RNA–Protein interactions for RNA: ENST00000537380.1

CIITA-203, Transcript of class II major histocompatibility complex transactivator, humanhuman

TSL 1 (best)

Gene CIITA, Length 1,062 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CIITA-203ENST00000537380 TNNQ9UQP3 1299 aa11.89□□□□□ -0.51
CIITA-203ENST00000537380 ATF5Q9Y2D1 282 aaPredicted RBP11.89□□□□□ -0.51
CIITA-203ENST00000537380 USP16Q9Y5T5 823 aa11.89□□□□□ -0.51
CIITA-203ENST00000537380 TCERG1O14776 1098 aaKnown RBP11.88□□□□□ -0.51
CIITA-203ENST00000537380 YY1P25490 414 aa11.88□□□□□ -0.51
CIITA-203ENST00000537380 POLD1P28340 1107 aa11.88□□□□□ -0.51
CIITA-203ENST00000537380 KSR2Q6VAB6 950 aa11.88□□□□□ -0.51
CIITA-203ENST00000537380 LINC00116Q8NCU8 138 aa11.88□□□□□ -0.51
CIITA-203ENST00000537380 MSH5O43196 834 aa11.87□□□□□ -0.51
CIITA-203ENST00000537380 ATP6V1AP38606 617 aa11.87□□□□□ -0.51
CIITA-203ENST00000537380 CENPQQ7L2Z9 268 aaPredicted RBP11.87□□□□□ -0.51
CIITA-203ENST00000537380 SLC16A10Q8TF71 515 aa11.87□□□□□ -0.51
CIITA-203ENST00000537380 TFCP2L1Q9NZI6 479 aa11.87□□□□□ -0.51
CIITA-203ENST00000537380 HDAC5Q9UQL6 1122 aa11.87□□□□□ -0.51
CIITA-203ENST00000537380 CNTNAP4Q9C0A0 1308 aa11.86□□□□□ -0.51
CIITA-203ENST00000537380 C4AP0C0L4 1744 aa11.86□□□□□ -0.51
CIITA-203ENST00000537380 PRAMEF22A3QJZ6 481 aa11.86□□□□□ -0.51
CIITA-203ENST00000537380 PTCD1O75127 700 aaKnown RBP11.86□□□□□ -0.51
CIITA-203ENST00000537380 ALDH1L1O75891 902 aa11.86□□□□□ -0.51
CIITA-203ENST00000537380 PTGER2P43116 358 aa11.86□□□□□ -0.51
CIITA-203ENST00000537380 HDAC1Q13547 482 aaPredicted RBP11.86□□□□□ -0.51
CIITA-203ENST00000537380 RC3H1Q5TC82 1133 aaKnown RBP11.86□□□□□ -0.51
CIITA-203ENST00000537380 AMIGO3Q86WK7 504 aa11.86□□□□□ -0.51
CIITA-203ENST00000537380 KLHL34Q8N239 644 aa11.86□□□□□ -0.51
CIITA-203ENST00000537380 DNAAF4Q8WXU2 420 aa11.86□□□□□ -0.51
CIITA-203ENST00000537380 SGIP1Q9BQI5 828 aa11.86□□□□□ -0.51
CIITA-203ENST00000537380 RBM42Q9BTD8 480 aaKnown RBP11.86□□□□□ -0.51
CIITA-203ENST00000537380 PHAXQ9H814 394 aaKnown RBP11.86□□□□□ -0.51
CIITA-203ENST00000537380 ADCY9O60503 1353 aa11.86□□□□□ -0.51
CIITA-203ENST00000537380 KDM2BQ8NHM5 1336 aa11.86□□□□□ -0.51
CIITA-203ENST00000537380 RGL2O15211 777 aa11.85□□□□□ -0.51
CIITA-203ENST00000537380 GNAI3P08754 354 aa11.85□□□□□ -0.51
CIITA-203ENST00000537380 CYP19A1P11511 503 aaPredicted RBP11.85□□□□□ -0.51
CIITA-203ENST00000537380 SSFA2P28290 1259 aa11.85□□□□□ -0.51
CIITA-203ENST00000537380 B4GALNT3Q6L9W6 998 aa11.85□□□□□ -0.51
CIITA-203ENST00000537380 PELP1Q8IZL8 1130 aaKnown RBP11.85□□□□□ -0.51
CIITA-203ENST00000537380 FLAD1Q8NFF5 587 aa11.85□□□□□ -0.51
CIITA-203ENST00000537380 NECTIN2Q92692 538 aa11.85□□□□□ -0.51
CIITA-203ENST00000537380 AK7Q96M32 723 aa11.85□□□□□ -0.51
CIITA-203ENST00000537380 RWDD1Q9H446 243 aaPredicted RBP11.85□□□□□ -0.51
CIITA-203ENST00000537380 PI4KAP2A4QPH2 592 aa11.84□□□□□ -0.51
CIITA-203ENST00000537380 NBPF26B4DH59 902 aa11.84□□□□□ -0.51
CIITA-203ENST00000537380 PROSER3Q2NL68 480 aa11.84□□□□□ -0.51
CIITA-203ENST00000537380 BEND3Q5T5X7 828 aa11.84□□□□□ -0.51
CIITA-203ENST00000537380 NBPF10Q6P3W6 841 aaKnown RBP11.84□□□□□ -0.51
CIITA-203ENST00000537380 ANKRD13DQ6ZTN6 518 aa11.84□□□□□ -0.51
CIITA-203ENST00000537380 COL23A1Q86Y22 540 aaPredicted RBP11.84□□□□□ -0.51
CIITA-203ENST00000537380 NBPF15Q8N660 670 aa11.84□□□□□ -0.51
