□□ -0.87
LIMA1-216ENST00000552909 KLHL34Q8N239 644 aa9.59□□□□□ -0.87
LIMA1-216ENST00000552909 SYT17Q9BSW7 474 aa9.59□□□□□ -0.87
LIMA1-216ENST00000552909 NBPF26B4DH59 902 aa9.58□□□□□ -0.88
LIMA1-216ENST00000552909 CHL1O00533 1208 aa9.58□□□□□ -0.88
LIMA1-216ENST00000552909 USPL1Q5W0Q7 1092 aa9.58□□□□□ -0.88
LIMA1-216ENST00000552909 NBPF10Q6P3W6 841 aaKnown RBP9.58□□□□□ -0.88
LIMA1-216ENST00000552909 NBPF15Q8N660 670 aa9.58□□□□□ -0.88
LIMA1-216ENST00000552909 ZNF521Q96K83 1311 aa9.58□□□□□ -0.88
LIMA1-216ENST00000552909 USP42Q9H9J4 1324 aaKnown RBP9.58□□□□□ -0.88
LIMA1-216ENST00000552909 COL15A1P39059 1388 aa9.58□□□□□ -0.88
LIMA1-216ENST00000552909 FSD2A1L4K1 749 aa9.58□□□□□ -0.88
LIMA1-216ENST00000552909 MMP10P09238 476 aa9.58□□□□□ -0.88
LIMA1-216ENST00000552909 RGS3P49796 1198 aa9.58□□□□□ -0.88
LIMA1-216ENST00000552909 TBC1D2BQ9UPU7 963 aa9.58□□□□□ -0.88
LIMA1-216ENST00000552909 C20orf194Q5TEA3 1177 aa9.57□□□□□ -0.88
LIMA1-216ENST00000552909 BCL2L12Q9HB09 334 aa9.57□□□□□ -0.88
LIMA1-216ENST00000552909 ZPR1O75312 459 aa9.57□□□□□ -0.88
LIMA1-216ENST00000552909 IL6STP40189 918 aaPredicted RBP9.57□□□□□ -0.88
LIMA1-216ENST00000552909 SLFN5Q08AF3 891 aa9.57□□□□□ -0.88
LIMA1-216ENST00000552909 NLGN1Q8N2Q7 840 aa9.57□□□□□ -0.88
LIMA1-216ENST00000552909 NLGN2Q8NFZ4 835 aa9.57□□□□□ -0.88
LIMA1-216ENST00000552909 CFAP44Q96MT7 982 aa9.57□□□□□ -0.88
LIMA1-216ENST00000552909 SLKQ9H2G2 1235 aaPredicted RBP9.57□□□□□ -0.88
LIMA1-216ENST00000552909 SPINK5Q9NQ38 1064 aaPredicted RBP9.57□□□□□ -0.88
LIMA1-216ENST00000552909 NARFQ9UHQ1 456 aa9.57□□□□□ -0.88
LIMA1-216ENST00000552909 TPM2P07951 284 aa9.56□□□□□ -0.88
LIMA1-216ENST00000552909 ZNF853P0CG23 659 aa9.56□□□□□ -0.88
LIMA1-216ENST00000552909 NECTIN2Q92692 538 aa9.56□□□□□ -0.88
LIMA1-216ENST00000552909 PDCL3Q9H2J4 239 aa9.56□□□□□ -0.88
LIMA1-216ENST00000552909 MBIPQ9NS73 344 aa9.56□□□□□ -0.88
LIMA1-216ENST00000552909 EIF2S2P20042 333 aaKnown RBP9.56□□□□□ -0.88
LIMA1-216ENST00000552909 DDR1Q08345 913 aa9.56□□□□□ -0.88
LIMA1-216ENST00000552909 CCDC27Q2M243 656 aa9.56□□□□□ -0.88
LIMA1-216ENST00000552909 PANK2Q9BZ23 570 aa9.56□□□□□ -0.88
LIMA1-216ENST00000552909 BABAM1Q9NWV8 329 aa9.56□□□□□ -0.88
LIMA1-216ENST00000552909 TM4SF1P30408 202 aa9.55□□□□□ -0.88
LIMA1-216ENST00000552909 DUSP27Q5VZP5 1158 aa9.55□□□□□ -0.88
LIMA1-216ENST00000552909 WDR63Q8IWG1 891 aa9.55□□□□□ -0.88
LIMA1-216ENST00000552909 E9PSI1 815 aa9.54□□□□□ -0.88
LIMA1-216ENST00000552909 ANXA1P04083 346 aa9.54□□□□□ -0.88
LIMA1-216ENST00000552909 MYL6BP14649 208 aa9.54□□□□□ -0.88
LIMA1-216ENST00000552909 MRE11P49959 708 aa9.54□□□□□ -0.88
LIMA1-216ENST00000552909 NFIXQ14938 502 aa9.54□□□□□ -0.88
LIMA1-216ENST00000552909 NCBP3Q53F19 620 aaKnown RBP9.54□□□□□ -0.88
LIMA1-216ENST00000552909 DZIP3Q86Y13 1208 aaKnown RBP9.54□□□□□ -0.88
LIMA1-216ENST00000552909 ESPNB1AK53 854 aa9.54□□□□□ -0.88
