RNA–Protein interactions for RNA: ENST00000538686.6

USP3-203, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 1 (best)

Gene USP3, Length 2,077 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-203ENST00000538686 DNAJC21Q5F1R6 531 aaKnown RBP14.57□□□□□ -0.08
USP3-203ENST00000538686 NBPF10Q6P3W6 841 aaKnown RBP14.57□□□□□ -0.08
USP3-203ENST00000538686 FOXD4L3Q6VB84 417 aaPredicted RBP14.57□□□□□ -0.08
USP3-203ENST00000538686 GPR161Q8N6U8 529 aaKnown RBP14.57□□□□□ -0.08
USP3-203ENST00000538686 TSR2Q969E8 191 aaKnown RBP14.57□□□□□ -0.08
USP3-203ENST00000538686 DCTPP1Q9H773 170 aa14.57□□□□□ -0.08
USP3-203ENST00000538686 DUOX2Q9NRD8 1548 aa14.56□□□□□ -0.08
USP3-203ENST00000538686 FIBPO43427 364 aa14.56□□□□□ -0.08
USP3-203ENST00000538686 STX6O43752 255 aa14.56□□□□□ -0.08
USP3-203ENST00000538686 SETQ01105 290 aaPredicted RBP14.56□□□□□ -0.08
USP3-203ENST00000538686 ZKSCAN8Q15776 578 aaPredicted RBP14.56□□□□□ -0.08
USP3-203ENST00000538686 CCDC144BQ3MJ40 725 aa14.56□□□□□ -0.08
USP3-203ENST00000538686 CCDC144CPQ8IYA2 1237 aa14.56□□□□□ -0.08
USP3-203ENST00000538686 UTP14AQ9BVJ6 771 aaKnown RBP14.56□□□□□ -0.08
USP3-203ENST00000538686 CCZ1BP86790 482 aa14.56□□□□□ -0.08
USP3-203ENST00000538686 CCZ1P86791 482 aaPredicted RBP14.56□□□□□ -0.08
USP3-203ENST00000538686 ANO6Q4KMQ2 910 aa14.56□□□□□ -0.08
USP3-203ENST00000538686 NBPF11Q86T75 865 aa14.56□□□□□ -0.08
USP3-203ENST00000538686 DDX19AQ9NUU7 478 aaKnown RBP14.56□□□□□ -0.08
USP3-203ENST00000538686 CCDC69A6NI79 296 aa14.55□□□□□ -0.08
USP3-203ENST00000538686 TADA3O75528 432 aa14.55□□□□□ -0.08
USP3-203ENST00000538686 RBM43Q6ZSC3 357 aaKnown RBP14.55□□□□□ -0.08
USP3-203ENST00000538686 MORC1Q86VD1 984 aa14.55□□□□□ -0.08
USP3-203ENST00000538686 SIRT2Q8IXJ6 389 aa14.55□□□□□ -0.08
USP3-203ENST00000538686 ZCCHC17Q9NP64 241 aaKnown RBP14.55□□□□□ -0.08
USP3-203ENST00000538686 FBXO3Q9UK99 471 aa14.55□□□□□ -0.08
USP3-203ENST00000538686 GTF3C5Q9Y5Q8 519 aaPredicted RBP14.55□□□□□ -0.08
USP3-203ENST00000538686 UNC13BO14795 1591 aa14.55□□□□□ -0.08
USP3-203ENST00000538686 TOPBP1Q92547 1522 aa14.55□□□□□ -0.08
USP3-203ENST00000538686 DISP1Q96F81 1524 aa14.55□□□□□ -0.08
USP3-203ENST00000538686 TTC41PQ6P2S7 1318 aa14.55□□□□□ -0.08
USP3-203ENST00000538686 KLHL33A6NCF5 533 aa14.54□□□□□ -0.08
USP3-203ENST00000538686 GOLGA6L19H0YKK7 550 aa14.54□□□□□ -0.08
USP3-203ENST00000538686 USP32Q8NFA0 1604 aa14.54□□□□□ -0.08
USP3-203ENST00000538686 EIF3JO75822 258 aaKnown RBP14.54□□□□□ -0.08
USP3-203ENST00000538686 SASH3O75995 380 aa14.54□□□□□ -0.08
USP3-203ENST00000538686 TSPY4P0CV99 314 aa14.54□□□□□ -0.08
USP3-203ENST00000538686 TSPY10P0CW01 314 aa14.54□□□□□ -0.08
USP3-203ENST00000538686 MNAT1P51948 309 aa14.54□□□□□ -0.08
USP3-203ENST00000538686 LRRFIP1Q32MZ4 808 aaKnown RBP14.54□□□□□ -0.08
USP3-203ENST00000538686 TNMDQ9H2S6 317 aa14.54□□□□□ -0.08
USP3-203ENST00000538686 IMPACTQ9P2X3 320 aa14.54□□□□□ -0.08
USP3-203ENST00000538686 DNAI1Q9UI46 699 aa14.54□□□□□ -0.08
USP3-203ENST00000538686 TRAPPC8Q9Y2L5 1435 aa14.54□□□□□ -0.08
USP3-203ENST00000538686 TTC21BQ7Z4L5 1316 aa14.53□□□□□ -0.08
USP3-203ENST00000538686 IFT140Q96RY7 1462 aa14.53□□□□□ -0.08
USP3-203ENST00000538686 IRF6O14896 467 aa14.53□□□□□ -0.08
USP3-203ENST00000538686 CLSTN1O94985 981 aa14.53□□□□□ -0.08
