RNA–Protein interactions for RNA: ENST00000541953.5

CLSTN3-213, Transcript of calsyntenin 3, humanhuman

TSL 5

Gene CLSTN3, Length 570 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLSTN3-213ENST00000541953 NBPF15Q8N660 670 aa20.74■□□□□ 0.91
CLSTN3-213ENST00000541953 DLG5Q8TDM6 1919 aa20.73■□□□□ 0.91
CLSTN3-213ENST00000541953 LAMB4A4D0S4 1761 aa20.73■□□□□ 0.91
CLSTN3-213ENST00000541953 VEGFAP15692 232 aaPredicted RBP20.73■□□□□ 0.91
CLSTN3-213ENST00000541953 SETDB2Q96T68 719 aa20.73■□□□□ 0.91
CLSTN3-213ENST00000541953 POTEIP0CG38 1075 aa20.72■□□□□ 0.91
CLSTN3-213ENST00000541953 POTEJP0CG39 1038 aa20.72■□□□□ 0.91
CLSTN3-213ENST00000541953 U2AF1L5P0DN76 240 aaPredicted RBP20.72■□□□□ 0.91
CLSTN3-213ENST00000541953 SRGNP10124 158 aa20.72■□□□□ 0.91
CLSTN3-213ENST00000541953 U2AF1Q01081 240 aaKnown RBP eCLIP20.72■□□□□ 0.91
CLSTN3-213ENST00000541953 PRPF40BQ6NWY9 871 aaKnown RBP20.72■□□□□ 0.91
CLSTN3-213ENST00000541953 ERFEQ4G0M1 354 aa20.71■□□□□ 0.91
CLSTN3-213ENST00000541953 COL13A1Q5TAT6 717 aaPredicted RBP20.71■□□□□ 0.91
CLSTN3-213ENST00000541953 OLFM4Q6UX06 510 aa20.71■□□□□ 0.91
CLSTN3-213ENST00000541953 CFAP53Q96M91 514 aa20.71■□□□□ 0.91
CLSTN3-213ENST00000541953 KDM3BQ7LBC6 1761 aa20.71■□□□□ 0.91
CLSTN3-213ENST00000541953 MIS18AQ9NYP9 233 aa20.7■□□□□ 0.9
CLSTN3-213ENST00000541953 STYK1Q6J9G0 422 aa20.69■□□□□ 0.9
CLSTN3-213ENST00000541953 TAOK3Q9H2K8 898 aa20.69■□□□□ 0.9
CLSTN3-213ENST00000541953 LTBP3Q9NS15 1303 aa20.69■□□□□ 0.9
CLSTN3-213ENST00000541953 DDNO94850 711 aaPredicted RBP20.68■□□□□ 0.9
CLSTN3-213ENST00000541953 ST5P78524 1137 aa20.68■□□□□ 0.9
CLSTN3-213ENST00000541953 C7orf43Q8WVR3 580 aa20.68■□□□□ 0.9
CLSTN3-213ENST00000541953 PDZRN3Q9UPQ7 1066 aa20.68■□□□□ 0.9
CLSTN3-213ENST00000541953 SNRPA1P09661 255 aaKnown RBP20.67■□□□□ 0.9
CLSTN3-213ENST00000541953 HLFQ16534 295 aa20.67■□□□□ 0.9
CLSTN3-213ENST00000541953 NBPF5PQ86XG9 351 aaPredicted RBP20.67■□□□□ 0.9
CLSTN3-213ENST00000541953 CNKSR1Q969H4 720 aa20.67■□□□□ 0.9
CLSTN3-213ENST00000541953 MASTLQ96GX5 879 aa20.67■□□□□ 0.9
CLSTN3-213ENST00000541953 FAM177BA6PVY3 158 aa20.66■□□□□ 0.9
CLSTN3-213ENST00000541953 NPHP1O15259 732 aa20.66■□□□□ 0.9
CLSTN3-213ENST00000541953 SLC51AQ86UW1 340 aa20.66■□□□□ 0.9
