RNA–Protein interactions for RNA: ENST00000551623.1

PTCH1-223, Transcript of patched 1, human

TSL 1 (best)

Gene PTCH1, Length 366 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
PTCH1-223	ENST00000551623	KRTAP4-9	Q9BYQ8	210 aa		4.87	□□□□□ -1.63
PTCH1-223	ENST00000551623	STARD13	Q9Y3M8	1113 aa		4.87	□□□□□ -1.63
PTCH1-223	ENST00000551623	ZNF330	Q9Y3S2	320 aa	Predicted RBP	4.87	□□□□□ -1.63
PTCH1-223	ENST00000551623	RIMBP3C	A6NJZ7	1639 aa		4.86	□□□□□ -1.63
PTCH1-223	ENST00000551623	RIMBP3B	A6NNM3	1639 aa		4.86	□□□□□ -1.63
PTCH1-223	ENST00000551623	RIMBP3	Q9UFD9	1639 aa		4.86	□□□□□ -1.63
PTCH1-223	ENST00000551623	KIF21A	Q7Z4S6	1674 aa		4.86	□□□□□ -1.63
PTCH1-223	ENST00000551623	EFS	O43281	561 aa		4.86	□□□□□ -1.63
PTCH1-223	ENST00000551623	SIN3B	O75182	1162 aa		4.86	□□□□□ -1.63
PTCH1-223	ENST00000551623	NRG1	Q02297	640 aa	Predicted RBP	4.86	□□□□□ -1.63
PTCH1-223	ENST00000551623	FZD5	Q13467	585 aa		4.86	□□□□□ -1.63
PTCH1-223	ENST00000551623	NBPF1	Q3BBV0	1214 aa		4.86	□□□□□ -1.63
PTCH1-223	ENST00000551623	SAMD5	Q5TGI4	173 aa		4.86	□□□□□ -1.63
PTCH1-223	ENST00000551623	GJD4	Q96KN9	370 aa	Predicted RBP	4.86	□□□□□ -1.63
PTCH1-223	ENST00000551623	GJA3	Q9Y6H8	435 aa		4.86	□□□□□ -1.63
PTCH1-223	ENST00000551623	TRAPPC3L	Q5T215	181 aa		4.85	□□□□□ -1.63
PTCH1-223	ENST00000551623	TNFRSF25	Q93038	417 aa		4.85	□□□□□ -1.63
PTCH1-223	ENST00000551623	LENG1	Q96BZ8	264 aa	Predicted RBP	4.85	□□□□□ -1.63
PTCH1-223	ENST00000551623	ZIC5	Q96T25	663 aa		4.85	□□□□□ -1.63
PTCH1-223	ENST00000551623	SSBP4	Q9BWG4	385 aa	Predicted RBP	4.85	□□□□□ -1.63
PTCH1-223	ENST00000551623	SLC24A3	Q9HC58	644 aa		4.85	□□□□□ -1.63
PTCH1-223	ENST00000551623	PCMTD2	Q9NV79	361 aa		4.85	□□□□□ -1.63
PTCH1-223	ENST00000551623	ARHGEF11	O15085	1522 aa		4.85	□□□□□ -1.63
PTCH1-223	ENST00000551623	SMARCA4	P51532	1647 aa		4.85	□□□□□ -1.63
PTCH1-223	ENST00000551623	BAZ1B	Q9UIG0	1483 aa	Known RBP	4.84	□□□□□ -1.63
PTCH1-223	ENST00000551623	TAT	P17735	454 aa	Predicted RBP	4.84	□□□□□ -1.63
PTCH1-223	ENST00000551623	SHISA2	Q6UWI4	295 aa		4.84	□□□□□ -1.63
PTCH1-223	ENST00000551623	ZDHHC3	Q9NYG2	299 aa		4.84	□□□□□ -1.63
PTCH1-223	ENST00000551623	CADPS	Q9ULU8	1353 aa		4.83	□□□□□ -1.64
PTCH1-223	ENST00000551623		A0A0A0MRY4	1105 aa		4.83	□□□□□ -1.64
PTCH1-223	ENST00000551623	IRAK1	P51617	712 aa		4.83	□□□□□ -1.64
