RNA–Protein interactions for RNA: ENST00000543123.1

RTN3-212, Transcript of reticulon 3, humanhuman

TSL 2

Gene RTN3, Length 712 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RTN3-212ENST00000543123 COL11A2P13942 1736 aaPredicted RBP17.3■□□□□ 0.36
RTN3-212ENST00000543123 LMOD3Q0VAK6 560 aa17.29■□□□□ 0.36
RTN3-212ENST00000543123 STYK1Q6J9G0 422 aa17.29■□□□□ 0.36
RTN3-212ENST00000543123 RBM46Q8TBY0 533 aaKnown RBP17.29■□□□□ 0.36
RTN3-212ENST00000543123 MIS18AQ9NYP9 233 aa17.29■□□□□ 0.36
RTN3-212ENST00000543123 NBPF26B4DH59 902 aa17.28■□□□□ 0.36
RTN3-212ENST00000543123 APLP1P51693 650 aa17.28■□□□□ 0.36
RTN3-212ENST00000543123 NBPF10Q6P3W6 841 aaKnown RBP17.28■□□□□ 0.36
RTN3-212ENST00000543123 TPTE2Q6XPS3 522 aa17.28■□□□□ 0.36
RTN3-212ENST00000543123 NBPF15Q8N660 670 aa17.28■□□□□ 0.36
RTN3-212ENST00000543123 MASTLQ96GX5 879 aa17.28■□□□□ 0.36
RTN3-212ENST00000543123 NIP7Q9Y221 180 aaKnown RBP eCLIP17.28■□□□□ 0.36
RTN3-212ENST00000543123 MYBBP1AQ9BQG0 1328 aaKnown RBP17.27■□□□□ 0.36
RTN3-212ENST00000543123 SRGNP10124 158 aa17.27■□□□□ 0.36
RTN3-212ENST00000543123 EIF4A1P60842 406 aaKnown RBP17.27■□□□□ 0.36
RTN3-212ENST00000543123 CCDC24Q8N4L8 307 aa17.27■□□□□ 0.36
RTN3-212ENST00000543123 TIAM2Q8IVF5 1701 aa17.27■□□□□ 0.35
RTN3-212ENST00000543123 NFKBIEO00221 500 aa17.26■□□□□ 0.35
RTN3-212ENST00000543123 C21orf2O43822 256 aa17.26■□□□□ 0.35
RTN3-212ENST00000543123 FSTL1Q12841 308 aa17.26■□□□□ 0.35
RTN3-212ENST00000543123 KIF6Q6ZMV9 814 aa17.26■□□□□ 0.35
RTN3-212ENST00000543123 ERBB4Q15303 1308 aa17.25■□□□□ 0.35
RTN3-212ENST00000543123 LTBP3Q9NS15 1303 aa17.25■□□□□ 0.35
RTN3-212ENST00000543123 ERVV-1B6SEH8 477 aa17.25■□□□□ 0.35
RTN3-212ENST00000543123 DDX10Q13206 875 aaKnown RBP17.25■□□□□ 0.35
RTN3-212ENST00000543123 PRPF40BQ6NWY9 871 aaKnown RBP17.25■□□□□ 0.35
RTN3-212ENST00000543123 THUMPD2Q9BTF0 503 aaKnown RBP17.25■□□□□ 0.35
RTN3-212ENST00000543123 NYXQ9GZU5 481 aa17.25■□□□□ 0.35
RTN3-212ENST00000543123 BABAM1Q9NWV8 329 aa17.25■□□□□ 0.35
RTN3-212ENST00000543123 TSPYL4Q9UJ04 414 aa17.25■□□□□ 0.35
RTN3-212ENST00000543123 ARFGEF2Q9Y6D5 1785 aa17.25■□□□□ 0.35
RTN3-212ENST00000543123 GLTPD2A6NH11 291 aa17.24■□□□□ 0.35
