RNA–Protein interactions for RNA: ENST00000542641.5

YBX3-213, Transcript of Y-box binding protein 3, humanhuman

TSL 4

Gene YBX3, Length 669 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
YBX3-213ENST00000542641 XAGE3Q8WTP9 111 aa14.83□□□□□ -0.04
YBX3-213ENST00000542641 PHAXQ9H814 394 aaKnown RBP14.83□□□□□ -0.04
YBX3-213ENST00000542641 RCAN3Q9UKA8 241 aa14.83□□□□□ -0.04
YBX3-213ENST00000542641 TBC1D2BQ9UPU7 963 aa14.83□□□□□ -0.04
YBX3-213ENST00000542641 MYH14Q7Z406 1995 aaKnown RBP14.83□□□□□ -0.04
YBX3-213ENST00000542641 COL15A1P39059 1388 aa14.83□□□□□ -0.04
YBX3-213ENST00000542641 KIF6Q6ZMV9 814 aa14.82□□□□□ -0.04
YBX3-213ENST00000542641 TTLL7Q6ZT98 887 aa14.82□□□□□ -0.04
YBX3-213ENST00000542641 G2E3Q7L622 706 aa14.82□□□□□ -0.04
YBX3-213ENST00000542641 DZIP3Q86Y13 1208 aaKnown RBP14.82□□□□□ -0.04
YBX3-213ENST00000542641 PNPLA7Q6ZV29 1317 aa14.82□□□□□ -0.04
YBX3-213ENST00000542641 ZPR1O75312 459 aa14.81□□□□□ -0.04
YBX3-213ENST00000542641 BCAR3O75815 825 aa14.81□□□□□ -0.04
YBX3-213ENST00000542641 FLIIQ13045 1269 aa14.81□□□□□ -0.04
YBX3-213ENST00000542641 R3HDM1Q15032 1099 aaKnown RBP14.81□□□□□ -0.04
YBX3-213ENST00000542641 COL23A1Q86Y22 540 aaPredicted RBP14.81□□□□□ -0.04
YBX3-213ENST00000542641 DDX58O95786 925 aaKnown RBP14.8□□□□□ -0.04
YBX3-213ENST00000542641 MKRN4PQ13434 485 aaPredicted RBP14.8□□□□□ -0.04
YBX3-213ENST00000542641 ANKRD13DQ6ZTN6 518 aa14.8□□□□□ -0.04
YBX3-213ENST00000542641 NARFQ9UHQ1 456 aa14.8□□□□□ -0.04
YBX3-213ENST00000542641 BRPF1P55201 1214 aaPredicted RBP14.79□□□□□ -0.04
YBX3-213ENST00000542641 FKBP5Q13451 457 aaPredicted RBP14.79□□□□□ -0.04
YBX3-213ENST00000542641 RIC3Q7Z5B4 369 aa14.79□□□□□ -0.04
YBX3-213ENST00000542641 ZBTB3Q9H5J0 574 aa14.79□□□□□ -0.04
YBX3-213ENST00000542641 SRP68Q9UHB9 627 aaKnown RBP14.79□□□□□ -0.04
YBX3-213ENST00000542641 NOB1Q9ULX3 412 aaKnown RBP14.79□□□□□ -0.04
YBX3-213ENST00000542641 PTPRCP08575 1304 aa14.78□□□□□ -0.04
YBX3-213ENST00000542641 MAP3K15Q6ZN16 1313 aa14.78□□□□□ -0.04
YBX3-213ENST00000542641 KIF16BQ96L93 1317 aa14.78□□□□□ -0.04
YBX3-213ENST00000542641 USP42Q9H9J4 1324 aaKnown RBP14.78□□□□□ -0.04
YBX3-213ENST00000542641 PSDA5PKW4 1024 aaPredicted RBP14.78□□□□□ -0.04
