RNA–Protein interactions for RNA: ENST00000534172.1

CSMD3-210, Transcript of CUB and Sushi multiple domains 3, humanhuman

TSL 5

Gene CSMD3, Length 2,486 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CSMD3-210ENST00000534172 SOWAHDA6NJG2 315 aa5.89□□□□□ -1.47
CSMD3-210ENST00000534172 TXLNAP40222 546 aa5.89□□□□□ -1.47
CSMD3-210ENST00000534172 GLYCTKQ8IVS8 523 aa5.89□□□□□ -1.47
CSMD3-210ENST00000534172 TRIM22Q8IYM9 498 aa5.89□□□□□ -1.47
CSMD3-210ENST00000534172 ZIC5Q96T25 663 aa5.89□□□□□ -1.47
CSMD3-210ENST00000534172 GAS2L1Q99501 681 aaPredicted RBP5.89□□□□□ -1.47
CSMD3-210ENST00000534172 ABL1P00519 1130 aa5.89□□□□□ -1.47
CSMD3-210ENST00000534172 EPB42P16452 691 aa5.89□□□□□ -1.47
CSMD3-210ENST00000534172 LAMC2Q13753 1193 aa5.89□□□□□ -1.47
CSMD3-210ENST00000534172 COX20Q5RI15 118 aa5.89□□□□□ -1.47
CSMD3-210ENST00000534172 CCDC155Q8N6L0 562 aa5.89□□□□□ -1.47
CSMD3-210ENST00000534172 PHF24Q9UPV7 400 aa5.89□□□□□ -1.47
CSMD3-210ENST00000534172 A0A1W2PNR3 127 aa5.88□□□□□ -1.47
CSMD3-210ENST00000534172 TGFBR3LH3BV60 316 aa5.88□□□□□ -1.47
CSMD3-210ENST00000534172 PCSK2P16519 638 aa5.88□□□□□ -1.47
CSMD3-210ENST00000534172 NOM1Q5C9Z4 860 aaKnown RBP5.88□□□□□ -1.47
CSMD3-210ENST00000534172 IFT43Q96FT9 208 aa5.88□□□□□ -1.47
CSMD3-210ENST00000534172 ATP4AP20648 1035 aa5.88□□□□□ -1.47
CSMD3-210ENST00000534172 NAA30Q147X3 362 aaPredicted RBP5.88□□□□□ -1.47
CSMD3-210ENST00000534172 SND1Q7KZF4 910 aaKnown RBP eCLIP5.88□□□□□ -1.47
CSMD3-210ENST00000534172 SUSD3Q96L08 255 aa5.88□□□□□ -1.47
CSMD3-210ENST00000534172 NUCKS1Q9H1E3 243 aaKnown RBP5.88□□□□□ -1.47
CSMD3-210ENST00000534172 SEPT3Q9UH03 358 aa5.88□□□□□ -1.47
CSMD3-210ENST00000534172 DGKZQ13574 1117 aa5.87□□□□□ -1.47
CSMD3-210ENST00000534172 RIPOR1Q6ZS17 1223 aa5.87□□□□□ -1.47
CSMD3-210ENST00000534172 CITED4Q96RK1 184 aa5.87□□□□□ -1.47
CSMD3-210ENST00000534172 DNMT3AQ9Y6K1 912 aaPredicted RBP5.87□□□□□ -1.47
CSMD3-210ENST00000534172 SNRPBP14678 240 aaKnown RBP5.87□□□□□ -1.47
CSMD3-210ENST00000534172 C7orf43Q8WVR3 580 aa5.87□□□□□ -1.47
CSMD3-210ENST00000534172 TRERF1Q96PN7 1200 aa5.87□□□□□ -1.47
CSMD3-210ENST00000534172 EFCC1Q9HA90 598 aa5.87□□□□□ -1.47
