RNA–Protein interactions for RNA: ENST00000541259.1

DDX55-208, Transcript of DEAD-box helicase 55, humanhuman

TSL 3

Gene DDX55, Length 460 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
DDX55-208ENST00000541259 DEFB132Q7Z7B7 95 aa11.96□□□□□ -0.49
DDX55-208ENST00000541259 CAMKK2Q96RR4 588 aa11.96□□□□□ -0.49
DDX55-208ENST00000541259 DDX21Q9NR30 783 aaKnown RBP eCLIP11.96□□□□□ -0.49
DDX55-208ENST00000541259 DBF4Q9UBU7 674 aaPredicted RBP11.96□□□□□ -0.49
DDX55-208ENST00000541259 NOB1Q9ULX3 412 aaKnown RBP11.96□□□□□ -0.49
DDX55-208ENST00000541259 TNNQ9UQP3 1299 aa11.96□□□□□ -0.49
DDX55-208ENST00000541259 ZBTB1Q9Y2K1 713 aa11.96□□□□□ -0.49
DDX55-208ENST00000541259 UBR3Q6ZT12 1888 aa11.95□□□□□ -0.5
DDX55-208ENST00000541259 TUBGCP6Q96RT7 1819 aa11.95□□□□□ -0.5
DDX55-208ENST00000541259 SMIM5Q71RC9 77 aa11.95□□□□□ -0.5
DDX55-208ENST00000541259 FRAT1Q92837 279 aaPredicted RBP11.95□□□□□ -0.5
DDX55-208ENST00000541259 CCDC87Q9NVE4 849 aa11.95□□□□□ -0.5
DDX55-208ENST00000541259 RNF123Q5XPI4 1314 aa11.94□□□□□ -0.5
DDX55-208ENST00000541259 RGL2O15211 777 aa11.94□□□□□ -0.5
DDX55-208ENST00000541259 BRPF1P55201 1214 aaPredicted RBP11.94□□□□□ -0.5
DDX55-208ENST00000541259 SF3B2Q13435 895 aaKnown RBP11.94□□□□□ -0.5
DDX55-208ENST00000541259 SLC27A3Q5K4L6 730 aa11.94□□□□□ -0.5
DDX55-208ENST00000541259 UPF1Q92900 1129 aaKnown RBP eCLIP11.94□□□□□ -0.5
DDX55-208ENST00000541259 CHMP4AQ9BY43 222 aa11.94□□□□□ -0.5
DDX55-208ENST00000541259 NUP188Q5SRE5 1749 aa11.94□□□□□ -0.5
DDX55-208ENST00000541259 NUP98P52948 1817 aa11.93□□□□□ -0.5
DDX55-208ENST00000541259 ERBB4Q15303 1308 aa11.93□□□□□ -0.5
DDX55-208ENST00000541259 BAG6P46379 1132 aa11.93□□□□□ -0.5
DDX55-208ENST00000541259 RRP1P56182 461 aaKnown RBP11.93□□□□□ -0.5
DDX55-208ENST00000541259 AIMP1Q12904 312 aaKnown RBP11.93□□□□□ -0.5
DDX55-208ENST00000541259 FLIIQ13045 1269 aa11.93□□□□□ -0.5
DDX55-208ENST00000541259 AMIGO3Q86WK7 504 aa11.93□□□□□ -0.5
DDX55-208ENST00000541259 XAGE3Q8WTP9 111 aa11.93□□□□□ -0.5
DDX55-208ENST00000541259 HYPKQ9NX55 129 aa11.93□□□□□ -0.5
DDX55-208ENST00000541259 ZNF330Q9Y3S2 320 aaPredicted RBP11.93□□□□□ -0.5
DDX55-208ENST00000541259 ARFGEF2Q9Y6D5 1785 aa11.92□□□□□ -0.5
DDX55-208ENST00000541259 CNTNAP4Q9C0A0 1308 aa11.92□□□□□ -0.5
