RNA–Protein interactions for RNA: ENST00000545707.5

LDLR-204, Transcript of low density lipoprotein receptor, humanhuman

TSL 2 BASIC

Gene LDLR, Length 2,429 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-204ENST00000545707 ZKSCAN5Q9Y2L8 839 aa19.02■□□□□ 0.64
LDLR-204ENST00000545707 CACNA1FO60840 1977 aa19.02■□□□□ 0.64
LDLR-204ENST00000545707 HOXB7P09629 217 aa19.02■□□□□ 0.63
LDLR-204ENST00000545707 HSP90AB4PQ58FF6 505 aa19.02■□□□□ 0.63
LDLR-204ENST00000545707 SYAP1Q96A49 352 aaPredicted RBP19.02■□□□□ 0.63
LDLR-204ENST00000545707 SMC3Q9UQE7 1217 aa19.02■□□□□ 0.63
LDLR-204ENST00000545707 RNMTO43148 476 aaKnown RBP19.01■□□□□ 0.63
LDLR-204ENST00000545707 FIBPO43427 364 aa19.01■□□□□ 0.63
LDLR-204ENST00000545707 EPB41L2O43491 1005 aaKnown RBP19.01■□□□□ 0.63
LDLR-204ENST00000545707 IFIT2P09913 472 aaKnown RBP19.01■□□□□ 0.63
LDLR-204ENST00000545707 ECHDC1Q9NTX5 307 aa19.01■□□□□ 0.63
LDLR-204ENST00000545707 HYPKQ9NX55 129 aa19.01■□□□□ 0.63
LDLR-204ENST00000545707 GIGYF1O75420 1035 aaPredicted RBP19.01■□□□□ 0.63
LDLR-204ENST00000545707 PLEKHO1Q53GL0 409 aaPredicted RBP19.01■□□□□ 0.63
LDLR-204ENST00000545707 AACSQ86V21 672 aa19.01■□□□□ 0.63
LDLR-204ENST00000545707 ZNF500O60304 480 aaPredicted RBP19■□□□□ 0.63
LDLR-204ENST00000545707 TPM2P07951 284 aa19■□□□□ 0.63
LDLR-204ENST00000545707 PDZRN4Q6ZMN7 1036 aaPredicted RBP19■□□□□ 0.63
LDLR-204ENST00000545707 CCDC8Q9H0W5 538 aaPredicted RBP19■□□□□ 0.63
LDLR-204ENST00000545707 TTC41PQ6P2S7 1318 aa19■□□□□ 0.63
LDLR-204ENST00000545707 FAM227BQ96M60 508 aa19■□□□□ 0.63
LDLR-204ENST00000545707 PTMAP06454 111 aaKnown RBP18.99■□□□□ 0.63
LDLR-204ENST00000545707 GJB2P29033 226 aa18.99■□□□□ 0.63
LDLR-204ENST00000545707 C1orf141Q5JVX7 400 aa18.99■□□□□ 0.63
LDLR-204ENST00000545707 NECAB1Q8N987 351 aa18.99■□□□□ 0.63
LDLR-204ENST00000545707 SUCLG2Q96I99 432 aa18.99■□□□□ 0.63
LDLR-204ENST00000545707 SIL1Q9H173 461 aa18.99■□□□□ 0.63
LDLR-204ENST00000545707 PDRG1Q9NUG6 133 aa18.99■□□□□ 0.63
LDLR-204ENST00000545707 ZSCAN21Q9Y5A6 473 aaPredicted RBP18.99■□□□□ 0.63
LDLR-204ENST00000545707 TCHHQ07283 1943 aa18.99■□□□□ 0.63
LDLR-204ENST00000545707 KSR2Q6VAB6 950 aa18.99■□□□□ 0.63
