RNA–Protein interactions for RNA: ENST00000549970.5

VPS29-207, Transcript of VPS29, retromer complex component, humanhuman

TSL 3 BASIC

Gene VPS29, Length 818 nt, Biotype protein coding, Subcellular localisation Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29-207ENST00000549970 RNF181Q9P0P0 153 aa21.49■■□□□ 1.03
VPS29-207ENST00000549970 LMOD3Q0VAK6 560 aa21.48■■□□□ 1.03
VPS29-207ENST00000549970 NEUROD2Q15784 382 aa21.48■■□□□ 1.03
VPS29-207ENST00000549970 NBPF5PQ86XG9 351 aaPredicted RBP21.48■■□□□ 1.03
VPS29-207ENST00000549970 PDZRN3Q9UPQ7 1066 aa21.48■■□□□ 1.03
VPS29-207ENST00000549970 SBF1O95248 1867 aa21.47■■□□□ 1.03
VPS29-207ENST00000549970 KIF3CO14782 793 aa21.47■■□□□ 1.03
VPS29-207ENST00000549970 PRKRIP1Q9H875 184 aaPredicted RBP21.47■■□□□ 1.03
VPS29-207ENST00000549970 NIP7Q9Y221 180 aaKnown RBP eCLIP21.47■■□□□ 1.03
VPS29-207ENST00000549970 MYL6BP14649 208 aa21.46■■□□□ 1.03
VPS29-207ENST00000549970 HLFQ16534 295 aa21.46■■□□□ 1.03
VPS29-207ENST00000549970 FAM177BA6PVY3 158 aa21.45■■□□□ 1.02
VPS29-207ENST00000549970 RUNDC1Q96C34 613 aa21.45■■□□□ 1.02
VPS29-207ENST00000549970 ZNF219Q9P2Y4 722 aaPredicted RBP21.45■■□□□ 1.02
VPS29-207ENST00000549970 RGL2O15211 777 aa21.44■■□□□ 1.02
VPS29-207ENST00000549970 NMRK2Q9NPI5 230 aa21.44■■□□□ 1.02
VPS29-207ENST00000549970 ADAMTS8Q9UP79 889 aa21.44■■□□□ 1.02
VPS29-207ENST00000549970 KIF6Q6ZMV9 814 aa21.43■■□□□ 1.02
VPS29-207ENST00000549970 TTLL7Q6ZT98 887 aa21.43■■□□□ 1.02
VPS29-207ENST00000549970 C21orf2O43822 256 aa21.42■■□□□ 1.02
VPS29-207ENST00000549970 CACNA1SQ13698 1873 aa21.42■■□□□ 1.02
VPS29-207ENST00000549970 TPTE2Q6XPS3 522 aa21.42■■□□□ 1.02
VPS29-207ENST00000549970 BABAM1Q9NWV8 329 aa21.42■■□□□ 1.02
VPS29-207ENST00000549970 CEP350Q5VT06 3117 aa21.42■■□□□ 1.02
VPS29-207ENST00000549970 MAP3K15Q6ZN16 1313 aa21.41■■□□□ 1.02
VPS29-207ENST00000549970 NFKBIEO00221 500 aa21.41■■□□□ 1.02
VPS29-207ENST00000549970 SRGNP10124 158 aa21.41■■□□□ 1.02
VPS29-207ENST00000549970 EIF2S2P20042 333 aaKnown RBP21.41■■□□□ 1.02
VPS29-207ENST00000549970 LMNB1P20700 586 aa21.41■■□□□ 1.02
VPS29-207ENST00000549970 PRELPP51888 382 aa21.41■■□□□ 1.02
VPS29-207ENST00000549970 CNKSR1Q969H4 720 aa21.41■■□□□ 1.02
VPS29-207ENST00000549970 MASTLQ96GX5 879 aa21.41■■□□□ 1.02
VPS29-207ENST00000549970 NUP98P52948 1817 aa21.41■■□□□ 1.02
VPS29-207ENST00000549970 ERVV-1B6SEH8 477 aa21.4■■□□□ 1.02
VPS29-207ENST00000549970 STYK1Q6J9G0 422 aa21.4■■□□□ 1.02
VPS29-207ENST00000549970 ZBTB3Q9H5J0 574 aa21.4■■□□□ 1.02
VPS29-207ENST00000549970 TRIM35Q9UPQ4 493 aa21.4■■□□□ 1.02
VPS29-207ENST00000549970 CCDC88AQ3V6T2 1871 aa21.4■■□□□ 1.02
VPS29-207ENST00000549970 SLX4Q8IY92 1834 aa21.39■■□□□ 1.02
VPS29-207ENST00000549970 ERBB4Q15303 1308 aa21.39■■□□□ 1.01
VPS29-207ENST00000549970 KDM2BQ8NHM5 1336 aa21.39■■□□□ 1.01
VPS29-207ENST00000549970 GTF2E1P29083 439 aaPredicted RBP21.39■■□□□ 1.01
VPS29-207ENST00000549970 LAS1LQ9Y4W2 734 aaKnown RBP21.39■■□□□ 1.01
VPS29-207ENST00000549970 PRPF40BQ6NWY9 871 aaKnown RBP21.38■■□□□ 1.01
VPS29-207ENST00000549970 ZEB1P37275 1124 aaPredicted RBP21.37■■□□□ 1.01
VPS29-207ENST00000549970 NECTIN2Q92692 538 aa21.37■■□□□ 1.01
VPS29-207ENST00000549970 FER1L6Q2WGJ9 1857 aa21.37■■□□□ 1.01
VPS29-207ENST00000549970 ARFGEF2Q9Y6D5 1785 aa21.36■■□□□ 1.01