PTCH1-223	ENST00000551623	C20orf204	Q6ZNR8	217 aa		4.83	□□□□□ -1.64
PTCH1-223	ENST00000551623	INHA	P05111	366 aa		4.82	□□□□□ -1.64
PTCH1-223	ENST00000551623	ADH7	P40394	386 aa		4.82	□□□□□ -1.64
PTCH1-223	ENST00000551623	USP4	Q13107	963 aa		4.82	□□□□□ -1.64
PTCH1-223	ENST00000551623	ZNF295-AS1	Q8N0V1	137 aa		4.82	□□□□□ -1.64
PTCH1-223	ENST00000551623	DDRGK1	Q96HY6	314 aa		4.82	□□□□□ -1.64
PTCH1-223	ENST00000551623	CEP126	Q9P2H0	1117 aa		4.82	□□□□□ -1.64
PTCH1-223	ENST00000551623	SCNN1D	P51172	638 aa		4.81	□□□□□ -1.64
PTCH1-223	ENST00000551623	SMTN	P53814	917 aa		4.81	□□□□□ -1.64
PTCH1-223	ENST00000551623	RAC1	P63000	192 aa		4.81	□□□□□ -1.64
PTCH1-223	ENST00000551623	TMEM259	Q4ZIN3	620 aa		4.81	□□□□□ -1.64
PTCH1-223	ENST00000551623	BICDL1	Q6ZP65	573 aa		4.81	□□□□□ -1.64
PTCH1-223	ENST00000551623	KRTAP4-2	Q9BYR5	136 aa		4.81	□□□□□ -1.64
PTCH1-223	ENST00000551623	USP21	Q9UK80	565 aa		4.81	□□□□□ -1.64
PTCH1-223	ENST00000551623	RNF114	Q9Y508	228 aa		4.81	□□□□□ -1.64
PTCH1-223	ENST00000551623	LILRB5	O75023	590 aa		4.8	□□□□□ -1.64
PTCH1-223	ENST00000551623	TAL1	P17542	331 aa	Predicted RBP	4.8	□□□□□ -1.64
PTCH1-223	ENST00000551623	GDF10	P55107	478 aa		4.8	□□□□□ -1.64
PTCH1-223	ENST00000551623	SLC30A3	Q99726	388 aa		4.8	□□□□□ -1.64
PTCH1-223	ENST00000551623	FAM117A	Q9C073	453 aa		4.8	□□□□□ -1.64
PTCH1-223	ENST00000551623	DOLK	Q9UPQ8	538 aa		4.8	□□□□□ -1.64
PTCH1-223	ENST00000551623	TSGA10IP	Q3SY00	556 aa		4.79	□□□□□ -1.64
PTCH1-223	ENST00000551623	IQSEC3	Q9UPP2	1182 aa	Predicted RBP	4.79	□□□□□ -1.64
PTCH1-223	ENST00000551623	ARAP1	Q96P48	1450 aa		4.79	□□□□□ -1.64
PTCH1-223	ENST00000551623	CEP164	Q9UPV0	1460 aa		4.79	□□□□□ -1.64
PTCH1-223	ENST00000551623	RSF1	Q96T23	1441 aa	Predicted RBP	4.79	□□□□□ -1.64
PTCH1-223	ENST00000551623	GPR37L1	O60883	481 aa		4.78	□□□□□ -1.64
PTCH1-223	ENST00000551623	SSTR4	P31391	388 aa		4.78	□□□□□ -1.64
PTCH1-223	ENST00000551623	SFSWAP	Q12872	951 aa	Known RBP	4.78	□□□□□ -1.64
PTCH1-223	ENST00000551623	FMR1NB	Q8N0W7	255 aa	Predicted RBP	4.78	□□□□□ -1.64
PTCH1-223	ENST00000551623	SIRT1	Q96EB6	747 aa		4.78	□□□□□ -1.64
PTCH1-223	ENST00000551623	CABP1	Q9NZU7	370 aa		4.78	□□□□□ -1.64
PTCH1-223	ENST00000551623	CDK2AP1	O14519	115 aa		4.77	□□□□□ -1.65
PTCH1-223	ENST00000551623	CD97	P48960	835 aa		4.77	□□□□□ -1.65
PTCH1-223	ENST00000551623	SPEM2	Q0P670	501 aa		4.77	□□□□□ -1.65