LDLR-204ENST00000545707 KLHDC4Q8TBB5 520 aa18.99■□□□□ 0.63
LDLR-204ENST00000545707 CCDC39Q9UFE4 941 aa18.99■□□□□ 0.63
LDLR-204ENST00000545707 PXDNQ92626 1479 aa18.98■□□□□ 0.63
LDLR-204ENST00000545707 USP42Q9H9J4 1324 aaKnown RBP18.98■□□□□ 0.63
LDLR-204ENST00000545707 RRP9O43818 475 aaKnown RBP18.98■□□□□ 0.63
LDLR-204ENST00000545707 F13A1P00488 732 aa18.98■□□□□ 0.63
LDLR-204ENST00000545707 MTX1Q13505 466 aa18.98■□□□□ 0.63
LDLR-204ENST00000545707 KAZALD1Q96I82 304 aa18.98■□□□□ 0.63
LDLR-204ENST00000545707 ORAI2Q96SN7 254 aa18.98■□□□□ 0.63
LDLR-204ENST00000545707 TLR7Q9NYK1 1049 aaKnown RBP18.98■□□□□ 0.63
LDLR-204ENST00000545707 LTN1O94822 1766 aa18.98■□□□□ 0.63
LDLR-204ENST00000545707 SASH1O94885 1247 aa18.98■□□□□ 0.63
LDLR-204ENST00000545707 RBM10P98175 930 aaKnown RBP18.98■□□□□ 0.63
LDLR-204ENST00000545707 EAF2Q96CJ1 260 aaPredicted RBP18.98■□□□□ 0.63
LDLR-204ENST00000545707 ZNF830Q96NB3 372 aaPredicted RBP18.98■□□□□ 0.63
LDLR-204ENST00000545707 N4BP2Q86UW6 1770 aaPredicted RBP18.97■□□□□ 0.63
LDLR-204ENST00000545707 GCP02774 474 aa18.97■□□□□ 0.63
LDLR-204ENST00000545707 DNM1Q05193 864 aaKnown RBP18.97■□□□□ 0.63
LDLR-204ENST00000545707 RUFY2Q8WXA3 655 aa18.97■□□□□ 0.63
LDLR-204ENST00000545707 TCEANC2Q96MN5 208 aa18.97■□□□□ 0.63
LDLR-204ENST00000545707 BICC1Q9H694 974 aaKnown RBP18.97■□□□□ 0.63
LDLR-204ENST00000545707 USP25Q9UHP3 1055 aa18.97■□□□□ 0.63
LDLR-204ENST00000545707 MED1Q15648 1581 aaPredicted RBP18.97■□□□□ 0.63
LDLR-204ENST00000545707 HCLS1P14317 486 aaPredicted RBP18.96■□□□□ 0.63
LDLR-204ENST00000545707 ST3GAL1Q11201 340 aa18.96■□□□□ 0.63
LDLR-204ENST00000545707 KCNH5Q8NCM2 988 aa18.96■□□□□ 0.63
LDLR-204ENST00000545707 AXIN2Q9Y2T1 843 aa18.96■□□□□ 0.63
LDLR-204ENST00000545707 NFAT5O94916 1531 aa18.96■□□□□ 0.63
LDLR-204ENST00000545707 PHF14O94880 888 aa18.96■□□□□ 0.63
LDLR-204ENST00000545707 KCNJ4P48050 445 aa18.96■□□□□ 0.63
LDLR-204ENST00000545707 RGPD2P0DJD1 1756 aa18.96■□□□□ 0.62
LDLR-204ENST00000545707 VPS37CA5D8V6 355 aaPredicted RBP18.95■□□□□ 0.62
LDLR-204ENST00000545707 ALDH1L1O75891 902 aa18.95■□□□□ 0.62
LDLR-204ENST00000545707 NMIQ13287 307 aaPredicted RBP18.95■□□□□ 0.62
LDLR-204ENST00000545707 SLC39A6Q13433 755 aa18.95■□□□□ 0.62
