RNA–Protein interactions for RNA: ENST00000550592.1

LIMA1-205, Transcript of LIM domain and actin binding 1, humanhuman

TSL 4

Gene LIMA1, Length 567 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-205ENST00000550592 CITED4Q96RK1 184 aa8.39□□□□□ -1.07
LIMA1-205ENST00000550592 RBCK1Q9BYM8 510 aa8.39□□□□□ -1.07
LIMA1-205ENST00000550592 FIGNL2A6NMB9 653 aa8.38□□□□□ -1.07
LIMA1-205ENST00000550592 FZD6O60353 706 aa8.38□□□□□ -1.07
LIMA1-205ENST00000550592 TATP17735 454 aaPredicted RBP8.38□□□□□ -1.07
LIMA1-205ENST00000550592 HIF1AQ16665 826 aa8.38□□□□□ -1.07
LIMA1-205ENST00000550592 ZSCAN29Q8IWY8 852 aaPredicted RBP8.38□□□□□ -1.07
LIMA1-205ENST00000550592 RHPN1Q8TCX5 695 aa8.38□□□□□ -1.07
LIMA1-205ENST00000550592 TIMMDC1Q9NPL8 285 aa8.38□□□□□ -1.07
LIMA1-205ENST00000550592 BRPF3Q9ULD4 1205 aa8.38□□□□□ -1.07
LIMA1-205ENST00000550592 BCS1LQ9Y276 419 aa8.38□□□□□ -1.07
LIMA1-205ENST00000550592 A0A1B0GTH6 734 aa8.37□□□□□ -1.07
LIMA1-205ENST00000550592 NDUFB5O43674 189 aa8.37□□□□□ -1.07
LIMA1-205ENST00000550592 RHOQP17081 205 aa8.37□□□□□ -1.07
LIMA1-205ENST00000550592 ATP4AP20648 1035 aa8.37□□□□□ -1.07
LIMA1-205ENST00000550592 NPAS4Q8IUM7 802 aa8.37□□□□□ -1.07
LIMA1-205ENST00000550592 RGL4Q8IZJ4 473 aa8.37□□□□□ -1.07
LIMA1-205ENST00000550592 CCDC87Q9NVE4 849 aa8.37□□□□□ -1.07
LIMA1-205ENST00000550592 RBM47A0AV96 593 aaKnown RBP8.36□□□□□ -1.07
LIMA1-205ENST00000550592 MSX1P28360 303 aa8.36□□□□□ -1.07
LIMA1-205ENST00000550592 AAMPQ13685 434 aa8.36□□□□□ -1.07
LIMA1-205ENST00000550592 SUSD3Q96L08 255 aa8.36□□□□□ -1.07
LIMA1-205ENST00000550592 AAASQ9NRG9 546 aa8.36□□□□□ -1.07
LIMA1-205ENST00000550592 ANKIB1Q9P2G1 1089 aa8.36□□□□□ -1.07
LIMA1-205ENST00000550592 TGFBR3LH3BV60 316 aa8.35□□□□□ -1.07
LIMA1-205ENST00000550592 ZAP70P43403 619 aa8.35□□□□□ -1.07
LIMA1-205ENST00000550592 COL19A1Q14993 1142 aa8.35□□□□□ -1.07
LIMA1-205ENST00000550592 IER5Q5VY09 327 aa8.35□□□□□ -1.07
LIMA1-205ENST00000550592 BICDL1Q6ZP65 573 aa8.35□□□□□ -1.07
LIMA1-205ENST00000550592 ATCAYQ86WG3 371 aa8.35□□□□□ -1.07
LIMA1-205ENST00000550592 TREML1Q86YW5 311 aa8.35□□□□□ -1.07
LIMA1-205ENST00000550592 KLRG1Q96E93 195 aa8.35□□□□□ -1.07