LIMA1-216ENST00000552909 ELL2O00472 640 aaPredicted RBP9.54□□□□□ -0.88
LIMA1-216ENST00000552909 CAMTA2O94983 1202 aa9.54□□□□□ -0.88
LIMA1-216ENST00000552909 CALD1Q05682 793 aaKnown RBP9.54□□□□□ -0.88
LIMA1-216ENST00000552909 PDIA6Q15084 440 aa9.54□□□□□ -0.88
LIMA1-216ENST00000552909 PROSER3Q2NL68 480 aa9.54□□□□□ -0.88
LIMA1-216ENST00000552909 BICDL1Q6ZP65 573 aa9.54□□□□□ -0.88
LIMA1-216ENST00000552909 TRMT2AQ8IZ69 625 aaKnown RBP9.54□□□□□ -0.88
LIMA1-216ENST00000552909 GOLGA6L2Q8N9W4 650 aaPredicted RBP9.54□□□□□ -0.88
LIMA1-216ENST00000552909 TSR2Q969E8 191 aaKnown RBP9.54□□□□□ -0.88
LIMA1-216ENST00000552909 ANTXR1Q9H6X2 564 aa9.54□□□□□ -0.88
LIMA1-216ENST00000552909 IFT57Q9NWB7 429 aa9.54□□□□□ -0.88
LIMA1-216ENST00000552909 WWC3Q9ULE0 1092 aa9.54□□□□□ -0.88
LIMA1-216ENST00000552909 LAMB4A4D0S4 1761 aa9.53□□□□□ -0.88
LIMA1-216ENST00000552909 POLRMTO00411 1230 aaKnown RBP9.53□□□□□ -0.88
LIMA1-216ENST00000552909 TBC1D9BQ66K14 1250 aa9.53□□□□□ -0.88
LIMA1-216ENST00000552909 A0A087WZG4 1122 aa9.53□□□□□ -0.88
LIMA1-216ENST00000552909 GNAI1P63096 354 aa9.53□□□□□ -0.88
LIMA1-216ENST00000552909 TTLL7Q6ZT98 887 aa9.53□□□□□ -0.88
LIMA1-216ENST00000552909 LRP10Q7Z4F1 713 aa9.53□□□□□ -0.88
LIMA1-216ENST00000552909 C8orf58Q8NAV2 365 aa9.53□□□□□ -0.88
LIMA1-216ENST00000552909 MYH16Q9H6N6 1097 aa9.53□□□□□ -0.88
LIMA1-216ENST00000552909 PARP3Q9Y6F1 533 aa9.53□□□□□ -0.88
LIMA1-216ENST00000552909 HLFQ16534 295 aa9.52□□□□□ -0.89
LIMA1-216ENST00000552909 TSPYL6Q8N831 410 aa9.52□□□□□ -0.89
LIMA1-216ENST00000552909 CD2APQ9Y5K6 639 aa9.52□□□□□ -0.89
LIMA1-216ENST00000552909 GZF1Q9H116 711 aaPredicted RBP9.51□□□□□ -0.89
LIMA1-216ENST00000552909 MCM4P33991 863 aa9.51□□□□□ -0.89
LIMA1-216ENST00000552909 CCDC24Q8N4L8 307 aa9.51□□□□□ -0.89
LIMA1-216ENST00000552909 AFDNP55196 1824 aaKnown RBP9.51□□□□□ -0.89
LIMA1-216ENST00000552909 A0A0G2JLW4 131 aa9.5□□□□□ -0.89
LIMA1-216ENST00000552909 SERPINB2P05120 415 aa9.5□□□□□ -0.89
LIMA1-216ENST00000552909 HDGFL1Q5TGJ6 251 aa9.5□□□□□ -0.89
LIMA1-216ENST00000552909 TRIM44Q96DX7 344 aaPredicted RBP9.5□□□□□ -0.89
LIMA1-216ENST00000552909 CHPF2Q9P2E5 772 aa9.5□□□□□ -0.89
LIMA1-216ENST00000552909 ISY1Q9ULR0 285 aaKnown RBP9.5□□□□□ -0.89
LIMA1-216ENST00000552909 SCN7AQ01118 1682 aa9.5□□□□□ -0.89
LIMA1-216ENST00000552909 ZBTB3Q9H5J0 574 aa9.5□□□□□ -0.89
LIMA1-216ENST00000552909 GRPEL1Q9HAV7 217 aa9.5□□□□□ -0.89
LIMA1-216ENST00000552909 BCORQ6W2J9 1755 aa9.49□□□□□ -0.89
LIMA1-216ENST00000552909 N4BP2Q86UW6 1770 aaPredicted RBP9.49□□□□□ -0.89
LIMA1-216ENST00000552909 TRAK2O60296 914 aa9.49□□□□□ -0.89
LIMA1-216ENST00000552909 YBX3P16989 372 aaKnown RBP eCLIP9.49□□□□□ -0.89
LIMA1-216ENST00000552909 AIMP1Q12904 312 aaKnown RBP9.49□□□□□ -0.89
LIMA1-216ENST00000552909 COPS6Q7L5N1 327 aa9.49□□□□□ -0.89
LIMA1-216ENST00000552909 UPF2Q9HAU5 1272 aaKnown RBP9.49□□□□□ -0.89
Retrieved 100 of 20,778 RNA–protein pairs in 19.1 ms