RNA–Protein interactions for RNA: ENST00000542460.5

LIG1-204, Transcript of DNA ligase 1, humanhuman

TSL 2

Gene LIG1, Length 1,527 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-204ENST00000542460 PDGFDQ9GZP0 370 aaPredicted RBP21.88■■□□□ 1.09
LIG1-204ENST00000542460 SRP68Q9UHB9 627 aaKnown RBP21.88■■□□□ 1.09
LIG1-204ENST00000542460 QSER1Q2KHR3 1735 aa21.88■■□□□ 1.09
LIG1-204ENST00000542460 MAP3K15Q6ZN16 1313 aa21.87■■□□□ 1.09
LIG1-204ENST00000542460 RGL2O15211 777 aa21.87■■□□□ 1.09
LIG1-204ENST00000542460 CAMTA2O94983 1202 aa21.87■■□□□ 1.09
LIG1-204ENST00000542460 RCAN3Q9UKA8 241 aa21.87■■□□□ 1.09
LIG1-204ENST00000542460 TUBGCP6Q96RT7 1819 aa21.87■■□□□ 1.09
LIG1-204ENST00000542460 PLBD2Q8NHP8 589 aa21.86■■□□□ 1.09
LIG1-204ENST00000542460 ZBTB3Q9H5J0 574 aa21.86■■□□□ 1.09
LIG1-204ENST00000542460 BCAR3O75815 825 aa21.85■■□□□ 1.09
LIG1-204ENST00000542460 GYS1P13807 737 aa21.85■■□□□ 1.09
LIG1-204ENST00000542460 CLEC4GQ6UXB4 293 aa21.85■■□□□ 1.09
LIG1-204ENST00000542460 ZNF652Q9Y2D9 606 aa21.85■■□□□ 1.09
LIG1-204ENST00000542460 FKBP5Q13451 457 aaPredicted RBP21.85■■□□□ 1.09
LIG1-204ENST00000542460 RIC3Q7Z5B4 369 aa21.85■■□□□ 1.09
LIG1-204ENST00000542460 NLGN1Q8N2Q7 840 aa21.85■■□□□ 1.09
LIG1-204ENST00000542460 BCL2L12Q9HB09 334 aa21.85■■□□□ 1.09
LIG1-204ENST00000542460 KSR2Q6VAB6 950 aa21.84■■□□□ 1.09
LIG1-204ENST00000542460 PTPRCP08575 1304 aa21.83■■□□□ 1.09
LIG1-204ENST00000542460 KIF16BQ96L93 1317 aa21.83■■□□□ 1.09
LIG1-204ENST00000542460 PI4KAP2A4QPH2 592 aa21.83■■□□□ 1.09
LIG1-204ENST00000542460 HLFQ16534 295 aa21.83■■□□□ 1.09
LIG1-204ENST00000542460 GIGYF2Q6Y7W6 1299 aaKnown RBP21.83■■□□□ 1.09
LIG1-204ENST00000542460 PI4KAP1Q8N8J0 262 aa21.83■■□□□ 1.09
LIG1-204ENST00000542460 C4AP0C0L4 1744 aa21.83■■□□□ 1.08
LIG1-204ENST00000542460 CASZ1Q86V15 1759 aa21.82■■□□□ 1.08
LIG1-204ENST00000542460 NOB1Q9ULX3 412 aaKnown RBP21.82■■□□□ 1.08
LIG1-204ENST00000542460 FKBP8Q14318 412 aa21.81■■□□□ 1.08
LIG1-204ENST00000542460 MTFR1LQ9H019 292 aa21.81■■□□□ 1.08
LIG1-204ENST00000542460 MAP3K2Q9Y2U5 619 aa21.81■■□□□ 1.08
LIG1-204ENST00000542460 CACNA1FO60840 1977 aa21.81■■□□□ 1.08