PTCH1-223	ENST00000551623	NEUROD1	Q13562	356 aa		4.77	□□□□□ -1.65
PTCH1-223	ENST00000551623	MTFR1	Q15390	333 aa		4.77	□□□□□ -1.65
PTCH1-223	ENST00000551623	OXLD1	Q5BKU9	147 aa		4.77	□□□□□ -1.65
PTCH1-223	ENST00000551623	PRR23C	Q6ZRP0	262 aa		4.77	□□□□□ -1.65
PTCH1-223	ENST00000551623	RAB44	Q7Z6P3	723 aa	Predicted RBP	4.77	□□□□□ -1.65
PTCH1-223	ENST00000551623	WFDC12	Q8WWY7	111 aa		4.77	□□□□□ -1.65
PTCH1-223	ENST00000551623	KDM4C	Q9H3R0	1056 aa		4.77	□□□□□ -1.65
PTCH1-223	ENST00000551623	USP3	Q9Y6I4	520 aa		4.77	□□□□□ -1.65
PTCH1-223	ENST00000551623		A6NJY4	79 aa		4.76	□□□□□ -1.65
PTCH1-223	ENST00000551623	TXLNA	P40222	546 aa		4.76	□□□□□ -1.65
PTCH1-223	ENST00000551623	IREB2	P48200	963 aa	Known RBP	4.76	□□□□□ -1.65
PTCH1-223	ENST00000551623	LRRC69	Q6ZNQ3	347 aa		4.76	□□□□□ -1.65
PTCH1-223	ENST00000551623	PHTF2	Q8N3S3	785 aa		4.76	□□□□□ -1.65
PTCH1-223	ENST00000551623	JPH1	Q9HDC5	661 aa	Predicted RBP	4.76	□□□□□ -1.65
PTCH1-223	ENST00000551623	SERTAD1	Q9UHV2	236 aa		4.76	□□□□□ -1.65
PTCH1-223	ENST00000551623	PARP3	Q9Y6F1	533 aa		4.76	□□□□□ -1.65
PTCH1-223	ENST00000551623	OAS3	Q9Y6K5	1087 aa	Known RBP	4.76	□□□□□ -1.65
PTCH1-223	ENST00000551623	FANCD2	Q9BXW9	1451 aa		4.75	□□□□□ -1.65
PTCH1-223	ENST00000551623	GP2	P55259	537 aa	Known RBP	4.75	□□□□□ -1.65
PTCH1-223	ENST00000551623	SLC51A	Q86UW1	340 aa		4.75	□□□□□ -1.65
PTCH1-223	ENST00000551623	SLC4A9	Q96Q91	983 aa		4.75	□□□□□ -1.65
PTCH1-223	ENST00000551623	GPBP1L1	Q9HC44	474 aa	Predicted RBP	4.75	□□□□□ -1.65
PTCH1-223	ENST00000551623	URB2	Q14146	1524 aa	Known RBP	4.75	□□□□□ -1.65
PTCH1-223	ENST00000551623	CFTR	P13569	1480 aa		4.75	□□□□□ -1.65
PTCH1-223	ENST00000551623	TMEM229A	B2RXF0	380 aa		4.74	□□□□□ -1.65
PTCH1-223	ENST00000551623	FST	P19883	344 aa		4.74	□□□□□ -1.65
PTCH1-223	ENST00000551623	NOS3	P29474	1203 aa		4.74	□□□□□ -1.65
PTCH1-223	ENST00000551623	AFF1	P51825	1210 aa	Known RBP	4.74	□□□□□ -1.65
PTCH1-223	ENST00000551623	SLFNL1	Q499Z3	407 aa		4.74	□□□□□ -1.65
PTCH1-223	ENST00000551623	ILDR2	Q71H61	639 aa		4.74	□□□□□ -1.65
PTCH1-223	ENST00000551623	DMRTC2	Q8IXT2	367 aa	Predicted RBP	4.74	□□□□□ -1.65
PTCH1-223	ENST00000551623	NUDT8	Q8WV74	236 aa		4.74	□□□□□ -1.65
PTCH1-223	ENST00000551623	MEGF10	Q96KG7	1140 aa		4.74	□□□□□ -1.65
PTCH1-223	ENST00000551623	NDUFB9	Q9Y6M9	179 aa		4.74	□□□□□ -1.65

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