CLSTN3-213ENST00000541953 NUDCQ9Y266 331 aa20.66■□□□□ 0.9
CLSTN3-213ENST00000541953 NPM2Q86SE8 214 aaKnown RBP20.65■□□□□ 0.9
CLSTN3-213ENST00000541953 RTF1Q92541 710 aaKnown RBP20.65■□□□□ 0.9
CLSTN3-213ENST00000541953 ABCC12Q96J65 1359 aa20.64■□□□□ 0.89
CLSTN3-213ENST00000541953 CLEC4GQ6UXB4 293 aa20.64■□□□□ 0.89
CLSTN3-213ENST00000541953 NIP7Q9Y221 180 aaKnown RBP eCLIP20.64■□□□□ 0.89
CLSTN3-213ENST00000541953 SNED1Q8TER0 1413 aa20.63■□□□□ 0.89
CLSTN3-213ENST00000541953 NUP98P52948 1817 aa20.63■□□□□ 0.89
CLSTN3-213ENST00000541953 KLRG2A4D1S0 409 aaPredicted RBP20.63■□□□□ 0.89
CLSTN3-213ENST00000541953 DPY19L2Q6NUT2 758 aa20.63■□□□□ 0.89
CLSTN3-213ENST00000541953 THUMPD2Q9BTF0 503 aaKnown RBP20.63■□□□□ 0.89
CLSTN3-213ENST00000541953 ZNF541Q9H0D2 1346 aa20.62■□□□□ 0.89
CLSTN3-213ENST00000541953 COL4A5P29400 1685 aa20.62■□□□□ 0.89
CLSTN3-213ENST00000541953 TAF7Q15545 349 aaPredicted RBP20.61■□□□□ 0.89
CLSTN3-213ENST00000541953 ZNF277Q9NRM2 450 aaPredicted RBP20.61■□□□□ 0.89
CLSTN3-213ENST00000541953 ZNF652Q9Y2D9 606 aa20.61■□□□□ 0.89
CLSTN3-213ENST00000541953 ADAMTSL1Q8N6G6 1762 aa20.6■□□□□ 0.89
CLSTN3-213ENST00000541953 HTATSF1O43719 755 aaKnown RBP20.6■□□□□ 0.89
CLSTN3-213ENST00000541953 HSPA1AP0DMV8 641 aaKnown RBP20.6■□□□□ 0.89
CLSTN3-213ENST00000541953 HSPA1BP0DMV9 641 aaKnown RBP20.6■□□□□ 0.89
CLSTN3-213ENST00000541953 NPR1P16066 1061 aa20.6■□□□□ 0.89
CLSTN3-213ENST00000541953 SCN4AP35499 1836 aa20.6■□□□□ 0.89
CLSTN3-213ENST00000541953 CCDC93Q567U6 631 aa20.59■□□□□ 0.89
CLSTN3-213ENST00000541953 CHADLQ6NUI6 762 aa20.59■□□□□ 0.89
CLSTN3-213ENST00000541953 TTLL7Q6ZT98 887 aa20.59■□□□□ 0.89
CLSTN3-213ENST00000541953 NUTM1Q86Y26 1132 aa20.59■□□□□ 0.89
CLSTN3-213ENST00000541953 NGEFQ8N5V2 710 aa20.59■□□□□ 0.89
CLSTN3-213ENST00000541953 PLEKHF1Q96S99 279 aa20.59■□□□□ 0.89
CLSTN3-213ENST00000541953 FKBP4Q02790 459 aaKnown RBP eCLIP20.57■□□□□ 0.88
CLSTN3-213ENST00000541953 SOGA3Q5TF21 947 aa20.57■□□□□ 0.88
CLSTN3-213ENST00000541953 TPTE2Q6XPS3 522 aa20.57■□□□□ 0.88
CLSTN3-213ENST00000541953 UBN2Q6ZU65 1347 aa20.56■□□□□ 0.88
CLSTN3-213ENST00000541953 EIF4A1P60842 406 aaKnown RBP20.56■□□□□ 0.88
CLSTN3-213ENST00000541953 L3MBTL3Q96JM7 780 aaPredicted RBP20.56■□□□□ 0.88