USP3-203ENST00000538686 ZNF165P49910 485 aa14.53□□□□□ -0.08
USP3-203ENST00000538686 IRX1P78414 480 aaPredicted RBP14.53□□□□□ -0.08
USP3-203ENST00000538686 C14orf37Q86TY3 774 aa14.53□□□□□ -0.08
USP3-203ENST00000538686 PDRG1Q9NUG6 133 aa14.53□□□□□ -0.08
USP3-203ENST00000538686 TRMT1Q9NXH9 659 aaKnown RBP14.53□□□□□ -0.08
USP3-203ENST00000538686 NUP153P49790 1475 aaKnown RBP14.53□□□□□ -0.08
USP3-203ENST00000538686 TULP1O00294 542 aaPredicted RBP14.53□□□□□ -0.08
USP3-203ENST00000538686 PPP2R5AQ15172 486 aa14.53□□□□□ -0.08
USP3-203ENST00000538686 MAP9Q49MG5 647 aa14.53□□□□□ -0.08
USP3-203ENST00000538686 TTLL5Q6EMB2 1281 aa14.53□□□□□ -0.08
USP3-203ENST00000538686 GIMAP7Q8NHV1 300 aa14.53□□□□□ -0.08
USP3-203ENST00000538686 ARHGEF5Q12774 1597 aa14.52□□□□□ -0.08
USP3-203ENST00000538686 RAPGEF6Q8TEU7 1601 aa14.52□□□□□ -0.08
USP3-203ENST00000538686 DDX11Q96FC9 970 aa14.52□□□□□ -0.09
USP3-203ENST00000538686 CARD14Q9BXL6 1004 aa14.52□□□□□ -0.09
USP3-203ENST00000538686 KIAA1210Q9ULL0 1709 aa14.52□□□□□ -0.09
USP3-203ENST00000538686 H0YHG0 523 aa14.51□□□□□ -0.09
USP3-203ENST00000538686 PPFIA4O75335 1185 aa14.51□□□□□ -0.09
USP3-203ENST00000538686 SEC31AO94979 1220 aaKnown RBP14.51□□□□□ -0.09
USP3-203ENST00000538686 SARNPP82979 210 aaKnown RBP14.51□□□□□ -0.09
USP3-203ENST00000538686 BRD3Q15059 726 aa14.51□□□□□ -0.09
USP3-203ENST00000538686 FMNL3Q8IVF7 1028 aa14.51□□□□□ -0.09
USP3-203ENST00000538686 CCDC150Q8NCX0 1101 aa14.51□□□□□ -0.09
USP3-203ENST00000538686 PPP1R13BQ96KQ4 1090 aa14.51□□□□□ -0.09
USP3-203ENST00000538686 FUT8Q9BYC5 575 aa14.51□□□□□ -0.09
USP3-203ENST00000538686 SH3BP1Q9Y3L3 701 aa14.51□□□□□ -0.09
USP3-203ENST00000538686 ABCC4O15439 1325 aa14.51□□□□□ -0.09
USP3-203ENST00000538686 TTC36A6NLP5 189 aa14.51□□□□□ -0.09
USP3-203ENST00000538686 SRGAP3O43295 1099 aa14.51□□□□□ -0.09
USP3-203ENST00000538686 ERLIN2O94905 339 aa14.51□□□□□ -0.09
USP3-203ENST00000538686 CCDC151A5D8V7 595 aa14.5□□□□□ -0.09
USP3-203ENST00000538686 MAP2K7O14733 419 aa14.5□□□□□ -0.09
USP3-203ENST00000538686 SYT1P21579 422 aa14.5□□□□□ -0.09
USP3-203ENST00000538686 ETF1P62495 437 aaKnown RBP14.5□□□□□ -0.09
USP3-203ENST00000538686 NBPF6Q5VWK0 638 aa14.5□□□□□ -0.09
USP3-203ENST00000538686 GBP6Q6ZN66 633 aa14.5□□□□□ -0.09
USP3-203ENST00000538686 FAM43BQ6ZT52 329 aaPredicted RBP14.5□□□□□ -0.09
USP3-203ENST00000538686 NBPF5PQ86XG9 351 aaPredicted RBP14.5□□□□□ -0.09
USP3-203ENST00000538686 CCDC34Q96HJ3 373 aa14.5□□□□□ -0.09
USP3-203ENST00000538686 NBPF4Q96M43 638 aa14.5□□□□□ -0.09
USP3-203ENST00000538686 OSBPL5Q9H0X9 879 aaPredicted RBP14.5□□□□□ -0.09
USP3-203ENST00000538686 CCDC9Q9Y3X0 531 aaKnown RBP14.5□□□□□ -0.09
USP3-203ENST00000538686 FANCD2Q9BXW9 1451 aa14.5□□□□□ -0.09
USP3-203ENST00000538686 IQGAP3Q86VI3 1631 aa14.5□□□□□ -0.09
USP3-203ENST00000538686 TMCO5BA8MYB1 307 aa14.5□□□□□ -0.09
USP3-203ENST00000538686 EVCP57679 992 aa14.5□□□□□ -0.09
USP3-203ENST00000538686 SEMA3FQ13275 785 aa14.5□□□□□ -0.09
USP3-203ENST00000538686 MICALL1Q8N3F8 863 aa14.5□□□□□ -0.09
USP3-203ENST00000538686 OSBPL3Q9H4L5 887 aa14.5□□□□□ -0.09
USP3-203ENST00000538686 GNL3LQ9NVN8 582 aaKnown RBP14.5□□□□□ -0.09
USP3-203ENST00000538686 TERF2IPQ9NYB0 399 aa14.5□□□□□ -0.09
USP3-203ENST00000538686 FANCAO15360 1455 aa14.49□□□□□ -0.09
Retrieved 100 of 20,778 RNA–protein pairs in 317.3 ms