DDX55-208ENST00000541259 RC3H1Q5TC82 1133 aaKnown RBP11.92□□□□□ -0.5
DDX55-208ENST00000541259 C20orf194Q5TEA3 1177 aa11.92□□□□□ -0.5
DDX55-208ENST00000541259 TTLL7Q6ZT98 887 aa11.92□□□□□ -0.5
DDX55-208ENST00000541259 COPS6Q7L5N1 327 aa11.92□□□□□ -0.5
DDX55-208ENST00000541259 CCDC125Q86Z20 511 aa11.92□□□□□ -0.5
DDX55-208ENST00000541259 IL6STP40189 918 aaPredicted RBP11.91□□□□□ -0.5
DDX55-208ENST00000541259 EIF5P55010 431 aaKnown RBP11.91□□□□□ -0.5
DDX55-208ENST00000541259 IRX6P78412 446 aaPredicted RBP11.91□□□□□ -0.5
DDX55-208ENST00000541259 ZKSCAN2Q63HK3 967 aa11.91□□□□□ -0.5
DDX55-208ENST00000541259 C4AP0C0L4 1744 aa11.91□□□□□ -0.5
DDX55-208ENST00000541259 KIF16BQ96L93 1317 aa11.9□□□□□ -0.5
DDX55-208ENST00000541259 F6X3S4 739 aa11.9□□□□□ -0.5
DDX55-208ENST00000541259 GNPATO15228 680 aa11.9□□□□□ -0.5
DDX55-208ENST00000541259 RPS6KA4O75676 772 aa11.9□□□□□ -0.5
DDX55-208ENST00000541259 PYGBP11216 843 aa11.9□□□□□ -0.5
DDX55-208ENST00000541259 RLBP1P12271 317 aa11.9□□□□□ -0.5
DDX55-208ENST00000541259 TRIM27P14373 513 aa11.9□□□□□ -0.5
DDX55-208ENST00000541259 FKBP5Q13451 457 aaPredicted RBP11.9□□□□□ -0.5
DDX55-208ENST00000541259 ZNF827Q17R98 1081 aa11.9□□□□□ -0.5
DDX55-208ENST00000541259 ATF7IPQ6VMQ6 1270 aa11.9□□□□□ -0.5
DDX55-208ENST00000541259 PANK1Q8TE04 598 aa11.9□□□□□ -0.5
DDX55-208ENST00000541259 CLUAP1Q96AJ1 413 aa11.9□□□□□ -0.5
DDX55-208ENST00000541259 AK7Q96M32 723 aa11.9□□□□□ -0.5
DDX55-208ENST00000541259 ARXQ96QS3 562 aa11.9□□□□□ -0.5
DDX55-208ENST00000541259 TAOK2Q9UL54 1235 aa11.9□□□□□ -0.5
DDX55-208ENST00000541259 AFDNP55196 1824 aaKnown RBP11.9□□□□□ -0.5
DDX55-208ENST00000541259 PTPRCP08575 1304 aa11.89□□□□□ -0.51
DDX55-208ENST00000541259 PI4KAP2A4QPH2 592 aa11.89□□□□□ -0.51
DDX55-208ENST00000541259 IPO8O15397 1037 aaKnown RBP11.89□□□□□ -0.51
DDX55-208ENST00000541259 PI4KAP1Q8N8J0 262 aa11.89□□□□□ -0.51
DDX55-208ENST00000541259 GOLGA6L2Q8N9W4 650 aaPredicted RBP11.89□□□□□ -0.51
DDX55-208ENST00000541259 ARHGAP45Q92619 1136 aa11.89□□□□□ -0.51
DDX55-208ENST00000541259 TBC1D2BQ9UPU7 963 aa11.89□□□□□ -0.51
DDX55-208ENST00000541259 BCORQ6W2J9 1755 aa11.89□□□□□ -0.51
DDX55-208ENST00000541259 N4BP2Q86UW6 1770 aaPredicted RBP11.89□□□□□ -0.51