CLSTN3-213ENST00000541953 TAF1DQ9H5J8 278 aaPredicted RBP20.56■□□□□ 0.88
CLSTN3-213ENST00000541953 MKRN1Q9UHC7 482 aaKnown RBP20.56■□□□□ 0.88
CLSTN3-213ENST00000541953 LTBP1Q14766 1721 aa20.56■□□□□ 0.88
CLSTN3-213ENST00000541953 RGL2O15211 777 aa20.55■□□□□ 0.88
CLSTN3-213ENST00000541953 CAPN15O75808 1086 aa20.55■□□□□ 0.88
CLSTN3-213ENST00000541953 PASKQ96RG2 1323 aa20.54■□□□□ 0.88
CLSTN3-213ENST00000541953 C3orf67Q6ZVT6 689 aa20.54■□□□□ 0.88
CLSTN3-213ENST00000541953 RRP7AQ9Y3A4 280 aaKnown RBP20.54■□□□□ 0.88
CLSTN3-213ENST00000541953 MAP3K15Q6ZN16 1313 aa20.53■□□□□ 0.88
CLSTN3-213ENST00000541953 MYL6BP14649 208 aa20.53■□□□□ 0.88
CLSTN3-213ENST00000541953 GPTP24298 496 aa20.53■□□□□ 0.88
CLSTN3-213ENST00000541953 NFE2L2Q16236 605 aa20.53■□□□□ 0.88
CLSTN3-213ENST00000541953 CRY2Q49AN0 593 aa20.53■□□□□ 0.88
CLSTN3-213ENST00000541953 ZBTB3Q9H5J0 574 aa20.53■□□□□ 0.88
CLSTN3-213ENST00000541953 CREBZFQ9NS37 354 aa20.53■□□□□ 0.88
CLSTN3-213ENST00000541953 RNF123Q5XPI4 1314 aa20.53■□□□□ 0.88
CLSTN3-213ENST00000541953 TNS4Q8IZW8 715 aa20.52■□□□□ 0.88
CLSTN3-213ENST00000541953 SYNE4Q8N205 404 aa20.52■□□□□ 0.88
CLSTN3-213ENST00000541953 ITGBL1O95965 494 aaPredicted RBP20.51■□□□□ 0.87
CLSTN3-213ENST00000541953 IARSP41252 1262 aaKnown RBP20.51■□□□□ 0.87
CLSTN3-213ENST00000541953 LDHDQ86WU2 507 aa20.51■□□□□ 0.87
CLSTN3-213ENST00000541953 ERVV-1B6SEH8 477 aa20.5■□□□□ 0.87
CLSTN3-213ENST00000541953 FZD9O00144 591 aa20.5■□□□□ 0.87
CLSTN3-213ENST00000541953 EAPPQ56P03 285 aaPredicted RBP20.5■□□□□ 0.87
CLSTN3-213ENST00000541953 SUSD4Q5VX71 490 aa20.5■□□□□ 0.87
CLSTN3-213ENST00000541953 LRP10Q7Z4F1 713 aa20.5■□□□□ 0.87
CLSTN3-213ENST00000541953 RIC1Q4ADV7 1423 aa20.5■□□□□ 0.87
CLSTN3-213ENST00000541953 CNTNAP1P78357 1384 aa20.49■□□□□ 0.87
CLSTN3-213ENST00000541953 IQCA1LA6NCM1 817 aa20.49■□□□□ 0.87
CLSTN3-213ENST00000541953 NTSR2O95665 410 aa20.49■□□□□ 0.87
CLSTN3-213ENST00000541953 GTF2E1P29083 439 aaPredicted RBP20.49■□□□□ 0.87
CLSTN3-213ENST00000541953 PROSER3Q2NL68 480 aa20.49■□□□□ 0.87
CLSTN3-213ENST00000541953 RTKN2Q8IZC4 609 aa20.49■□□□□ 0.87
CLSTN3-213ENST00000541953 LAMB2P55268 1798 aa20.49■□□□□ 0.87
Retrieved 100 of 20,778 RNA–protein pairs in 43.6 ms