RNA–Protein interactions for RNA: ENST00000543205.1

CLIP1-217, Transcript of CAP-Gly domain containing linker protein 1, humanhuman

TSL 2

Gene CLIP1, Length 2,018 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP1-217ENST00000543205 SHPRHQ149N8 1683 aa6.92□□□□□ -1.3
CLIP1-217ENST00000543205 AKAP12Q02952 1782 aa6.92□□□□□ -1.3
CLIP1-217ENST00000543205 ADAMTS2O95450 1211 aa6.91□□□□□ -1.3
CLIP1-217ENST00000543205 CSPP1Q1MSJ5 1256 aa6.91□□□□□ -1.3
CLIP1-217ENST00000543205 GRIPAP1Q4V328 841 aa6.91□□□□□ -1.3
CLIP1-217ENST00000543205 RSBN1LQ6PCB5 846 aaPredicted RBP6.91□□□□□ -1.3
CLIP1-217ENST00000543205 PROCA1Q8NCQ7 364 aaPredicted RBP6.91□□□□□ -1.3
CLIP1-217ENST00000543205 CARD14Q9BXL6 1004 aa6.91□□□□□ -1.3
CLIP1-217ENST00000543205 LIMD1Q9UGP4 676 aa6.91□□□□□ -1.3
CLIP1-217ENST00000543205 KNSTRNQ9Y448 316 aa6.91□□□□□ -1.3
CLIP1-217ENST00000543205 COG3Q96JB2 828 aa6.91□□□□□ -1.3
CLIP1-217ENST00000543205 WBP1LQ9NX94 342 aa6.91□□□□□ -1.3
CLIP1-217ENST00000543205 CGNL1Q0VF96 1302 aa6.91□□□□□ -1.3
CLIP1-217ENST00000543205 NSD3Q9BZ95 1437 aa6.91□□□□□ -1.3
CLIP1-217ENST00000543205 MYOM1P52179 1685 aa6.91□□□□□ -1.3
CLIP1-217ENST00000543205 MON2Q7Z3U7 1717 aa6.9□□□□□ -1.3
CLIP1-217ENST00000543205 SPTLC1O15269 473 aa6.9□□□□□ -1.3
CLIP1-217ENST00000543205 ACTN4O43707 911 aaKnown RBP6.9□□□□□ -1.3
CLIP1-217ENST00000543205 GUCA2AQ02747 115 aa6.9□□□□□ -1.3
CLIP1-217ENST00000543205 KCNH5Q8NCM2 988 aa6.9□□□□□ -1.3
CLIP1-217ENST00000543205 HLA-CQ95604 372 aa6.9□□□□□ -1.3
CLIP1-217ENST00000543205 ALS2Q96Q42 1657 aa6.9□□□□□ -1.31
CLIP1-217ENST00000543205 COL22A1Q8NFW1 1626 aaPredicted RBP6.9□□□□□ -1.31
CLIP1-217ENST00000543205 USP31Q70CQ4 1352 aa6.9□□□□□ -1.31
CLIP1-217ENST00000543205 USP19O94966 1318 aa6.89□□□□□ -1.31
CLIP1-217ENST00000543205 FYB1O15117 783 aa6.89□□□□□ -1.31
CLIP1-217ENST00000543205 GCP02774 474 aa6.89□□□□□ -1.31
CLIP1-217ENST00000543205 FDX1P10109 184 aa6.89□□□□□ -1.31
CLIP1-217ENST00000543205 ATP6V1AP38606 617 aa6.89□□□□□ -1.31
CLIP1-217ENST00000543205 APLP1P51693 650 aa6.89□□□□□ -1.31
CLIP1-217ENST00000543205 NGLY1Q96IV0 654 aa6.89□□□□□ -1.31
CLIP1-217ENST00000543205 C8orf37Q96NL8 207 aa6.89□□□□□ -1.31
