RNA–Protein interactions for RNA: ENST00000533806.5

VPS28-216, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 3

Gene VPS28, Length 650 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-216ENST00000533806 NRXN2Q9P2S2 1712 aa16.86■□□□□ 0.29
VPS28-216ENST00000533806 MAP3K15Q6ZN16 1313 aa16.86■□□□□ 0.29
VPS28-216ENST00000533806 BCORQ6W2J9 1755 aa16.85■□□□□ 0.29
VPS28-216ENST00000533806 ANXA1P04083 346 aa16.85■□□□□ 0.29
VPS28-216ENST00000533806 HDGFL1Q5TGJ6 251 aa16.85■□□□□ 0.29
VPS28-216ENST00000533806 TSPYL6Q8N831 410 aa16.85■□□□□ 0.29
VPS28-216ENST00000533806 NECTIN2Q92692 538 aa16.85■□□□□ 0.29
VPS28-216ENST00000533806 SPINK5Q9NQ38 1064 aaPredicted RBP16.85■□□□□ 0.29
VPS28-216ENST00000533806 SALL2Q9Y467 1007 aaPredicted RBP16.85■□□□□ 0.29
VPS28-216ENST00000533806 CARMIL3Q8ND23 1372 aa16.85■□□□□ 0.29
VPS28-216ENST00000533806 KIAA1551Q9HCM1 1747 aa16.84■□□□□ 0.29
VPS28-216ENST00000533806 A0A0G2JLW4 131 aa16.84■□□□□ 0.29
VPS28-216ENST00000533806 YBX3P16989 372 aaKnown RBP eCLIP16.84■□□□□ 0.291e-7■□□□□ 9.8
VPS28-216ENST00000533806 SETDB2Q96T68 719 aa16.84■□□□□ 0.29
VPS28-216ENST00000533806 CHPF2Q9P2E5 772 aa16.84■□□□□ 0.29
VPS28-216ENST00000533806 ZNF652Q9Y2D9 606 aa16.84■□□□□ 0.29
VPS28-216ENST00000533806 ELL2O00472 640 aaPredicted RBP16.83■□□□□ 0.28
VPS28-216ENST00000533806 DPEP1P16444 411 aa16.83■□□□□ 0.28
VPS28-216ENST00000533806 PRR5LQ6MZQ0 368 aa16.83■□□□□ 0.28
VPS28-216ENST00000533806 COPS6Q7L5N1 327 aa16.83■□□□□ 0.28
VPS28-216ENST00000533806 DBF4Q9UBU7 674 aaPredicted RBP16.83■□□□□ 0.28
VPS28-216ENST00000533806 ATP10DQ9P241 1426 aa16.82■□□□□ 0.28
VPS28-216ENST00000533806 FANCIQ9NVI1 1328 aa16.82■□□□□ 0.28
VPS28-216ENST00000533806 GIGYF2Q6Y7W6 1299 aaKnown RBP16.82■□□□□ 0.28
VPS28-216ENST00000533806 DCAF8L1A6NGE4 600 aa16.81■□□□□ 0.28
VPS28-216ENST00000533806 GPR162Q16538 588 aa16.81■□□□□ 0.28
VPS28-216ENST00000533806 KIF6Q6ZMV9 814 aa16.81■□□□□ 0.28
VPS28-216ENST00000533806 ZNF34Q8IZ26 560 aa16.81■□□□□ 0.28
VPS28-216ENST00000533806 XAGE3Q8WTP9 111 aa16.81■□□□□ 0.28
VPS28-216ENST00000533806 BRIP1Q9BX63 1249 aa16.81■□□□□ 0.28
VPS28-216ENST00000533806 ZBTB3Q9H5J0 574 aa16.81■□□□□ 0.28
VPS28-216ENST00000533806 NIP7Q9Y221 180 aaKnown RBP eCLIP16.81■□□□□ 0.28
VPS28-216ENST00000533806 AFDNP55196 1824 aaKnown RBP16.8■□□□□ 0.28
VPS28-216ENST00000533806 HYPKQ9NX55 129 aa16.8■□□□□ 0.28
VPS28-216ENST00000533806 UBN2Q6ZU65 1347 aa16.79■□□□□ 0.28
VPS28-216ENST00000533806 CHRNA5P30532 468 aa16.79■□□□□ 0.28
VPS28-216ENST00000533806 KLRG2A4D1S0 409 aaPredicted RBP16.78■□□□□ 0.28
VPS28-216ENST00000533806 GRIN3BO60391 1043 aa16.78■□□□□ 0.28
VPS28-216ENST00000533806 TWISTNBQ3B726 338 aaPredicted RBP16.78■□□□□ 0.28
VPS28-216ENST00000533806 CNBD1Q8NA66 436 aa16.78■□□□□ 0.28
VPS28-216ENST00000533806 CHMP4AQ9BY43 222 aa16.78■□□□□ 0.28
VPS28-216ENST00000533806 VAMP4O75379 141 aa16.77■□□□□ 0.28
VPS28-216ENST00000533806 GOLGA2Q08379 1002 aa16.77■□□□□ 0.28
VPS28-216ENST00000533806 AIMP1Q12904 312 aaKnown RBP16.77■□□□□ 0.28