LIG1-204ENST00000542460 IPO8O15397 1037 aaKnown RBP21.8■■□□□ 1.08
LIG1-204ENST00000542460 HSP90AB3PQ58FF7 597 aa21.8■■□□□ 1.08
LIG1-204ENST00000542460 ARHGAP45Q92619 1136 aa21.8■■□□□ 1.08
LIG1-204ENST00000542460 SPON1Q9HCB6 807 aa21.8■■□□□ 1.08
LIG1-204ENST00000542460 ZBTB7AO95365 584 aa21.8■■□□□ 1.08
LIG1-204ENST00000542460 ADCY9O60503 1353 aa21.79■■□□□ 1.08
LIG1-204ENST00000542460 TCIRG1Q13488 830 aa21.79■■□□□ 1.08
LIG1-204ENST00000542460 MSL1Q68DK7 614 aa21.79■■□□□ 1.08
LIG1-204ENST00000542460 DNAAF4Q8WXU2 420 aa21.79■■□□□ 1.08
LIG1-204ENST00000542460 FRAT1Q92837 279 aaPredicted RBP21.79■■□□□ 1.08
LIG1-204ENST00000542460 METTL22Q9BUU2 404 aaPredicted RBP21.79■■□□□ 1.08
LIG1-204ENST00000542460 TBC1D9BQ66K14 1250 aa21.78■■□□□ 1.08
LIG1-204ENST00000542460 API5Q9BZZ5 524 aaKnown RBP21.78■■□□□ 1.08
LIG1-204ENST00000542460 SCN7AQ01118 1682 aa21.77■■□□□ 1.08
LIG1-204ENST00000542460 TM4SF1P30408 202 aa21.77■■□□□ 1.08
LIG1-204ENST00000542460 SETDB2Q96T68 719 aa21.77■■□□□ 1.08
LIG1-204ENST00000542460 PPP1R1BQ9UD71 204 aaPredicted RBP21.77■■□□□ 1.08
LIG1-204ENST00000542460 NIP7Q9Y221 180 aaKnown RBP eCLIP21.77■■□□□ 1.08
LIG1-204ENST00000542460 F6X3S4 739 aa21.76■■□□□ 1.07
LIG1-204ENST00000542460 NEXNQ0ZGT2 675 aa21.76■■□□□ 1.07
LIG1-204ENST00000542460 NFIXQ14938 502 aa21.76■■□□□ 1.07
LIG1-204ENST00000542460 ZKSCAN2Q63HK3 967 aa21.76■■□□□ 1.07
LIG1-204ENST00000542460 BICDL1Q6ZP65 573 aa21.76■■□□□ 1.07
LIG1-204ENST00000542460 ZNF34Q8IZ26 560 aa21.76■■□□□ 1.07
LIG1-204ENST00000542460 ATF5Q9Y2D1 282 aaPredicted RBP21.76■■□□□ 1.07
LIG1-204ENST00000542460 ATP10DQ9P241 1426 aa21.76■■□□□ 1.07
LIG1-204ENST00000542460 BCORQ6W2J9 1755 aa21.76■■□□□ 1.07
LIG1-204ENST00000542460 MYD88Q99836 296 aa21.75■■□□□ 1.07
LIG1-204ENST00000542460 ATF7IPQ6VMQ6 1270 aa21.75■■□□□ 1.07
LIG1-204ENST00000542460 MMP10P09238 476 aa21.74■■□□□ 1.07
LIG1-204ENST00000542460 GPTP24298 496 aa21.74■■□□□ 1.07
LIG1-204ENST00000542460 TRIM28Q13263 835 aaKnown RBP21.74■■□□□ 1.07
LIG1-204ENST00000542460 ISCA1Q9BUE6 129 aa21.74■■□□□ 1.07
LIG1-204ENST00000542460 ATP5J2-PTCD1G3V325 749 aa21.73■■□□□ 1.07
