RNA–Protein interactions for RNA: ENST00000542953.1

NPIPB3-211, Transcript of nuclear pore complex interacting protein family member B3, humanhuman

TSL 4

Gene NPIPB3, Length 573 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NPIPB3-211ENST00000542953 SBF1O95248 1867 aa6.94□□□□□ -1.3
NPIPB3-211ENST00000542953 CYP27B1O15528 508 aa6.93□□□□□ -1.3
NPIPB3-211ENST00000542953 GYS1P13807 737 aa6.93□□□□□ -1.3
NPIPB3-211ENST00000542953 LMNB1P20700 586 aa6.93□□□□□ -1.3
NPIPB3-211ENST00000542953 PSEN2P49810 448 aa6.93□□□□□ -1.3
NPIPB3-211ENST00000542953 ITPK1Q13572 414 aa6.93□□□□□ -1.3
NPIPB3-211ENST00000542953 PIGBQ92521 554 aa6.93□□□□□ -1.3
NPIPB3-211ENST00000542953 LTV1Q96GA3 475 aaPredicted RBP6.93□□□□□ -1.3
NPIPB3-211ENST00000542953 RTL1A6NKG5 1358 aa6.93□□□□□ -1.3
NPIPB3-211ENST00000542953 VEGFBP49765 207 aa6.92□□□□□ -1.3
NPIPB3-211ENST00000542953 NKX1-1Q15270 411 aaPredicted RBP6.92□□□□□ -1.3
NPIPB3-211ENST00000542953 NBPF6Q5VWK0 638 aa6.92□□□□□ -1.3
NPIPB3-211ENST00000542953 RAPGEF4Q8WZA2 1011 aa6.92□□□□□ -1.3
NPIPB3-211ENST00000542953 NBPF4Q96M43 638 aa6.92□□□□□ -1.3
NPIPB3-211ENST00000542953 PARP3Q9Y6F1 533 aa6.92□□□□□ -1.3
NPIPB3-211ENST00000542953 PASKQ96RG2 1323 aa6.92□□□□□ -1.3
NPIPB3-211ENST00000542953 KDRP35968 1356 aa6.92□□□□□ -1.3
NPIPB3-211ENST00000542953 RAB3GAP2Q9H2M9 1393 aa6.92□□□□□ -1.3
NPIPB3-211ENST00000542953 TBC1D12O60347 775 aa6.91□□□□□ -1.3
NPIPB3-211ENST00000542953 RASSF7Q02833 373 aa6.91□□□□□ -1.3
NPIPB3-211ENST00000542953 TRAPPC3LQ5T215 181 aa6.91□□□□□ -1.3
NPIPB3-211ENST00000542953 ARHGEF1Q92888 912 aaKnown RBP6.91□□□□□ -1.3
NPIPB3-211ENST00000542953 RTCBQ9Y3I0 505 aaKnown RBP6.91□□□□□ -1.3
NPIPB3-211ENST00000542953 SMG6Q86US8 1419 aaKnown RBP6.91□□□□□ -1.3
NPIPB3-211ENST00000542953 VIRMAQ69YN4 1812 aaKnown RBP6.9□□□□□ -1.3
NPIPB3-211ENST00000542953 CCDC85CA6NKD9 419 aa6.9□□□□□ -1.3
NPIPB3-211ENST00000542953 TATP17735 454 aaPredicted RBP6.9□□□□□ -1.3
NPIPB3-211ENST00000542953 FOXK1P85037 733 aa6.9□□□□□ -1.3
NPIPB3-211ENST00000542953 RC3H1Q5TC82 1133 aaKnown RBP6.9□□□□□ -1.3
NPIPB3-211ENST00000542953 CNTNAP4Q9C0A0 1308 aa6.9□□□□□ -1.3
NPIPB3-211ENST00000542953 ZNF831Q5JPB2 1677 aa6.9□□□□□ -1.31
NPIPB3-211ENST00000542953 RGPD2P0DJD1 1756 aa6.9□□□□□ -1.31