YBX3-213ENST00000542641 ERVV-1B6SEH8 477 aa14.78□□□□□ -0.04
YBX3-213ENST00000542641 USPL1Q5W0Q7 1092 aa14.78□□□□□ -0.04
YBX3-213ENST00000542641 PLBD2Q8NHP8 589 aa14.78□□□□□ -0.04
YBX3-213ENST00000542641 FRAT1Q92837 279 aaPredicted RBP14.78□□□□□ -0.04
YBX3-213ENST00000542641 UBR3Q6ZT12 1888 aa14.78□□□□□ -0.04
YBX3-213ENST00000542641 PI4KAP2A4QPH2 592 aa14.77□□□□□ -0.05
YBX3-213ENST00000542641 IPO8O15397 1037 aaKnown RBP14.77□□□□□ -0.05
YBX3-213ENST00000542641 CAMTA2O94983 1202 aa14.77□□□□□ -0.05
YBX3-213ENST00000542641 KSR2Q6VAB6 950 aa14.77□□□□□ -0.05
YBX3-213ENST00000542641 PI4KAP1Q8N8J0 262 aa14.77□□□□□ -0.05
YBX3-213ENST00000542641 PDGFDQ9GZP0 370 aaPredicted RBP14.77□□□□□ -0.05
YBX3-213ENST00000542641 ZNF652Q9Y2D9 606 aa14.77□□□□□ -0.05
YBX3-213ENST00000542641 HLFQ16534 295 aa14.76□□□□□ -0.05
YBX3-213ENST00000542641 MAP3K2Q9Y2U5 619 aa14.76□□□□□ -0.05
YBX3-213ENST00000542641 CENPBP07199 599 aaPredicted RBP14.75□□□□□ -0.05
YBX3-213ENST00000542641 GYS1P13807 737 aa14.75□□□□□ -0.05
YBX3-213ENST00000542641 CLEC4GQ6UXB4 293 aa14.75□□□□□ -0.05
YBX3-213ENST00000542641 GIGYF2Q6Y7W6 1299 aaKnown RBP14.75□□□□□ -0.05
YBX3-213ENST00000542641 SLC16A10Q8TF71 515 aa14.75□□□□□ -0.05
YBX3-213ENST00000542641 ARHGAP45Q92619 1136 aa14.75□□□□□ -0.05
YBX3-213ENST00000542641 BCL2L12Q9HB09 334 aa14.75□□□□□ -0.05
YBX3-213ENST00000542641 F6X3S4 739 aa14.74□□□□□ -0.05
YBX3-213ENST00000542641 RGL2O15211 777 aa14.74□□□□□ -0.05
YBX3-213ENST00000542641 ZKSCAN2Q63HK3 967 aa14.74□□□□□ -0.05
YBX3-213ENST00000542641 NLGN1Q8N2Q7 840 aa14.74□□□□□ -0.05
YBX3-213ENST00000542641 DNAAF4Q8WXU2 420 aa14.74□□□□□ -0.05
YBX3-213ENST00000542641 API5Q9BZZ5 524 aaKnown RBP14.74□□□□□ -0.05
YBX3-213ENST00000542641 ADCY9O60503 1353 aa14.73□□□□□ -0.05
YBX3-213ENST00000542641 TUBGCP6Q96RT7 1819 aa14.73□□□□□ -0.05
YBX3-213ENST00000542641 TCIRG1Q13488 830 aa14.73□□□□□ -0.05
YBX3-213ENST00000542641 FKBP8Q14318 412 aa14.73□□□□□ -0.05
YBX3-213ENST00000542641 HSP90AB3PQ58FF7 597 aa14.73□□□□□ -0.05
YBX3-213ENST00000542641 SLC4A10Q6U841 1118 aa14.73□□□□□ -0.05
YBX3-213ENST00000542641 ATF7IPQ6VMQ6 1270 aa14.73□□□□□ -0.05
YBX3-213ENST00000542641 GOLGA6L2Q8N9W4 650 aaPredicted RBP14.73□□□□□ -0.05