LIG1-204ENST00000542460 TRIM27P14373 513 aa21.73■■□□□ 1.07
LIG1-204ENST00000542460 POLD1P28340 1107 aa21.73■■□□□ 1.07
LIG1-204ENST00000542460 PARP10Q53GL7 1025 aa21.73■■□□□ 1.07
LIG1-204ENST00000542460 SLC4A10Q6U841 1118 aa21.73■■□□□ 1.07
LIG1-204ENST00000542460 GOLGA6L2Q8N9W4 650 aaPredicted RBP21.73■■□□□ 1.07
LIG1-204ENST00000542460 PARP3Q9Y6F1 533 aa21.73■■□□□ 1.07
LIG1-204ENST00000542460 CARMIL3Q8ND23 1372 aa21.72■■□□□ 1.07
LIG1-204ENST00000542460 LINS1Q8NG48 757 aa21.72■■□□□ 1.07
LIG1-204ENST00000542460 UBN2Q6ZU65 1347 aa21.71■■□□□ 1.07
LIG1-204ENST00000542460 POLRMTO00411 1230 aaKnown RBP21.71■■□□□ 1.07
LIG1-204ENST00000542460 DDR1Q08345 913 aa21.71■■□□□ 1.07
LIG1-204ENST00000542460 BEND3Q5T5X7 828 aa21.71■■□□□ 1.07
LIG1-204ENST00000542460 NLRP10Q86W26 655 aa21.71■■□□□ 1.07
LIG1-204ENST00000542460 ARFGEF2Q9Y6D5 1785 aa21.71■■□□□ 1.07
LIG1-204ENST00000542460 NUP98P52948 1817 aa21.71■■□□□ 1.07
LIG1-204ENST00000542460 IGKV5-2P06315 115 aa21.7■■□□□ 1.07
LIG1-204ENST00000542460 CCDC191Q8NCU4 936 aa21.7■■□□□ 1.07
LIG1-204ENST00000542460 SERPINB2P05120 415 aa21.7■■□□□ 1.06
LIG1-204ENST00000542460 PTGER2P43116 358 aa21.7■■□□□ 1.06
LIG1-204ENST00000542460 CWF19L2Q2TBE0 894 aaKnown RBP21.7■■□□□ 1.06
LIG1-204ENST00000542460 PPP1R42Q7Z4L9 355 aa21.7■■□□□ 1.06
LIG1-204ENST00000542460 SGIP1Q9BQI5 828 aa21.7■■□□□ 1.06
LIG1-204ENST00000542460 SRCIN1Q9C0H9 1055 aa21.7■■□□□ 1.06
LIG1-204ENST00000542460 NEURL1BA8MQ27 555 aa21.69■■□□□ 1.06
LIG1-204ENST00000542460 MS4A1P11836 297 aa21.69■■□□□ 1.06
LIG1-204ENST00000542460 CCT4P50991 539 aaKnown RBP21.69■■□□□ 1.06
LIG1-204ENST00000542460 SUSD4Q5VX71 490 aa21.69■■□□□ 1.06
LIG1-204ENST00000542460 TPTE2Q6XPS3 522 aa21.69■■□□□ 1.06
LIG1-204ENST00000542460 NBPF5PQ86XG9 351 aaPredicted RBP21.69■■□□□ 1.06
LIG1-204ENST00000542460 CLUAP1Q96AJ1 413 aa21.69■■□□□ 1.06
LIG1-204ENST00000542460 NYXQ9GZU5 481 aa21.69■■□□□ 1.06
LIG1-204ENST00000542460 CWC25Q9NXE8 425 aaPredicted RBP21.69■■□□□ 1.06
LIG1-204ENST00000542460 ABCC4O15439 1325 aa21.68■■□□□ 1.06
LIG1-204ENST00000542460 PXDNLA1KZ92 1463 aa21.68■■□□□ 1.06
Retrieved 100 of 20,778 RNA–protein pairs in 122.7 ms