LIMA1-205ENST00000550592 ZIC5Q96T25 663 aa8.35□□□□□ -1.07
LIMA1-205ENST00000550592 ATP13A2Q9NQ11 1180 aa8.35□□□□□ -1.07
LIMA1-205ENST00000550592 DMGDHQ9UI17 866 aaKnown RBP8.35□□□□□ -1.07
LIMA1-205ENST00000550592 DNMT3LQ9UJW3 386 aa8.35□□□□□ -1.07
LIMA1-205ENST00000550592 MICAL2O94851 1124 aa8.34□□□□□ -1.07
LIMA1-205ENST00000550592 MZF1P28698 734 aaPredicted RBP8.34□□□□□ -1.07
LIMA1-205ENST00000550592 ZNF800Q2TB10 664 aaPredicted RBP eCLIP8.34□□□□□ -1.07
LIMA1-205ENST00000550592 TMC7Q7Z402 723 aa8.34□□□□□ -1.07
LIMA1-205ENST00000550592 ZNF280CQ8ND82 737 aa8.34□□□□□ -1.07
LIMA1-205ENST00000550592 DYRK1BQ9Y463 629 aa8.34□□□□□ -1.07
LIMA1-205ENST00000550592 OPLAHO14841 1288 aa8.33□□□□□ -1.08
LIMA1-205ENST00000550592 IGHA2P01877 340 aa8.33□□□□□ -1.08
LIMA1-205ENST00000550592 ARSJQ5FYB0 599 aaPredicted RBP8.33□□□□□ -1.08
LIMA1-205ENST00000550592 ZNF428Q96B54 188 aa8.33□□□□□ -1.08
LIMA1-205ENST00000550592 FAM129BQ96TA1 746 aa8.33□□□□□ -1.08
LIMA1-205ENST00000550592 ST8SIA5O15466 376 aa8.32□□□□□ -1.08
LIMA1-205ENST00000550592 F11P03951 625 aa8.32□□□□□ -1.08
LIMA1-205ENST00000550592 USP5P45974 858 aa8.32□□□□□ -1.08
LIMA1-205ENST00000550592 RBM25P49756 843 aaKnown RBP8.32□□□□□ -1.08
LIMA1-205ENST00000550592 PDE3BQ13370 1112 aa8.32□□□□□ -1.08
LIMA1-205ENST00000550592 GJD3Q8N144 294 aa8.32□□□□□ -1.08
LIMA1-205ENST00000550592 EDEM1Q92611 657 aa8.32□□□□□ -1.08
LIMA1-205ENST00000550592 CRISPLD1Q9H336 500 aa8.32□□□□□ -1.08
LIMA1-205ENST00000550592 NEUROD4Q9HD90 331 aa8.32□□□□□ -1.08
LIMA1-205ENST00000550592 FAM13BQ9NYF5 915 aa8.32□□□□□ -1.08
LIMA1-205ENST00000550592 POLIQ9UNA4 740 aa8.32□□□□□ -1.08
LIMA1-205ENST00000550592 A0A1W2PNR3 127 aa8.31□□□□□ -1.08
LIMA1-205ENST00000550592 MAN1A2O60476 641 aa8.31□□□□□ -1.08
LIMA1-205ENST00000550592 PDGFAP04085 211 aa8.31□□□□□ -1.08
LIMA1-205ENST00000550592 DNM1Q05193 864 aaKnown RBP8.31□□□□□ -1.08
LIMA1-205ENST00000550592 HSH2DQ96JZ2 352 aa8.31□□□□□ -1.08
LIMA1-205ENST00000550592 DMRTB1Q96MA1 342 aa8.31□□□□□ -1.08
LIMA1-205ENST00000550592 BCL2L13Q9BXK5 485 aa8.31□□□□□ -1.08
LIMA1-205ENST00000550592 DACH1Q9UI36 760 aa8.31□□□□□ -1.08
LIMA1-205ENST00000550592 SENP3-EIF4A1A0A087X0R7 540 aa8.3□□□□□ -1.08