RTN3-212ENST00000543123 NPR1P16066 1061 aa17.24■□□□□ 0.35
RTN3-212ENST00000543123 GTF2E1P29083 439 aaPredicted RBP17.24■□□□□ 0.35
RTN3-212ENST00000543123 RIPK4P57078 832 aa17.24■□□□□ 0.35
RTN3-212ENST00000543123 TAOK3Q9H2K8 898 aa17.24■□□□□ 0.35
RTN3-212ENST00000543123 ZNF219Q9P2Y4 722 aaPredicted RBP17.24■□□□□ 0.35
RTN3-212ENST00000543123 WDR43Q15061 677 aaKnown RBP eCLIP17.23■□□□□ 0.35
RTN3-212ENST00000543123 DPY19L2Q6NUT2 758 aa17.23■□□□□ 0.35
RTN3-212ENST00000543123 RRAGCQ9HB90 399 aa17.23■□□□□ 0.35
RTN3-212ENST00000543123 MAP3K15Q6ZN16 1313 aa17.22■□□□□ 0.35
RTN3-212ENST00000543123 FER1L6Q2WGJ9 1857 aa17.22■□□□□ 0.35
RTN3-212ENST00000543123 VEGFAP15692 232 aaPredicted RBP17.22■□□□□ 0.35
RTN3-212ENST00000543123 ERFEQ4G0M1 354 aa17.22■□□□□ 0.35
RTN3-212ENST00000543123 NGEFQ8N5V2 710 aa17.22■□□□□ 0.35
RTN3-212ENST00000543123 RRP7AQ9Y3A4 280 aaKnown RBP17.22■□□□□ 0.35
RTN3-212ENST00000543123 CACNA1SQ13698 1873 aa17.21■□□□□ 0.35
RTN3-212ENST00000543123 IBTKQ9P2D0 1353 aaPredicted RBP17.21■□□□□ 0.35
RTN3-212ENST00000543123 KLRG2A4D1S0 409 aaPredicted RBP17.21■□□□□ 0.35
RTN3-212ENST00000543123 MYL6BP14649 208 aa17.21■□□□□ 0.35
RTN3-212ENST00000543123 TMPOP42166 694 aaKnown RBP17.21■□□□□ 0.35
RTN3-212ENST00000543123 HLFQ16534 295 aa17.21■□□□□ 0.35
RTN3-212ENST00000543123 CCDC93Q567U6 631 aa17.21■□□□□ 0.35
RTN3-212ENST00000543123 SMC1BQ8NDV3 1235 aa17.21■□□□□ 0.35
RTN3-212ENST00000543123 CCDC88AQ3V6T2 1871 aa17.2■□□□□ 0.34
RTN3-212ENST00000543123 SLX4Q8IY92 1834 aa17.2■□□□□ 0.34
RTN3-212ENST00000543123 FAM177BA6PVY3 158 aa17.2■□□□□ 0.34
RTN3-212ENST00000543123 PRELPP51888 382 aa17.2■□□□□ 0.34
RTN3-212ENST00000543123 DICER1Q9UPY3 1922 aaKnown RBP17.19■□□□□ 0.34
RTN3-212ENST00000543123 ALDH1B1P30837 517 aa17.19■□□□□ 0.34
RTN3-212ENST00000543123 RUNDC1Q96C34 613 aa17.18■□□□□ 0.34
RTN3-212ENST00000543123 ZBTB3Q9H5J0 574 aa17.18■□□□□ 0.34
RTN3-212ENST00000543123 NUP98P52948 1817 aa17.18■□□□□ 0.34
RTN3-212ENST00000543123 RIC1Q4ADV7 1423 aa17.18■□□□□ 0.34
RTN3-212ENST00000543123 TTLL7Q6ZT98 887 aa17.17■□□□□ 0.34
RTN3-212ENST00000543123 RTKN2Q8IZC4 609 aa17.17■□□□□ 0.34