VPS29-207ENST00000549970 ZC3H4Q9UPT8 1303 aaKnown RBP21.36■■□□□ 1.01
VPS29-207ENST00000549970 TIAM2Q8IVF5 1701 aa21.36■■□□□ 1.01
VPS29-207ENST00000549970 TOMM70O94826 608 aa21.36■■□□□ 1.01
VPS29-207ENST00000549970 ANXA1P04083 346 aa21.36■■□□□ 1.01
VPS29-207ENST00000549970 HSPA6P17066 643 aa21.36■■□□□ 1.01
VPS29-207ENST00000549970 GPTP24298 496 aa21.36■■□□□ 1.01
VPS29-207ENST00000549970 PROSER3Q2NL68 480 aa21.36■■□□□ 1.01
VPS29-207ENST00000549970 NUTM1Q86Y26 1132 aa21.36■■□□□ 1.01
VPS29-207ENST00000549970 CHL1O00533 1208 aa21.35■■□□□ 1.01
VPS29-207ENST00000549970 NPR1P16066 1061 aa21.35■■□□□ 1.01
VPS29-207ENST00000549970 PDIA6Q15084 440 aa21.35■■□□□ 1.01
VPS29-207ENST00000549970 KRT24Q2M2I5 525 aa21.35■■□□□ 1.01
VPS29-207ENST00000549970 NYXQ9GZU5 481 aa21.35■■□□□ 1.01
VPS29-207ENST00000549970 ABCC12Q96J65 1359 aa21.35■■□□□ 1.01
VPS29-207ENST00000549970 UBN2Q6ZU65 1347 aa21.34■■□□□ 1.01
VPS29-207ENST00000549970 KLRG2A4D1S0 409 aaPredicted RBP21.34■■□□□ 1.01
VPS29-207ENST00000549970 LRP10Q7Z4F1 713 aa21.34■■□□□ 1.01
VPS29-207ENST00000549970 C16orf71Q8IYS4 520 aaPredicted RBP21.34■■□□□ 1.01
VPS29-207ENST00000549970 TAOK3Q9H2K8 898 aa21.34■■□□□ 1.01
VPS29-207ENST00000549970 RRAGCQ9HB90 399 aa21.34■■□□□ 1.01
VPS29-207ENST00000549970 TNRC6CQ9HCJ0 1690 aaKnown RBP21.34■■□□□ 1.01
VPS29-207ENST00000549970 ERFEQ4G0M1 354 aa21.33■■□□□ 1.01
VPS29-207ENST00000549970 SOGA3Q5TF21 947 aa21.33■■□□□ 1.01
VPS29-207ENST00000549970 GIGYF2Q6Y7W6 1299 aaKnown RBP21.33■■□□□ 1.01
VPS29-207ENST00000549970 GLTPD2A6NH11 291 aa21.31■■□□□ 1
VPS29-207ENST00000549970 SUSD4Q5VX71 490 aa21.31■■□□□ 1
VPS29-207ENST00000549970 ZNF34Q8IZ26 560 aa21.31■■□□□ 1
VPS29-207ENST00000549970 IBTKQ9P2D0 1353 aaPredicted RBP21.31■■□□□ 1
VPS29-207ENST00000549970 LTBP3Q9NS15 1303 aa21.3■■□□□ 1
VPS29-207ENST00000549970 DICER1Q9UPY3 1922 aaKnown RBP21.3■■□□□ 1
VPS29-207ENST00000549970 APAF1O14727 1248 aa21.3■■□□□ 1
VPS29-207ENST00000549970 AIMP1Q12904 312 aaKnown RBP21.3■■□□□ 1
VPS29-207ENST00000549970 COPS6Q7L5N1 327 aa21.3■■□□□ 1
VPS29-207ENST00000549970 CCDC93Q567U6 631 aa21.29■■□□□ 1
VPS29-207ENST00000549970 RBM46Q8TBY0 533 aaKnown RBP21.29■■□□□ 1
VPS29-207ENST00000549970 XAGE3Q8WTP9 111 aa21.29■■□□□ 1
VPS29-207ENST00000549970 C7orf43Q8WVR3 580 aa21.29■■□□□ 1
VPS29-207ENST00000549970 CFAP44Q96MT7 982 aa21.29■■□□□ 1
VPS29-207ENST00000549970 NTSR2O95665 410 aa21.28■■□□□ 1
VPS29-207ENST00000549970 ALDH1B1P30837 517 aa21.28■■□□□ 1
VPS29-207ENST00000549970 HDGFL1Q5TGJ6 251 aa21.28■■□□□ 1
VPS29-207ENST00000549970 OLFM4Q6UX06 510 aa21.28■■□□□ 1
VPS29-207ENST00000549970 DDX21Q9NR30 783 aaKnown RBP eCLIP21.28■■□□□ 1
VPS29-207ENST00000549970 CRY2Q49AN0 593 aa21.27■■□□□ 1
VPS29-207ENST00000549970 PARP10Q53GL7 1025 aa21.27■■□□□ 1
VPS29-207ENST00000549970 PPP1R42Q7Z4L9 355 aa21.27■■□□□ 1
VPS29-207ENST00000549970 MBIPQ9NS73 344 aa21.27■■□□□ 1
VPS29-207ENST00000549970 CHPF2Q9P2E5 772 aa21.27■■□□□ 1
VPS29-207ENST00000549970 CCDC184Q52MB2 194 aa21.26■□□□□ 0.99
VPS29-207ENST00000549970 DPY19L2Q6NUT2 758 aa21.26■□□□□ 0.99
VPS29-207ENST00000549970 RPGRQ92834 1020 aaKnown RBP21.26■□□□□ 0.99
VPS29-207ENST00000549970 HOXB7P09629 217 aa21.25■□□□□ 0.99
Retrieved 100 of 20,778 RNA–protein pairs in 33 ms