DDX55-208ENST00000541259 ADCY9O60503 1353 aa11.89□□□□□ -0.51
DDX55-208ENST00000541259 COL15A1P39059 1388 aa11.89□□□□□ -0.51
DDX55-208ENST00000541259 ANKRD36CQ5JPF3 1778 aa11.88□□□□□ -0.51
DDX55-208ENST00000541259 PHF14O94880 888 aa11.88□□□□□ -0.51
DDX55-208ENST00000541259 CHRM1P11229 460 aaPredicted RBP11.88□□□□□ -0.51
DDX55-208ENST00000541259 KSR2Q6VAB6 950 aa11.88□□□□□ -0.51
DDX55-208ENST00000541259 ANKRD13DQ6ZTN6 518 aa11.88□□□□□ -0.51
DDX55-208ENST00000541259 API5Q9BZZ5 524 aaKnown RBP11.88□□□□□ -0.51
DDX55-208ENST00000541259 ZBTB3Q9H5J0 574 aa11.88□□□□□ -0.51
DDX55-208ENST00000541259 MAP3K2Q9Y2U5 619 aa11.88□□□□□ -0.51
DDX55-208ENST00000541259 RTCBQ9Y3I0 505 aaKnown RBP11.88□□□□□ -0.51
DDX55-208ENST00000541259 HLFQ16534 295 aa11.87□□□□□ -0.51
DDX55-208ENST00000541259 SLC4A10Q6U841 1118 aa11.87□□□□□ -0.51
DDX55-208ENST00000541259 RIC3Q7Z5B4 369 aa11.87□□□□□ -0.51
DDX55-208ENST00000541259 DZIP3Q86Y13 1208 aaKnown RBP11.87□□□□□ -0.51
DDX55-208ENST00000541259 DZIP1LQ8IYY4 767 aaKnown RBP11.87□□□□□ -0.51
DDX55-208ENST00000541259 ARHGEF1Q92888 912 aaKnown RBP11.87□□□□□ -0.51
DDX55-208ENST00000541259 ANO8Q9HCE9 1232 aaPredicted RBP11.87□□□□□ -0.51
DDX55-208ENST00000541259 ABCC4O15439 1325 aa11.86□□□□□ -0.51
DDX55-208ENST00000541259 MAP3K15Q6ZN16 1313 aa11.86□□□□□ -0.51
DDX55-208ENST00000541259 QSER1Q2KHR3 1735 aa11.86□□□□□ -0.51
DDX55-208ENST00000541259 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP11.86□□□□□ -0.51
DDX55-208ENST00000541259 CAMTA2O94983 1202 aa11.86□□□□□ -0.51
DDX55-208ENST00000541259 DDX58O95786 925 aaKnown RBP11.86□□□□□ -0.51
DDX55-208ENST00000541259 TRAPPC3LQ5T215 181 aa11.86□□□□□ -0.51
DDX55-208ENST00000541259 KIF6Q6ZMV9 814 aa11.86□□□□□ -0.51
DDX55-208ENST00000541259 NPM2Q86SE8 214 aaKnown RBP11.86□□□□□ -0.51
DDX55-208ENST00000541259 TMEM57Q8N5G2 664 aa11.86□□□□□ -0.51
DDX55-208ENST00000541259 PLBD2Q8NHP8 589 aa11.86□□□□□ -0.51
DDX55-208ENST00000541259 DNAAF4Q8WXU2 420 aa11.86□□□□□ -0.51
DDX55-208ENST00000541259 TFCP2L1Q9NZI6 479 aa11.86□□□□□ -0.51
DDX55-208ENST00000541259 SRP68Q9UHB9 627 aaKnown RBP11.86□□□□□ -0.51
DDX55-208ENST00000541259 SCN7AQ01118 1682 aa11.85□□□□□ -0.51
Retrieved 100 of 20,778 RNA–protein pairs in 50.6 ms