LIMA1-205ENST00000550592 TREHO43280 583 aa8.3□□□□□ -1.08
LIMA1-205ENST00000550592 INPP5BP32019 993 aa8.3□□□□□ -1.08
LIMA1-205ENST00000550592 DSC3Q14574 896 aa8.3□□□□□ -1.08
LIMA1-205ENST00000550592 LRRC69Q6ZNQ3 347 aa8.3□□□□□ -1.08
LIMA1-205ENST00000550592 BTLAQ7Z6A9 289 aa8.3□□□□□ -1.08
LIMA1-205ENST00000550592 FBXO33Q7Z6M2 555 aa8.3□□□□□ -1.08
LIMA1-205ENST00000550592 NLRP8Q86W28 1048 aa8.3□□□□□ -1.08
LIMA1-205ENST00000550592 TMC1Q8TDI8 760 aa8.3□□□□□ -1.08
LIMA1-205ENST00000550592 RPLP1P05386 114 aaKnown RBP8.29□□□□□ -1.08
LIMA1-205ENST00000550592 ZNF16P17020 682 aaPredicted RBP8.29□□□□□ -1.08
LIMA1-205ENST00000550592 IDH3AP50213 366 aa8.29□□□□□ -1.08
LIMA1-205ENST00000550592 PLCB3Q01970 1234 aa8.29□□□□□ -1.08
LIMA1-205ENST00000550592 GPR152Q8TDT2 470 aa8.29□□□□□ -1.08
LIMA1-205ENST00000550592 PIK3R5Q8WYR1 880 aa8.29□□□□□ -1.08
LIMA1-205ENST00000550592 ALKBH8Q96BT7 664 aaKnown RBP8.29□□□□□ -1.08
LIMA1-205ENST00000550592 GPR182O15218 404 aa8.28□□□□□ -1.08
LIMA1-205ENST00000550592 PCSK2P16519 638 aa8.28□□□□□ -1.08
LIMA1-205ENST00000550592 FMR1Q06787 632 aaKnown RBP eCLIP8.28□□□□□ -1.08
LIMA1-205ENST00000550592 PGBD3Q8N328 593 aa8.28□□□□□ -1.08
LIMA1-205ENST00000550592 NUDT16Q96DE0 195 aaKnown RBP8.28□□□□□ -1.08
LIMA1-205ENST00000550592 RUBCNLQ9H714 662 aa8.28□□□□□ -1.08
LIMA1-205ENST00000550592 GPAMQ9HCL2 828 aa8.28□□□□□ -1.08
LIMA1-205ENST00000550592 SLC35F4A4IF30 521 aa8.27□□□□□ -1.09
LIMA1-205ENST00000550592 RANGAP1P46060 587 aaPredicted RBP8.27□□□□□ -1.09
LIMA1-205ENST00000550592 ARSDP51689 593 aa8.27□□□□□ -1.09
LIMA1-205ENST00000550592 EHHADHQ08426 723 aa8.27□□□□□ -1.09
LIMA1-205ENST00000550592 LBRQ14739 615 aaKnown RBP8.27□□□□□ -1.09
LIMA1-205ENST00000550592 EAPPQ56P03 285 aaPredicted RBP8.27□□□□□ -1.09
LIMA1-205ENST00000550592 SAMD5Q5TGI4 173 aa8.27□□□□□ -1.09
LIMA1-205ENST00000550592 GIPC2Q8TF65 315 aa8.27□□□□□ -1.09
LIMA1-205ENST00000550592 KIFC2Q96AC6 838 aa8.27□□□□□ -1.09
LIMA1-205ENST00000550592 GAS2L1Q99501 681 aaPredicted RBP8.27□□□□□ -1.09
LIMA1-205ENST00000550592 IRX2Q9BZI1 471 aaPredicted RBP8.27□□□□□ -1.09
Retrieved 100 of 20,778 RNA–protein pairs in 21.2 ms