RNA–Protein interactions for RNA: ENST00000550280.1

SMARCD1-208, Transcript of SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily d, member 1, humanhuman

TSL 2

Gene SMARCD1, Length 567 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMARCD1-208ENST00000550280 NBPF10Q6P3W6 841 aaKnown RBP15.55■□□□□ 0.08
SMARCD1-208ENST00000550280 NBPF15Q8N660 670 aa15.55■□□□□ 0.08
SMARCD1-208ENST00000550280 CNBD1Q8NA66 436 aa15.55■□□□□ 0.08
SMARCD1-208ENST00000550280 C7orf43Q8WVR3 580 aa15.55■□□□□ 0.08
SMARCD1-208ENST00000550280 PPP2R1AP30153 589 aa15.54■□□□□ 0.08
SMARCD1-208ENST00000550280 PRPF40BQ6NWY9 871 aaKnown RBP15.54■□□□□ 0.08
SMARCD1-208ENST00000550280 SETDB2Q96T68 719 aa15.54■□□□□ 0.08
SMARCD1-208ENST00000550280 ERFEQ4G0M1 354 aa15.53■□□□□ 0.08
SMARCD1-208ENST00000550280 STYK1Q6J9G0 422 aa15.53■□□□□ 0.08
SMARCD1-208ENST00000550280 PDZRN3Q9UPQ7 1066 aa15.53■□□□□ 0.08
SMARCD1-208ENST00000550280 DICER1Q9UPY3 1922 aaKnown RBP15.53■□□□□ 0.08
SMARCD1-208ENST00000550280 ARFGEF2Q9Y6D5 1785 aa15.52■□□□□ 0.08
SMARCD1-208ENST00000550280 DDNO94850 711 aaPredicted RBP15.52■□□□□ 0.08
SMARCD1-208ENST00000550280 OLFM4Q6UX06 510 aa15.52■□□□□ 0.08
SMARCD1-208ENST00000550280 TAOK3Q9H2K8 898 aa15.52■□□□□ 0.08
SMARCD1-208ENST00000550280 KLRG2A4D1S0 409 aaPredicted RBP15.51■□□□□ 0.07
SMARCD1-208ENST00000550280 CNKSR1Q969H4 720 aa15.51■□□□□ 0.07
SMARCD1-208ENST00000550280 MASTLQ96GX5 879 aa15.51■□□□□ 0.07
SMARCD1-208ENST00000550280 SNRPA1P09661 255 aaKnown RBP15.5■□□□□ 0.07
SMARCD1-208ENST00000550280 U2AF1L5P0DN76 240 aaPredicted RBP15.5■□□□□ 0.07
SMARCD1-208ENST00000550280 ST5P78524 1137 aa15.5■□□□□ 0.07
SMARCD1-208ENST00000550280 U2AF1Q01081 240 aaKnown RBP eCLIP15.5■□□□□ 0.07
SMARCD1-208ENST00000550280 HLFQ16534 295 aa15.5■□□□□ 0.07
SMARCD1-208ENST00000550280 CLEC4GQ6UXB4 293 aa15.5■□□□□ 0.07
SMARCD1-208ENST00000550280 CACNA1SQ13698 1873 aa15.5■□□□□ 0.07
SMARCD1-208ENST00000550280 SNED1Q8TER0 1413 aa15.5■□□□□ 0.07
SMARCD1-208ENST00000550280 DPY19L2Q6NUT2 758 aa15.49■□□□□ 0.07
SMARCD1-208ENST00000550280 CFAP53Q96M91 514 aa15.49■□□□□ 0.07
SMARCD1-208ENST00000550280 MIS18AQ9NYP9 233 aa15.49■□□□□ 0.07
SMARCD1-208ENST00000550280 HSPA1AP0DMV8 641 aaKnown RBP15.48■□□□□ 0.07
SMARCD1-208ENST00000550280 HSPA1BP0DMV9 641 aaKnown RBP15.48■□□□□ 0.07