CSMD3-210ENST00000534172 SENP3-EIF4A1A0A087X0R7 540 aa5.86□□□□□ -1.47
CSMD3-210ENST00000534172 ITGA6P23229 1130 aa5.86□□□□□ -1.47
CSMD3-210ENST00000534172 USP5P45974 858 aa5.86□□□□□ -1.47
CSMD3-210ENST00000534172 SH3PXD2AQ5TCZ1 1133 aa5.86□□□□□ -1.47
CSMD3-210ENST00000534172 ZNF787Q6DD87 383 aa5.86□□□□□ -1.47
CSMD3-210ENST00000534172 SV2AQ7L0J3 742 aa5.86□□□□□ -1.47
CSMD3-210ENST00000534172 NANOS1Q8WY41 292 aaKnown RBP5.86□□□□□ -1.47
CSMD3-210ENST00000534172 CFHR5Q9BXR6 569 aa5.86□□□□□ -1.47
CSMD3-210ENST00000534172 PCDHGC4Q9Y5F7 938 aa5.86□□□□□ -1.47
CSMD3-210ENST00000534172 H3BRB1 525 aa5.86□□□□□ -1.47
CSMD3-210ENST00000534172 ERCC3P19447 782 aa5.86□□□□□ -1.47
CSMD3-210ENST00000534172 TMCO4Q5TGY1 634 aa5.86□□□□□ -1.47
CSMD3-210ENST00000534172 TTC16Q8NEE8 873 aa5.86□□□□□ -1.47
CSMD3-210ENST00000534172 SLC16A10Q8TF71 515 aa5.86□□□□□ -1.47
CSMD3-210ENST00000534172 GZF1Q9H116 711 aaPredicted RBP5.86□□□□□ -1.47
CSMD3-210ENST00000534172 TUT1Q9H6E5 874 aaKnown RBP5.86□□□□□ -1.47
CSMD3-210ENST00000534172 TNFRSF10BO14763 440 aa5.85□□□□□ -1.47
CSMD3-210ENST00000534172 MICAL2O94851 1124 aa5.85□□□□□ -1.47
CSMD3-210ENST00000534172 FAM157BP0CG42 384 aa5.85□□□□□ -1.47
CSMD3-210ENST00000534172 SERPINB4P48594 390 aa5.85□□□□□ -1.47
CSMD3-210ENST00000534172 ARSDP51689 593 aa5.85□□□□□ -1.47
CSMD3-210ENST00000534172 RGS22Q8NE09 1264 aa5.85□□□□□ -1.47
CSMD3-210ENST00000534172 PIK3R5Q8WYR1 880 aa5.85□□□□□ -1.47
CSMD3-210ENST00000534172 GPAMQ9HCL2 828 aa5.85□□□□□ -1.47
CSMD3-210ENST00000534172 FNDC3AQ9Y2H6 1198 aaKnown RBP5.85□□□□□ -1.47
CSMD3-210ENST00000534172 ATXN7O15265 892 aaPredicted RBP5.85□□□□□ -1.47
CSMD3-210ENST00000534172 NDUFB5O43674 189 aa5.85□□□□□ -1.47
CSMD3-210ENST00000534172 PPFIA3O75145 1194 aa5.85□□□□□ -1.47
CSMD3-210ENST00000534172 SAP130Q9H0E3 1048 aa5.85□□□□□ -1.47
CSMD3-210ENST00000534172 RUBCNLQ9H714 662 aa5.85□□□□□ -1.47
CSMD3-210ENST00000534172 NXF1Q9UBU9 619 aaKnown RBP5.85□□□□□ -1.47
CSMD3-210ENST00000534172 BIN2Q9UBW5 565 aaPredicted RBP5.85□□□□□ -1.47
CSMD3-210ENST00000534172 NEFLP07196 543 aa5.84□□□□□ -1.47
CSMD3-210ENST00000534172 LRRC69Q6ZNQ3 347 aa5.84□□□□□ -1.47
CSMD3-210ENST00000534172 LRFN2Q9ULH4 789 aa5.84□□□□□ -1.47