LDLR-204ENST00000545707 ME3Q16798 604 aa18.95■□□□□ 0.62
LDLR-204ENST00000545707 CCDC183Q5T5S1 534 aa18.95■□□□□ 0.62
LDLR-204ENST00000545707 TMEM87AQ8NBN3 555 aa18.95■□□□□ 0.62
LDLR-204ENST00000545707 ANKRD24Q8TF21 1146 aa18.95■□□□□ 0.62
LDLR-204ENST00000545707 BOLA2Q9H3K6 86 aa18.95■□□□□ 0.62
LDLR-204ENST00000545707 CYP46A1Q9Y6A2 500 aa18.95■□□□□ 0.62
LDLR-204ENST00000545707 NECTIN1Q15223 517 aa18.95■□□□□ 0.62
LDLR-204ENST00000545707 JARID2Q92833 1246 aaPredicted RBP18.95■□□□□ 0.62
LDLR-204ENST00000545707 ZSWIM6Q9HCJ5 1215 aa18.95■□□□□ 0.62
LDLR-204ENST00000545707 MTMR6Q9Y217 621 aa18.95■□□□□ 0.62
LDLR-204ENST00000545707 RBM8AQ9Y5S9 174 aaKnown RBP18.95■□□□□ 0.62
LDLR-204ENST00000545707 TAF6LQ9Y6J9 622 aa18.95■□□□□ 0.62
LDLR-204ENST00000545707 IGF2BP2Q9Y6M1 599 aaKnown RBP eCLIP18.95■□□□□ 0.62
LDLR-204ENST00000545707 GIMAP6Q6P9H5 292 aa18.94■□□□□ 0.62
LDLR-204ENST00000545707 GPATCH3Q96I76 525 aa18.94■□□□□ 0.62
LDLR-204ENST00000545707 GRM8O00222 908 aa18.94■□□□□ 0.62
LDLR-204ENST00000545707 UBE2HP62256 183 aa18.94■□□□□ 0.62
LDLR-204ENST00000545707 AMOTQ4VCS5 1084 aa18.94■□□□□ 0.62
LDLR-204ENST00000545707 VPS53Q5VIR6 699 aa18.94■□□□□ 0.62
LDLR-204ENST00000545707 EVI5LQ96CN4 794 aa18.94■□□□□ 0.62
LDLR-204ENST00000545707 CCDC171Q6TFL3 1326 aa18.94■□□□□ 0.62
LDLR-204ENST00000545707 MYL6BP14649 208 aa18.93■□□□□ 0.62
LDLR-204ENST00000545707 G3BP1Q13283 466 aaKnown RBP eCLIP18.93■□□□□ 0.62
LDLR-204ENST00000545707 CREB3L3Q68CJ9 461 aa18.93■□□□□ 0.62
LDLR-204ENST00000545707 ARHGEF25Q86VW2 580 aa18.93■□□□□ 0.62
LDLR-204ENST00000545707 CHMP4AQ9BY43 222 aa18.93■□□□□ 0.62
LDLR-204ENST00000545707 TPCN1Q9ULQ1 816 aa18.93■□□□□ 0.62
LDLR-204ENST00000545707 FAM173BQ6P4H8 233 aa18.93■□□□□ 0.62
LDLR-204ENST00000545707 FERMT3Q86UX7 667 aa18.93■□□□□ 0.62
LDLR-204ENST00000545707 EDC3Q96F86 508 aaKnown RBP18.93■□□□□ 0.62
LDLR-204ENST00000545707 KDM3BQ7LBC6 1761 aa18.92■□□□□ 0.62
LDLR-204ENST00000545707 A0A0D9SFI3 127 aa18.92■□□□□ 0.62
LDLR-204ENST00000545707 PIP4K2AP48426 406 aaPredicted RBP18.92■□□□□ 0.62
LDLR-204ENST00000545707 PLCB2Q00722 1185 aa18.92■□□□□ 0.62
Retrieved 100 of 20,778 RNA–protein pairs in 18.2 ms