SMARCD1-208ENST00000550280 SLC51AQ86UW1 340 aa15.48■□□□□ 0.07
SMARCD1-208ENST00000550280 NBPF5PQ86XG9 351 aaPredicted RBP15.48■□□□□ 0.07
SMARCD1-208ENST00000550280 ZNF541Q9H0D2 1346 aa15.47■□□□□ 0.07
SMARCD1-208ENST00000550280 NUDCQ9Y266 331 aa15.47■□□□□ 0.07
SMARCD1-208ENST00000550280 ABCC12Q96J65 1359 aa15.47■□□□□ 0.07
SMARCD1-208ENST00000550280 FAM177BA6PVY3 158 aa15.46■□□□□ 0.07
SMARCD1-208ENST00000550280 NPHP1O15259 732 aa15.46■□□□□ 0.07
SMARCD1-208ENST00000550280 HTATSF1O43719 755 aaKnown RBP15.46■□□□□ 0.07
SMARCD1-208ENST00000550280 CHADLQ6NUI6 762 aa15.46■□□□□ 0.07
SMARCD1-208ENST00000550280 RTF1Q92541 710 aaKnown RBP15.46■□□□□ 0.07
SMARCD1-208ENST00000550280 L3MBTL3Q96JM7 780 aaPredicted RBP15.46■□□□□ 0.07
SMARCD1-208ENST00000550280 NIP7Q9Y221 180 aaKnown RBP eCLIP15.46■□□□□ 0.07
SMARCD1-208ENST00000550280 PASKQ96RG2 1323 aa15.45■□□□□ 0.06
SMARCD1-208ENST00000550280 COL4A5P29400 1685 aa15.45■□□□□ 0.06
SMARCD1-208ENST00000550280 RGL2O15211 777 aa15.45■□□□□ 0.06
SMARCD1-208ENST00000550280 NPR1P16066 1061 aa15.45■□□□□ 0.06
SMARCD1-208ENST00000550280 FKBP4Q02790 459 aaKnown RBP eCLIP15.45■□□□□ 0.06
SMARCD1-208ENST00000550280 TAF7Q15545 349 aaPredicted RBP15.45■□□□□ 0.06
SMARCD1-208ENST00000550280 CCDC93Q567U6 631 aa15.45■□□□□ 0.06
SMARCD1-208ENST00000550280 NPM2Q86SE8 214 aaKnown RBP15.45■□□□□ 0.06
SMARCD1-208ENST00000550280 ZNF277Q9NRM2 450 aaPredicted RBP15.45■□□□□ 0.06
SMARCD1-208ENST00000550280 SOGA3Q5TF21 947 aa15.44■□□□□ 0.06
SMARCD1-208ENST00000550280 PLEKHF1Q96S99 279 aa15.44■□□□□ 0.06
SMARCD1-208ENST00000550280 TAF1DQ9H5J8 278 aaPredicted RBP15.44■□□□□ 0.06
SMARCD1-208ENST00000550280 ZNF652Q9Y2D9 606 aa15.44■□□□□ 0.06
SMARCD1-208ENST00000550280 LAMB4A4D0S4 1761 aa15.44■□□□□ 0.06
SMARCD1-208ENST00000550280 KDM3BQ7LBC6 1761 aa15.44■□□□□ 0.06
SMARCD1-208ENST00000550280 ADAMTSL1Q8N6G6 1762 aa15.44■□□□□ 0.06
SMARCD1-208ENST00000550280 TPTE2Q6XPS3 522 aa15.43■□□□□ 0.06
SMARCD1-208ENST00000550280 TTLL7Q6ZT98 887 aa15.43■□□□□ 0.06
SMARCD1-208ENST00000550280 TNS4Q8IZW8 715 aa15.43■□□□□ 0.06
SMARCD1-208ENST00000550280 THUMPD2Q9BTF0 503 aaKnown RBP15.43■□□□□ 0.06
SMARCD1-208ENST00000550280 CREBZFQ9NS37 354 aa15.43■□□□□ 0.06
SMARCD1-208ENST00000550280 MKRN1Q9UHC7 482 aaKnown RBP15.43■□□□□ 0.06