CLIP1-217ENST00000543205 GGNBP2Q9H3C7 697 aa6.89□□□□□ -1.31
CLIP1-217ENST00000543205 GFRA3O60609 400 aa6.89□□□□□ -1.31
CLIP1-217ENST00000543205 ZC3H6P61129 1189 aaKnown RBP6.89□□□□□ -1.31
CLIP1-217ENST00000543205 PUS10Q3MIT2 529 aaKnown RBP6.89□□□□□ -1.31
CLIP1-217ENST00000543205 ZNF772Q68DY9 489 aaPredicted RBP6.89□□□□□ -1.31
CLIP1-217ENST00000543205 LRP6O75581 1613 aa6.89□□□□□ -1.31
CLIP1-217ENST00000543205 NRKQ7Z2Y5 1582 aa6.89□□□□□ -1.31
CLIP1-217ENST00000543205 LCE2BO14633 110 aa6.88□□□□□ -1.31
CLIP1-217ENST00000543205 PPM1GO15355 546 aaPredicted RBP6.88□□□□□ -1.31
CLIP1-217ENST00000543205 GNL3Q9BVP2 549 aaKnown RBP eCLIP6.88□□□□□ -1.31
CLIP1-217ENST00000543205 PRDM11Q9NQV5 511 aa6.88□□□□□ -1.31
CLIP1-217ENST00000543205 IGSF5Q9NSI5 407 aa6.88□□□□□ -1.31
CLIP1-217ENST00000543205 PIK3C2AO00443 1686 aa6.88□□□□□ -1.31
CLIP1-217ENST00000543205 NRG2O14511 850 aaPredicted RBP6.88□□□□□ -1.31
CLIP1-217ENST00000543205 GJA5P36382 358 aa6.88□□□□□ -1.31
CLIP1-217ENST00000543205 DDX10Q13206 875 aaKnown RBP6.88□□□□□ -1.31
CLIP1-217ENST00000543205 ZNF787Q6DD87 383 aa6.88□□□□□ -1.31
CLIP1-217ENST00000543205 PCDHB3Q9Y5E6 796 aa6.88□□□□□ -1.31
CLIP1-217ENST00000543205 FAM83GA6ND36 823 aa6.87□□□□□ -1.31
CLIP1-217ENST00000543205 PER1O15534 1290 aaPredicted RBP6.87□□□□□ -1.31
CLIP1-217ENST00000543205 PCDHB15Q9Y5E8 787 aa6.87□□□□□ -1.31
CLIP1-217ENST00000543205 NSD2O96028 1365 aa6.87□□□□□ -1.31
CLIP1-217ENST00000543205 KIAA0232Q92628 1395 aa6.87□□□□□ -1.31
CLIP1-217ENST00000543205 AFF2P51816 1311 aa6.86□□□□□ -1.31
CLIP1-217ENST00000543205 RXRBP28702 533 aa6.86□□□□□ -1.31
CLIP1-217ENST00000543205 CNGB1Q14028 1251 aaPredicted RBP6.86□□□□□ -1.31
CLIP1-217ENST00000543205 CHRNA2Q15822 529 aa6.86□□□□□ -1.31
CLIP1-217ENST00000543205 TUSC1Q2TAM9 212 aa6.86□□□□□ -1.31
CLIP1-217ENST00000543205 NYAP1Q6ZVC0 841 aa6.86□□□□□ -1.31
CLIP1-217ENST00000543205 MORC1Q86VD1 984 aa6.86□□□□□ -1.31
CLIP1-217ENST00000543205 CCDC125Q86Z20 511 aa6.86□□□□□ -1.31
CLIP1-217ENST00000543205 CWC22Q9HCG8 908 aaKnown RBP6.86□□□□□ -1.31
CLIP1-217ENST00000543205 OVOS2A0A0J9YW53 1432 aa6.86□□□□□ -1.31
CLIP1-217ENST00000543205 OVOS2Q6IE36 1432 aa6.86□□□□□ -1.31