YBX3-213ENST00000542641 MYD88Q99836 296 aa14.73□□□□□ -0.05
YBX3-213ENST00000542641 METTL22Q9BUU2 404 aaPredicted RBP14.73□□□□□ -0.05
YBX3-213ENST00000542641 CACNA1FO60840 1977 aa14.73□□□□□ -0.05
YBX3-213ENST00000542641 PLIN1O60240 522 aa14.72□□□□□ -0.05
YBX3-213ENST00000542641 ZBTB7AO95365 584 aa14.72□□□□□ -0.05
YBX3-213ENST00000542641 TRIM27P14373 513 aa14.72□□□□□ -0.05
YBX3-213ENST00000542641 NEXNQ0ZGT2 675 aa14.72□□□□□ -0.05
YBX3-213ENST00000542641 TBC1D9BQ66K14 1250 aa14.72□□□□□ -0.05
YBX3-213ENST00000542641 MSL1Q68DK7 614 aa14.72□□□□□ -0.05
YBX3-213ENST00000542641 BICDL1Q6ZP65 573 aa14.72□□□□□ -0.05
YBX3-213ENST00000542641 QSER1Q2KHR3 1735 aa14.72□□□□□ -0.05
YBX3-213ENST00000542641 ATP5J2-PTCD1G3V325 749 aa14.71□□□□□ -0.05
YBX3-213ENST00000542641 GPTP24298 496 aa14.71□□□□□ -0.05
YBX3-213ENST00000542641 CLUAP1Q96AJ1 413 aa14.71□□□□□ -0.05
YBX3-213ENST00000542641 SETDB2Q96T68 719 aa14.71□□□□□ -0.05
YBX3-213ENST00000542641 NIP7Q9Y221 180 aaKnown RBP eCLIP14.71□□□□□ -0.05
YBX3-213ENST00000542641 C4AP0C0L4 1744 aa14.71□□□□□ -0.05
YBX3-213ENST00000542641 NFIXQ14938 502 aa14.7□□□□□ -0.06
YBX3-213ENST00000542641 FTSJ3Q8IY81 847 aaKnown RBP14.7□□□□□ -0.06
YBX3-213ENST00000542641 ZNF34Q8IZ26 560 aa14.7□□□□□ -0.06
YBX3-213ENST00000542641 MTFR1LQ9H019 292 aa14.7□□□□□ -0.06
YBX3-213ENST00000542641 SUPT16HQ9Y5B9 1047 aaKnown RBP14.7□□□□□ -0.06
YBX3-213ENST00000542641 MS4A1P11836 297 aa14.69□□□□□ -0.06
YBX3-213ENST00000542641 TM4SF1P30408 202 aa14.69□□□□□ -0.06
YBX3-213ENST00000542641 RRP1P56182 461 aaKnown RBP14.69□□□□□ -0.06
YBX3-213ENST00000542641 BEND3Q5T5X7 828 aa14.69□□□□□ -0.06
YBX3-213ENST00000542641 DZIP1LQ8IYY4 767 aaKnown RBP14.69□□□□□ -0.06
YBX3-213ENST00000542641 LINS1Q8NG48 757 aa14.69□□□□□ -0.06
YBX3-213ENST00000542641 ISCA1Q9BUE6 129 aa14.69□□□□□ -0.06
YBX3-213ENST00000542641 TNNQ9UQP3 1299 aa14.69□□□□□ -0.06
YBX3-213ENST00000542641 ATP10DQ9P241 1426 aa14.68□□□□□ -0.06
YBX3-213ENST00000542641 IGKV5-2P06315 115 aa14.68□□□□□ -0.06
YBX3-213ENST00000542641 MMP10P09238 476 aa14.68□□□□□ -0.06
YBX3-213ENST00000542641 CCT4P50991 539 aaKnown RBP14.68□□□□□ -0.06
Retrieved 100 of 20,778 RNA–protein pairs in 60.9 ms