RNA–Protein interactions for RNA: ENST00000536274.5

MCF2-210, Transcript of MCF.2 cell line derived transforming sequence, humanhuman

APPRIS ALT2 TSL 2 BASIC

Gene MCF2, Length 3,461 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MCF2-210ENST00000536274 ZNF445P59923 1031 aa4.52□□□□□ -1.69
MCF2-210ENST00000536274 PIBF1Q8WXW3 757 aa4.52□□□□□ -1.69
MCF2-210ENST00000536274 ZNF592Q92610 1267 aa4.52□□□□□ -1.69
MCF2-210ENST00000536274 PRIMPOLQ96LW4 560 aa4.52□□□□□ -1.69
MCF2-210ENST00000536274 GEMIN8Q9NWZ8 242 aaKnown RBP4.52□□□□□ -1.69
MCF2-210ENST00000536274 TOPAZ1Q8N9V7 1692 aa4.52□□□□□ -1.69
MCF2-210ENST00000536274 SBNO1A3KN83 1393 aa4.52□□□□□ -1.69
MCF2-210ENST00000536274 BRD4O60885 1362 aaPredicted RBP4.52□□□□□ -1.69
MCF2-210ENST00000536274 STK25O00506 426 aa4.52□□□□□ -1.69
MCF2-210ENST00000536274 WDR43Q15061 677 aaKnown RBP eCLIP4.52□□□□□ -1.69
MCF2-210ENST00000536274 ZGPATQ8N5A5 531 aaKnown RBP4.52□□□□□ -1.69
MCF2-210ENST00000536274 GOLGA6L2Q8N9W4 650 aaPredicted RBP4.52□□□□□ -1.69
MCF2-210ENST00000536274 KIF18AQ8NI77 898 aa4.52□□□□□ -1.69
MCF2-210ENST00000536274 RNF217Q8TC41 542 aa4.52□□□□□ -1.69
MCF2-210ENST00000536274 C16orf45Q96MC5 204 aaPredicted RBP4.52□□□□□ -1.69
MCF2-210ENST00000536274 DDX41Q9UJV9 622 aaKnown RBP4.52□□□□□ -1.69
MCF2-210ENST00000536274 BCL9LQ86UU0 1499 aa4.52□□□□□ -1.69
MCF2-210ENST00000536274 MAPK8IP3Q9UPT6 1336 aa4.52□□□□□ -1.69
MCF2-210ENST00000536274 TRPM1Q7Z4N2 1603 aa4.52□□□□□ -1.69
MCF2-210ENST00000536274 PDE6BP35913 854 aa4.52□□□□□ -1.69
MCF2-210ENST00000536274 PTGER2P43116 358 aa4.52□□□□□ -1.69
MCF2-210ENST00000536274 GABPB1Q06547 395 aaPredicted RBP4.52□□□□□ -1.69
MCF2-210ENST00000536274 SYTL4Q96C24 671 aaPredicted RBP4.52□□□□□ -1.69
MCF2-210ENST00000536274 CALCOCO1Q9P1Z2 691 aa4.52□□□□□ -1.69
MCF2-210ENST00000536274 BRWD3Q6RI45 1802 aa4.51□□□□□ -1.69
MCF2-210ENST00000536274 GOLGA6L22H0YM25 854 aa4.51□□□□□ -1.69
MCF2-210ENST00000536274 SMARCA5O60264 1052 aaPredicted RBP4.51□□□□□ -1.69
MCF2-210ENST00000536274 SEMA3FQ13275 785 aa4.51□□□□□ -1.69
MCF2-210ENST00000536274 FKBP5Q13451 457 aaPredicted RBP4.51□□□□□ -1.69
MCF2-210ENST00000536274 TSGA10IPQ3SY00 556 aa4.51□□□□□ -1.69