RTN3-212ENST00000543123 WDR90Q96KV7 1748 aa17.17■□□□□ 0.34
RTN3-212ENST00000543123 PARP10Q53GL7 1025 aa17.16■□□□□ 0.34
RTN3-212ENST00000543123 GIGYF2Q6Y7W6 1299 aaKnown RBP17.16■□□□□ 0.34
RTN3-212ENST00000543123 PPP1R42Q7Z4L9 355 aa17.16■□□□□ 0.34
RTN3-212ENST00000543123 C7orf43Q8WVR3 580 aa17.16■□□□□ 0.34
RTN3-212ENST00000543123 RPGRQ92834 1020 aaKnown RBP17.16■□□□□ 0.34
RTN3-212ENST00000543123 EIF2S2P20042 333 aaKnown RBP17.15■□□□□ 0.34
RTN3-212ENST00000543123 GPTP24298 496 aa17.15■□□□□ 0.34
RTN3-212ENST00000543123 FKBP4Q02790 459 aaKnown RBP eCLIP17.15■□□□□ 0.34
RTN3-212ENST00000543123 NEUROD2Q15784 382 aa17.15■□□□□ 0.34
RTN3-212ENST00000543123 CRY2Q49AN0 593 aa17.15■□□□□ 0.34
RTN3-212ENST00000543123 CCDC146Q8IYE0 955 aa17.15■□□□□ 0.34
RTN3-212ENST00000543123 ABCC12Q96J65 1359 aa17.15■□□□□ 0.34
RTN3-212ENST00000543123 CC2D2BQ6DHV5 1058 aa17.14■□□□□ 0.33
RTN3-212ENST00000543123 NUTM1Q86Y26 1132 aa17.14■□□□□ 0.33
RTN3-212ENST00000543123 IQCA1LA6NCM1 817 aa17.13■□□□□ 0.33
RTN3-212ENST00000543123 GRIPAP1Q4V328 841 aa17.13■□□□□ 0.33
RTN3-212ENST00000543123 HSP90AB3PQ58FF7 597 aa17.13■□□□□ 0.33
RTN3-212ENST00000543123 ZNF34Q8IZ26 560 aa17.13■□□□□ 0.33
RTN3-212ENST00000543123 RNF123Q5XPI4 1314 aa17.13■□□□□ 0.33
RTN3-212ENST00000543123 UBN2Q6ZU65 1347 aa17.13■□□□□ 0.33
RTN3-212ENST00000543123 CHL1O00533 1208 aa17.12■□□□□ 0.33
RTN3-212ENST00000543123 RBM17Q96I25 401 aaKnown RBP17.12■□□□□ 0.33
RTN3-212ENST00000543123 PRKRIP1Q9H875 184 aaPredicted RBP17.12■□□□□ 0.33
RTN3-212ENST00000543123 NTSR2O95665 410 aa17.11■□□□□ 0.33
RTN3-212ENST00000543123 HOXB7P09629 217 aa17.11■□□□□ 0.33
RTN3-212ENST00000543123 HOXA10P31260 410 aaPredicted RBP17.11■□□□□ 0.33
RTN3-212ENST00000543123 PDIA6Q15084 440 aa17.11■□□□□ 0.33
RTN3-212ENST00000543123 SUSD4Q5VX71 490 aa17.11■□□□□ 0.33
RTN3-212ENST00000543123 DNAJC5GQ8N7S2 189 aa17.11■□□□□ 0.33
RTN3-212ENST00000543123 TMX4Q9H1E5 349 aaPredicted RBP17.11■□□□□ 0.33
RTN3-212ENST00000543123 ADAMTS8Q9UP79 889 aa17.11■□□□□ 0.33
RTN3-212ENST00000543123 LAS1LQ9Y4W2 734 aaKnown RBP17.11■□□□□ 0.33
RTN3-212ENST00000543123 CALD1Q05682 793 aaKnown RBP17.1■□□□□ 0.33
Retrieved 100 of 20,778 RNA–protein pairs in 32.4 ms