CLIP1-217ENST00000543205 CPDO75976 1380 aa6.86□□□□□ -1.31
CLIP1-217ENST00000543205 SLIT3O75094 1523 aa6.86□□□□□ -1.31
CLIP1-217ENST00000543205 CARNS1A5YM72 827 aa6.86□□□□□ -1.31
CLIP1-217ENST00000543205 TNNT2P45379 298 aaPredicted RBP6.86□□□□□ -1.31
CLIP1-217ENST00000543205 MORN1Q5T089 497 aa6.86□□□□□ -1.31
CLIP1-217ENST00000543205 CC2D1BQ5T0F9 858 aaKnown RBP6.86□□□□□ -1.31
CLIP1-217ENST00000543205 UBE2Q2Q8WVN8 375 aa6.86□□□□□ -1.31
CLIP1-217ENST00000543205 USP21Q9UK80 565 aa6.86□□□□□ -1.31
CLIP1-217ENST00000543205 PCDHGC3Q9UN70 934 aa6.86□□□□□ -1.31
CLIP1-217ENST00000543205 PHRF1Q9P1Y6 1649 aaKnown RBP6.85□□□□□ -1.31
CLIP1-217ENST00000543205 AMPHP49418 695 aa6.85□□□□□ -1.31
CLIP1-217ENST00000543205 EVA1CP58658 441 aa6.85□□□□□ -1.31
CLIP1-217ENST00000543205 QPCTQ16769 361 aa6.85□□□□□ -1.31
CLIP1-217ENST00000543205 CCDC27Q2M243 656 aa6.85□□□□□ -1.31
CLIP1-217ENST00000543205 ARHGEF25Q86VW2 580 aa6.85□□□□□ -1.31
CLIP1-217ENST00000543205 ZBTB3Q9H5J0 574 aa6.85□□□□□ -1.31
CLIP1-217ENST00000543205 BTG4Q9NY30 223 aa6.85□□□□□ -1.31
CLIP1-217ENST00000543205 ABCA3Q99758 1704 aa6.85□□□□□ -1.31
CLIP1-217ENST00000543205 KIF20BQ96Q89 1820 aa6.84□□□□□ -1.31
CLIP1-217ENST00000543205 C6orf229H3BNL8 230 aa6.84□□□□□ -1.31
CLIP1-217ENST00000543205 FBLN1P23142 703 aa6.84□□□□□ -1.31
CLIP1-217ENST00000543205 RRS1Q15050 365 aaKnown RBP6.84□□□□□ -1.31
CLIP1-217ENST00000543205 BLOC1S3Q6QNY0 202 aa6.84□□□□□ -1.31
CLIP1-217ENST00000543205 UNC5CLQ8IV45 518 aa6.84□□□□□ -1.31
CLIP1-217ENST00000543205 SLC27A5Q9Y2P5 690 aa6.84□□□□□ -1.31
CLIP1-217ENST00000543205 CRYBG1Q9Y4K1 1723 aa6.84□□□□□ -1.31
CLIP1-217ENST00000543205 USP54Q70EL1 1684 aa6.84□□□□□ -1.31
CLIP1-217ENST00000543205 NFAT5O94916 1531 aa6.84□□□□□ -1.31
CLIP1-217ENST00000543205 PRPF38BQ5VTL8 546 aaKnown RBP6.84□□□□□ -1.31
CLIP1-217ENST00000543205 QTRT2Q9H974 415 aaKnown RBP6.84□□□□□ -1.31
CLIP1-217ENST00000543205 STRN4Q9NRL3 753 aa6.84□□□□□ -1.31
CLIP1-217ENST00000543205 AATKQ6ZMQ8 1374 aa6.84□□□□□ -1.31
CLIP1-217ENST00000543205 NPC1L1Q9UHC9 1359 aa6.84□□□□□ -1.31
CLIP1-217ENST00000543205 MAP3K19Q56UN5 1328 aa6.83□□□□□ -1.32
Retrieved 100 of 20,778 RNA–protein pairs in 12.2 ms