MCF2-210ENST00000536274 KMT5BQ4FZB7 885 aa4.51□□□□□ -1.69
MCF2-210ENST00000536274 BRINP3Q76B58 766 aa4.51□□□□□ -1.69
MCF2-210ENST00000536274 NLRP13Q86W25 1043 aa4.51□□□□□ -1.69
MCF2-210ENST00000536274 EGFL6Q8IUX8 553 aa4.51□□□□□ -1.69
MCF2-210ENST00000536274 SMC5Q8IY18 1101 aa4.51□□□□□ -1.69
MCF2-210ENST00000536274 ZC3H15Q8WU90 426 aaKnown RBP4.51□□□□□ -1.69
MCF2-210ENST00000536274 KIF2CQ99661 725 aa4.51□□□□□ -1.69
MCF2-210ENST00000536274 KCNF1Q9H3M0 494 aa4.51□□□□□ -1.69
MCF2-210ENST00000536274 POLKQ9UBT6 870 aa4.51□□□□□ -1.69
MCF2-210ENST00000536274 EXOC6BQ9Y2D4 811 aa4.51□□□□□ -1.69
MCF2-210ENST00000536274 ATP7BP35670 1465 aa4.51□□□□□ -1.69
MCF2-210ENST00000536274 PARP4Q9UKK3 1724 aaKnown RBP4.51□□□□□ -1.69
MCF2-210ENST00000536274 AP5Z1O43299 807 aa4.51□□□□□ -1.69
MCF2-210ENST00000536274 ADCY5O95622 1261 aa4.51□□□□□ -1.69
MCF2-210ENST00000536274 ST5P78524 1137 aa4.51□□□□□ -1.69
MCF2-210ENST00000536274 LRSAM1Q6UWE0 723 aa4.51□□□□□ -1.69
MCF2-210ENST00000536274 SLC24A3Q9HC58 644 aa4.51□□□□□ -1.69
MCF2-210ENST00000536274 ZCCHC17Q9NP64 241 aaKnown RBP4.51□□□□□ -1.69
MCF2-210ENST00000536274 NAIPQ13075 1403 aa4.51□□□□□ -1.69
MCF2-210ENST00000536274 PSDA5PKW4 1024 aaPredicted RBP4.51□□□□□ -1.69
MCF2-210ENST00000536274 ATF3P18847 181 aa4.51□□□□□ -1.69
MCF2-210ENST00000536274 KRBA2Q6ZNG9 492 aa4.51□□□□□ -1.69
MCF2-210ENST00000536274 SMC4Q9NTJ3 1288 aa4.51□□□□□ -1.69
MCF2-210ENST00000536274 APAF1O14727 1248 aa4.5□□□□□ -1.69
MCF2-210ENST00000536274 LRMPQ12912 555 aa4.5□□□□□ -1.69
MCF2-210ENST00000536274 SKIDA1Q1XH10 827 aa4.5□□□□□ -1.69
MCF2-210ENST00000536274 NOL8Q76FK4 1167 aaKnown RBP4.5□□□□□ -1.69
MCF2-210ENST00000536274 FEZ1Q99689 392 aa4.5□□□□□ -1.69
MCF2-210ENST00000536274 ANKRD30BQ9BXX2 1392 aa4.5□□□□□ -1.69
MCF2-210ENST00000536274 PHRF1Q9P1Y6 1649 aaKnown RBP4.5□□□□□ -1.69
MCF2-210ENST00000536274 NUP188Q5SRE5 1749 aa4.5□□□□□ -1.69
MCF2-210ENST00000536274 U2SURPO15042 1029 aaKnown RBP4.5□□□□□ -1.69
MCF2-210ENST00000536274 GADD45BO75293 160 aaPredicted RBP4.5□□□□□ -1.69
MCF2-210ENST00000536274 MCM5P33992 734 aa4.5□□□□□ -1.69
MCF2-210ENST00000536274 SGSM3Q96HU1 749 aa4.5□□□□□ -1.69
MCF2-210ENST00000536274 MYCBPQ99417 103 aaPredicted RBP4.5□□□□□ -1.69