CIITA-203ENST00000537380 PI4KAP1Q8N8J0 262 aa11.84□□□□□ -0.51
CIITA-203ENST00000537380 LINS1Q8NG48 757 aa11.84□□□□□ -0.51
CIITA-203ENST00000537380 PLBD2Q8NHP8 589 aa11.84□□□□□ -0.51
CIITA-203ENST00000537380 ARXQ96QS3 562 aa11.84□□□□□ -0.51
CIITA-203ENST00000537380 SRCIN1Q9C0H9 1055 aa11.84□□□□□ -0.51
CIITA-203ENST00000537380 F6X3S4 739 aa11.83□□□□□ -0.52
CIITA-203ENST00000537380 COPS6Q7L5N1 327 aa11.83□□□□□ -0.52
CIITA-203ENST00000537380 DNAJC10Q8IXB1 793 aa11.83□□□□□ -0.52
CIITA-203ENST00000537380 RPAP2Q8IXW5 612 aaPredicted RBP11.83□□□□□ -0.52
CIITA-203ENST00000537380 PCDHB15Q9Y5E8 787 aa11.83□□□□□ -0.52
CIITA-203ENST00000537380 UTYO14607 1347 aa11.83□□□□□ -0.52
CIITA-203ENST00000537380 COL15A1P39059 1388 aa11.82□□□□□ -0.52
CIITA-203ENST00000537380 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP11.82□□□□□ -0.52
CIITA-203ENST00000537380 GNPATO15228 680 aa11.82□□□□□ -0.52
CIITA-203ENST00000537380 IL6STP40189 918 aaPredicted RBP11.82□□□□□ -0.52
CIITA-203ENST00000537380 CRKLP46109 303 aaKnown RBP11.82□□□□□ -0.52
CIITA-203ENST00000537380 NEXNQ0ZGT2 675 aa11.82□□□□□ -0.52
CIITA-203ENST00000537380 TRIM28Q13263 835 aaKnown RBP11.82□□□□□ -0.52
CIITA-203ENST00000537380 XAGE3Q8WTP9 111 aa11.82□□□□□ -0.52
CIITA-203ENST00000537380 METTL22Q9BUU2 404 aaPredicted RBP11.82□□□□□ -0.52
CIITA-203ENST00000537380 ERVV-1B6SEH8 477 aa11.81□□□□□ -0.52
CIITA-203ENST00000537380 RPS6KA4O75676 772 aa11.81□□□□□ -0.52
CIITA-203ENST00000537380 A1BGP04217 495 aa11.81□□□□□ -0.52
CIITA-203ENST00000537380 ADRA2BP18089 450 aa11.81□□□□□ -0.52
CIITA-203ENST00000537380 SLC4A10Q6U841 1118 aa11.81□□□□□ -0.52
CIITA-203ENST00000537380 FHDC1Q9C0D6 1143 aaPredicted RBP11.81□□□□□ -0.52
CIITA-203ENST00000537380 USP44Q9H0E7 712 aa11.81□□□□□ -0.52
CIITA-203ENST00000537380 MAP3K2Q9Y2U5 619 aa11.81□□□□□ -0.52
CIITA-203ENST00000537380 ANXA1P04083 346 aa11.8□□□□□ -0.52
CIITA-203ENST00000537380 GNAI2P04899 355 aa11.8□□□□□ -0.52
CIITA-203ENST00000537380 MYL6BP14649 208 aa11.8□□□□□ -0.52
CIITA-203ENST00000537380 GPR162Q16538 588 aa11.8□□□□□ -0.52
CIITA-203ENST00000537380 INTS5Q6P9B9 1019 aaKnown RBP11.8□□□□□ -0.52
CIITA-203ENST00000537380 SMIM5Q71RC9 77 aa11.8□□□□□ -0.52
CIITA-203ENST00000537380 RIC3Q7Z5B4 369 aa11.8□□□□□ -0.52
CIITA-203ENST00000537380 ANKRD44Q8N8A2 993 aa11.8□□□□□ -0.52
CIITA-203ENST00000537380 SYT17Q9BSW7 474 aa11.8□□□□□ -0.52
CIITA-203ENST00000537380 CCDC87Q9NVE4 849 aa11.8□□□□□ -0.52
CIITA-203ENST00000537380 RTCBQ9Y3I0 505 aaKnown RBP11.8□□□□□ -0.52
CIITA-203ENST00000537380 PHF14O94880 888 aa11.79□□□□□ -0.52
CIITA-203ENST00000537380 EIF5P55010 431 aaKnown RBP11.79□□□□□ -0.52
CIITA-203ENST00000537380 SMC5Q8IY18 1101 aa11.79□□□□□ -0.52
CIITA-203ENST00000537380 GCC1Q96CN9 775 aa11.79□□□□□ -0.52
CIITA-203ENST00000537380 MEIS3Q99687 375 aa11.79□□□□□ -0.52
CIITA-203ENST00000537380 ARFGEF2Q9Y6D5 1785 aa11.78□□□□□ -0.52
CIITA-203ENST00000537380 HMMRO75330 724 aa11.78□□□□□ -0.52
CIITA-203ENST00000537380 IGHDP01880 384 aa11.78□□□□□ -0.52
CIITA-203ENST00000537380 HSP90AB3PQ58FF7 597 aa11.78□□□□□ -0.52
CIITA-203ENST00000537380 CCDC191Q8NCU4 936 aa11.78□□□□□ -0.52
CIITA-203ENST00000537380 MAP3K15Q6ZN16 1313 aa11.78□□□□□ -0.52
CIITA-203ENST00000537380 SCN7AQ01118 1682 aa11.78□□□□□ -0.52
CIITA-203ENST00000537380 A0A087WZG4 1122 aa11.77□□□□□ -0.53
Retrieved 100 of 20,778 RNA–protein pairs in 30.6 ms