CSMD3-210ENST00000534172 SOBPA7XYQ1 873 aa5.84□□□□□ -1.48
CSMD3-210ENST00000534172 EHHADHQ08426 723 aa5.84□□□□□ -1.48
CSMD3-210ENST00000534172 BTLAQ7Z6A9 289 aa5.84□□□□□ -1.48
CSMD3-210ENST00000534172 TREML1Q86YW5 311 aa5.84□□□□□ -1.48
CSMD3-210ENST00000534172 KLK14Q9P0G3 267 aa5.84□□□□□ -1.48
CSMD3-210ENST00000534172 BRPF3Q9ULD4 1205 aa5.84□□□□□ -1.48
CSMD3-210ENST00000534172 ATXN7L1Q9ULK2 861 aaPredicted RBP5.84□□□□□ -1.48
CSMD3-210ENST00000534172 NSFL1CQ9UNZ2 370 aaKnown RBP5.84□□□□□ -1.48
CSMD3-210ENST00000534172 MZF1P28698 734 aaPredicted RBP5.83□□□□□ -1.48
CSMD3-210ENST00000534172 KCNQ4P56696 695 aa5.83□□□□□ -1.48
CSMD3-210ENST00000534172 PDE3BQ13370 1112 aa5.83□□□□□ -1.48
CSMD3-210ENST00000534172 ZNF211Q13398 564 aaPredicted RBP5.83□□□□□ -1.48
CSMD3-210ENST00000534172 AAMPQ13685 434 aa5.83□□□□□ -1.48
CSMD3-210ENST00000534172 CEP63Q96MT8 703 aa5.83□□□□□ -1.48
CSMD3-210ENST00000534172 ZCCHC2Q9C0B9 1178 aaKnown RBP5.83□□□□□ -1.48
CSMD3-210ENST00000534172 MFAP1P55081 439 aaKnown RBP5.83□□□□□ -1.48
CSMD3-210ENST00000534172 NEUROD1Q13562 356 aa5.83□□□□□ -1.48
CSMD3-210ENST00000534172 CAPN12Q6ZSI9 719 aa5.83□□□□□ -1.48
CSMD3-210ENST00000534172 ZSCAN29Q8IWY8 852 aaPredicted RBP5.83□□□□□ -1.48
CSMD3-210ENST00000534172 DCTN4Q9UJW0 460 aa5.83□□□□□ -1.48
CSMD3-210ENST00000534172 LCE2BO14633 110 aa5.82□□□□□ -1.48
CSMD3-210ENST00000534172 MPSTP25325 297 aa5.82□□□□□ -1.48
CSMD3-210ENST00000534172 ZAP70P43403 619 aa5.82□□□□□ -1.48
CSMD3-210ENST00000534172 EIF1AXP47813 144 aaKnown RBP5.82□□□□□ -1.48
CSMD3-210ENST00000534172 IDH3AP50213 366 aa5.82□□□□□ -1.48
CSMD3-210ENST00000534172 KCNH4Q9UQ05 1017 aa5.82□□□□□ -1.48
CSMD3-210ENST00000534172 DBN1Q16643 649 aa5.82□□□□□ -1.48
CSMD3-210ENST00000534172 CCDC27Q2M243 656 aa5.82□□□□□ -1.48
CSMD3-210ENST00000534172 FAM182BQ5T319 152 aa5.82□□□□□ -1.48
CSMD3-210ENST00000534172 ZNF837Q96EG3 531 aaPredicted RBP5.82□□□□□ -1.48
CSMD3-210ENST00000534172 DMGDHQ9UI17 866 aaKnown RBP5.82□□□□□ -1.48
CSMD3-210ENST00000534172 FGD1P98174 961 aa5.81□□□□□ -1.48
CSMD3-210ENST00000534172 H3BM21 787 aa5.81□□□□□ -1.48
CSMD3-210ENST00000534172 INPP5BP32019 993 aa5.81□□□□□ -1.48
Retrieved 100 of 20,778 RNA–protein pairs in 14.5 ms