SMARCD1-208ENST00000550280 UBN2Q6ZU65 1347 aa15.43■□□□□ 0.06
SMARCD1-208ENST00000550280 ITGBL1O95965 494 aaPredicted RBP15.42■□□□□ 0.06
SMARCD1-208ENST00000550280 EIF4A1P60842 406 aaKnown RBP15.42■□□□□ 0.06
SMARCD1-208ENST00000550280 CRY2Q49AN0 593 aa15.42■□□□□ 0.06
SMARCD1-208ENST00000550280 NUTM1Q86Y26 1132 aa15.42■□□□□ 0.06
SMARCD1-208ENST00000550280 FZD9O00144 591 aa15.41■□□□□ 0.06
SMARCD1-208ENST00000550280 CAPN15O75808 1086 aa15.41■□□□□ 0.06
SMARCD1-208ENST00000550280 NGEFQ8N5V2 710 aa15.41■□□□□ 0.06
SMARCD1-208ENST00000550280 CNTNAP1P78357 1384 aa15.4■□□□□ 0.06
SMARCD1-208ENST00000550280 C3orf67Q6ZVT6 689 aa15.4■□□□□ 0.06
SMARCD1-208ENST00000550280 LRP10Q7Z4F1 713 aa15.4■□□□□ 0.06
SMARCD1-208ENST00000550280 LDHDQ86WU2 507 aa15.4■□□□□ 0.06
SMARCD1-208ENST00000550280 SYNE4Q8N205 404 aa15.4■□□□□ 0.06
SMARCD1-208ENST00000550280 DLG5Q8TDM6 1919 aa15.4■□□□□ 0.06
SMARCD1-208ENST00000550280 MAP3K15Q6ZN16 1313 aa15.4■□□□□ 0.06
SMARCD1-208ENST00000550280 SCN4AP35499 1836 aa15.39■□□□□ 0.05
SMARCD1-208ENST00000550280 IQCA1LA6NCM1 817 aa15.39■□□□□ 0.05
SMARCD1-208ENST00000550280 ERVV-1B6SEH8 477 aa15.39■□□□□ 0.05
SMARCD1-208ENST00000550280 IARSP41252 1262 aaKnown RBP15.39■□□□□ 0.05
SMARCD1-208ENST00000550280 RNF123Q5XPI4 1314 aa15.39■□□□□ 0.05
SMARCD1-208ENST00000550280 LTBP1Q14766 1721 aa15.38■□□□□ 0.05
SMARCD1-208ENST00000550280 RIC1Q4ADV7 1423 aa15.38■□□□□ 0.05
SMARCD1-208ENST00000550280 SUSD4Q5VX71 490 aa15.38■□□□□ 0.05
SMARCD1-208ENST00000550280 RTKN2Q8IZC4 609 aa15.38■□□□□ 0.05
SMARCD1-208ENST00000550280 RRP7AQ9Y3A4 280 aaKnown RBP15.38■□□□□ 0.05
SMARCD1-208ENST00000550280 FOXN1O15353 648 aa15.37■□□□□ 0.05
SMARCD1-208ENST00000550280 NTSR2O95665 410 aa15.37■□□□□ 0.05
SMARCD1-208ENST00000550280 GPTP24298 496 aa15.37■□□□□ 0.05
SMARCD1-208ENST00000550280 HOXA10P31260 410 aaPredicted RBP15.37■□□□□ 0.05
SMARCD1-208ENST00000550280 EPHX2P34913 555 aa15.37■□□□□ 0.05
SMARCD1-208ENST00000550280 NFE2L2Q16236 605 aa15.37■□□□□ 0.05
SMARCD1-208ENST00000550280 ZNF34Q8IZ26 560 aa15.37■□□□□ 0.05
SMARCD1-208ENST00000550280 PSMD1Q99460 953 aa15.37■□□□□ 0.05
SMARCD1-208ENST00000550280 ZBTB3Q9H5J0 574 aa15.37■□□□□ 0.05
SMARCD1-208ENST00000550280 HACL1Q9UJ83 578 aa15.37■□□□□ 0.05
Retrieved 100 of 20,778 RNA–protein pairs in 17.9 ms