NPIPB3-211ENST00000542953 ITGB4P16144 1822 aa6.9□□□□□ -1.31
NPIPB3-211ENST00000542953 RASSF10A6NK89 507 aa6.89□□□□□ -1.31
NPIPB3-211ENST00000542953 NFKBIEO00221 500 aa6.89□□□□□ -1.31
NPIPB3-211ENST00000542953 CHRNA5P30532 468 aa6.89□□□□□ -1.31
NPIPB3-211ENST00000542953 ATP6V1AP38606 617 aa6.89□□□□□ -1.31
NPIPB3-211ENST00000542953 AMPHP49418 695 aa6.89□□□□□ -1.31
NPIPB3-211ENST00000542953 MAP2K1Q02750 393 aaPredicted RBP6.89□□□□□ -1.31
NPIPB3-211ENST00000542953 DDR1Q08345 913 aa6.89□□□□□ -1.31
NPIPB3-211ENST00000542953 HDGFL2Q7Z4V5 671 aaPredicted RBP6.89□□□□□ -1.31
NPIPB3-211ENST00000542953 USHBP1Q8N6Y0 703 aa6.89□□□□□ -1.31
NPIPB3-211ENST00000542953 ASAP1Q9ULH1 1129 aa6.89□□□□□ -1.31
NPIPB3-211ENST00000542953 A0A1W2PP64 1363 aa6.89□□□□□ -1.31
NPIPB3-211ENST00000542953 NCAPD2Q15021 1401 aa6.89□□□□□ -1.31
NPIPB3-211ENST00000542953 THSD7BQ9C0I4 1608 aa6.89□□□□□ -1.31
NPIPB3-211ENST00000542953 TIAM2Q8IVF5 1701 aa6.89□□□□□ -1.31
NPIPB3-211ENST00000542953 TMEM88BA6NKF7 163 aa6.88□□□□□ -1.31
NPIPB3-211ENST00000542953 RPS6KA4O75676 772 aa6.88□□□□□ -1.31
NPIPB3-211ENST00000542953 RFC4P35249 363 aa6.88□□□□□ -1.31
NPIPB3-211ENST00000542953 SLC4A9Q96Q91 983 aa6.88□□□□□ -1.31
NPIPB3-211ENST00000542953 POLRMTO00411 1230 aaKnown RBP6.87□□□□□ -1.31
NPIPB3-211ENST00000542953 ITGBL1O95965 494 aaPredicted RBP6.87□□□□□ -1.31
NPIPB3-211ENST00000542953 LDHDQ86WU2 507 aa6.87□□□□□ -1.31
NPIPB3-211ENST00000542953 PLPP6Q8IY26 295 aa6.87□□□□□ -1.31
NPIPB3-211ENST00000542953 SLC4A5Q9BY07 1137 aa6.87□□□□□ -1.31
NPIPB3-211ENST00000542953 IRX2Q9BZI1 471 aaPredicted RBP6.87□□□□□ -1.31
NPIPB3-211ENST00000542953 GPHNQ9NQX3 736 aaPredicted RBP6.87□□□□□ -1.31
NPIPB3-211ENST00000542953 ATG3Q9NT62 314 aa6.87□□□□□ -1.31
NPIPB3-211ENST00000542953 TERF2IPQ9NYB0 399 aa6.87□□□□□ -1.31
NPIPB3-211ENST00000542953 TMOD3Q9NYL9 352 aa6.87□□□□□ -1.31
NPIPB3-211ENST00000542953 VPS9D1Q9Y2B5 631 aa6.87□□□□□ -1.31
NPIPB3-211ENST00000542953 INSRP06213 1382 aa6.86□□□□□ -1.31
NPIPB3-211ENST00000542953 KIF24Q5T7B8 1368 aa6.86□□□□□ -1.31
NPIPB3-211ENST00000542953 USP42Q9H9J4 1324 aaKnown RBP6.86□□□□□ -1.31
NPIPB3-211ENST00000542953 PPP1R37O75864 691 aa6.86□□□□□ -1.31