MCF2-210ENST00000536274 RASSF4Q9H2L5 321 aa4.5□□□□□ -1.69
MCF2-210ENST00000536274 TRPC5Q9UL62 973 aaPredicted RBP4.5□□□□□ -1.69
MCF2-210ENST00000536274 RRP7AQ9Y3A4 280 aaKnown RBP4.5□□□□□ -1.69
MCF2-210ENST00000536274 MORC2Q9Y6X9 1032 aaPredicted RBP4.5□□□□□ -1.69
MCF2-210ENST00000536274 ABCC11Q96J66 1382 aa4.5□□□□□ -1.69
MCF2-210ENST00000536274 MYO1CO00159 1063 aa4.49□□□□□ -1.69
MCF2-210ENST00000536274 HCLS1P14317 486 aaPredicted RBP4.49□□□□□ -1.69
MCF2-210ENST00000536274 EMP3P54852 163 aa4.49□□□□□ -1.69
MCF2-210ENST00000536274 ICE2Q659A1 982 aa4.49□□□□□ -1.69
MCF2-210ENST00000536274 MICALL2Q8IY33 904 aa4.49□□□□□ -1.69
MCF2-210ENST00000536274 KRT222Q8N1A0 295 aa4.49□□□□□ -1.69
MCF2-210ENST00000536274 NECTIN2Q92692 538 aa4.49□□□□□ -1.69
MCF2-210ENST00000536274 ZNF622Q969S3 477 aaKnown RBP eCLIP4.49□□□□□ -1.69
MCF2-210ENST00000536274 CARD11Q9BXL7 1154 aa4.49□□□□□ -1.69
MCF2-210ENST00000536274 BCL9O00512 1426 aa4.49□□□□□ -1.69
MCF2-210ENST00000536274 K7ELQ4 463 aaPredicted RBP4.49□□□□□ -1.69
MCF2-210ENST00000536274 ST18O60284 1047 aa4.49□□□□□ -1.69
MCF2-210ENST00000536274 TBC1D12O60347 775 aa4.49□□□□□ -1.69
MCF2-210ENST00000536274 ONECUT3O60422 494 aaPredicted RBP4.49□□□□□ -1.69
MCF2-210ENST00000536274 SLFN5Q08AF3 891 aa4.49□□□□□ -1.69
MCF2-210ENST00000536274 TTLL5Q6EMB2 1281 aa4.49□□□□□ -1.69
MCF2-210ENST00000536274 FBXO38Q6PIJ6 1188 aa4.49□□□□□ -1.69
MCF2-210ENST00000536274 PACS2Q86VP3 889 aa4.49□□□□□ -1.69
MCF2-210ENST00000536274 LRRN4CLQ8ND94 238 aa4.49□□□□□ -1.69
MCF2-210ENST00000536274 TMC2Q8TDI7 906 aa4.49□□□□□ -1.69
MCF2-210ENST00000536274 NOL10Q9BSC4 688 aaKnown RBP4.49□□□□□ -1.69
MCF2-210ENST00000536274 LNPKQ9C0E8 428 aa4.49□□□□□ -1.69
MCF2-210ENST00000536274 ZDHHC9Q9Y397 364 aa4.49□□□□□ -1.69
MCF2-210ENST00000536274 CEP83Q9Y592 693 aa4.49□□□□□ -1.69
MCF2-210ENST00000536274 PIK3C2GO75747 1445 aa4.49□□□□□ -1.69
MCF2-210ENST00000536274 ARHGEF10O15013 1369 aa4.49□□□□□ -1.69
MCF2-210ENST00000536274 AFF2P51816 1311 aa4.49□□□□□ -1.69
MCF2-210ENST00000536274 GOLIM4O00461 696 aa4.49□□□□□ -1.69
MCF2-210ENST00000536274 CTIFO43310 598 aaKnown RBP4.49□□□□□ -1.69
Retrieved 100 of 20,778 RNA–protein pairs in 68 ms