NPIPB3-211ENST00000542953 ECM2O94769 699 aaPredicted RBP6.86□□□□□ -1.31
NPIPB3-211ENST00000542953 TM4SF1P30408 202 aa6.86□□□□□ -1.31
NPIPB3-211ENST00000542953 PRPF38BQ5VTL8 546 aaKnown RBP6.86□□□□□ -1.31
NPIPB3-211ENST00000542953 COG3Q96JB2 828 aa6.86□□□□□ -1.31
NPIPB3-211ENST00000542953 KCNK17Q96T54 332 aa6.86□□□□□ -1.31
NPIPB3-211ENST00000542953 SLC12A5Q9H2X9 1139 aa6.86□□□□□ -1.31
NPIPB3-211ENST00000542953 COL5A3P25940 1745 aaPredicted RBP6.86□□□□□ -1.31
NPIPB3-211ENST00000542953 WDR33Q9C0J8 1336 aaKnown RBP6.85□□□□□ -1.31
NPIPB3-211ENST00000542953 LTBP3Q9NS15 1303 aa6.85□□□□□ -1.31
NPIPB3-211ENST00000542953 IQCA1LA6NCM1 817 aa6.85□□□□□ -1.31
NPIPB3-211ENST00000542953 FBLN1P23142 703 aa6.85□□□□□ -1.31
NPIPB3-211ENST00000542953 PTPN5P54829 565 aa6.85□□□□□ -1.31
NPIPB3-211ENST00000542953 DEFB115Q30KQ5 88 aa6.85□□□□□ -1.31
NPIPB3-211ENST00000542953 TTLL6Q8N841 843 aa6.85□□□□□ -1.31
NPIPB3-211ENST00000542953 PUS7Q96PZ0 661 aaKnown RBP6.85□□□□□ -1.31
NPIPB3-211ENST00000542953 MCOLN1Q9GZU1 580 aa6.85□□□□□ -1.31
NPIPB3-211ENST00000542953 SRP68Q9UHB9 627 aaKnown RBP6.85□□□□□ -1.31
NPIPB3-211ENST00000542953 DLEC1Q9Y238 1755 aa6.85□□□□□ -1.31
NPIPB3-211ENST00000542953 TONSLQ96HA7 1378 aa6.84□□□□□ -1.31
NPIPB3-211ENST00000542953 RRS1Q15050 365 aaKnown RBP6.84□□□□□ -1.31
NPIPB3-211ENST00000542953 ERFEQ4G0M1 354 aa6.84□□□□□ -1.31
NPIPB3-211ENST00000542953 TMC1Q8TDI8 760 aa6.84□□□□□ -1.31
NPIPB3-211ENST00000542953 TAF1DQ9H5J8 278 aaPredicted RBP6.84□□□□□ -1.31
NPIPB3-211ENST00000542953 SPG7Q9UQ90 795 aa6.84□□□□□ -1.31
NPIPB3-211ENST00000542953 ADAMTSL1Q8N6G6 1762 aa6.84□□□□□ -1.31
NPIPB3-211ENST00000542953 LTBP1Q14766 1721 aa6.84□□□□□ -1.31
NPIPB3-211ENST00000542953 NRXN2Q9P2S2 1712 aa6.84□□□□□ -1.31
NPIPB3-211ENST00000542953 ADAMTS7Q9UKP4 1686 aa6.84□□□□□ -1.32
NPIPB3-211ENST00000542953 ROCK2O75116 1388 aaKnown RBP6.83□□□□□ -1.32
NPIPB3-211ENST00000542953 FLT4P35916 1363 aa6.83□□□□□ -1.32
NPIPB3-211ENST00000542953 MYH14Q7Z406 1995 aaKnown RBP6.83□□□□□ -1.32
NPIPB3-211ENST00000542953 DDNO94850 711 aaPredicted RBP6.83□□□□□ -1.32
NPIPB3-211ENST00000542953 HSP90AB2PQ58FF8 381 aa6.83□□□□□ -1.32
NPIPB3-211ENST00000542953 THSD4Q6ZMP0 1018 aa6.83□□□□□ -1.32
Retrieved 100 of 20,778 RNA–protein pairs in 21.2 ms