VPS28-216ENST00000533806 CCDC30Q5VVM6 783 aa16.77■□□□□ 0.28
VPS28-216ENST00000533806 TPTE2Q6XPS3 522 aa16.77■□□□□ 0.28
VPS28-216ENST00000533806 NBPF5PQ86XG9 351 aaPredicted RBP16.77■□□□□ 0.28
VPS28-216ENST00000533806 CCDC24Q8N4L8 307 aa16.77■□□□□ 0.28
VPS28-216ENST00000533806 PLBD2Q8NHP8 589 aa16.77■□□□□ 0.28
VPS28-216ENST00000533806 EXOSC9Q06265 439 aaKnown RBP16.76■□□□□ 0.27
VPS28-216ENST00000533806 ANKRD13DQ6ZTN6 518 aa16.76■□□□□ 0.27
VPS28-216ENST00000533806 PELP1Q8IZL8 1130 aaKnown RBP16.76■□□□□ 0.27
VPS28-216ENST00000533806 MYH16Q9H6N6 1097 aa16.76■□□□□ 0.27
VPS28-216ENST00000533806 PHAXQ9H814 394 aaKnown RBP16.76■□□□□ 0.27
VPS28-216ENST00000533806 PIM2Q9P1W9 311 aa16.76■□□□□ 0.27
VPS28-216ENST00000533806 IBTKQ9P2D0 1353 aaPredicted RBP16.76■□□□□ 0.27
VPS28-216ENST00000533806 N4BP2Q86UW6 1770 aaPredicted RBP16.75■□□□□ 0.27
VPS28-216ENST00000533806 GPTP24298 496 aa16.75■□□□□ 0.27
VPS28-216ENST00000533806 PDE6BP35913 854 aa16.75■□□□□ 0.27
VPS28-216ENST00000533806 TCIRG1Q13488 830 aa16.75■□□□□ 0.27
VPS28-216ENST00000533806 SUSD4Q5VX71 490 aa16.75■□□□□ 0.27
VPS28-216ENST00000533806 WWC3Q9ULE0 1092 aa16.75■□□□□ 0.27
VPS28-216ENST00000533806 PDZRN3Q9UPQ7 1066 aa16.75■□□□□ 0.27
VPS28-216ENST00000533806 NTSR2O95665 410 aa16.74■□□□□ 0.27
VPS28-216ENST00000533806 PARP10Q53GL7 1025 aa16.74■□□□□ 0.27
VPS28-216ENST00000533806 C2CD5Q86YS7 1000 aa16.74■□□□□ 0.27
VPS28-216ENST00000533806 NUP98P52948 1817 aa16.74■□□□□ 0.27
VPS28-216ENST00000533806 ANKRD31Q8N7Z5 1873 aa16.73■□□□□ 0.27
VPS28-216ENST00000533806 H0YIN7 160 aa16.73■□□□□ 0.27
VPS28-216ENST00000533806 SRGNP10124 158 aa16.73■□□□□ 0.27
VPS28-216ENST00000533806 ST5P78524 1137 aa16.73■□□□□ 0.27
VPS28-216ENST00000533806 SLFN5Q08AF3 891 aa16.73■□□□□ 0.27
VPS28-216ENST00000533806 HSP90AB3PQ58FF7 597 aa16.73■□□□□ 0.27
VPS28-216ENST00000533806 DALRD3Q5D0E6 543 aaKnown RBP16.73■□□□□ 0.27
VPS28-216ENST00000533806 NLRP10Q86W26 655 aa16.73■□□□□ 0.27
VPS28-216ENST00000533806 TRMT2AQ8IZ69 625 aaKnown RBP16.73■□□□□ 0.27
VPS28-216ENST00000533806 ISCA1Q9BUE6 129 aa16.73■□□□□ 0.27
VPS28-216ENST00000533806 NYXQ9GZU5 481 aa16.73■□□□□ 0.27
VPS28-216ENST00000533806 BCS1LQ9Y276 419 aa16.73■□□□□ 0.27
VPS28-216ENST00000533806 BRCA1P38398 1863 aaKnown RBP16.73■□□□□ 0.27
VPS28-216ENST00000533806 RIC1Q4ADV7 1423 aa16.72■□□□□ 0.27
VPS28-216ENST00000533806 FAM177BA6PVY3 158 aa16.72■□□□□ 0.27
VPS28-216ENST00000533806 TRIM28Q13263 835 aaKnown RBP16.72■□□□□ 0.27
VPS28-216ENST00000533806 ERFEQ4G0M1 354 aa16.72■□□□□ 0.27
VPS28-216ENST00000533806 E9PSI1 815 aa16.71■□□□□ 0.27
VPS28-216ENST00000533806 TCERG1O14776 1098 aaKnown RBP16.71■□□□□ 0.27
VPS28-216ENST00000533806 SLC4A2P04920 1241 aa16.71■□□□□ 0.27
VPS28-216ENST00000533806 CRY2Q49AN0 593 aa16.71■□□□□ 0.27
VPS28-216ENST00000533806 SLC10A5Q5PT55 438 aa16.71■□□□□ 0.27
VPS28-216ENST00000533806 G2E3Q7L622 706 aa16.71■□□□□ 0.27
VPS28-216ENST00000533806 NUTM1Q86Y26 1132 aa16.71■□□□□ 0.27
VPS28-216ENST00000533806 ABCC12Q96J65 1359 aa16.71■□□□□ 0.27
VPS28-216ENST00000533806 STYK1Q6J9G0 422 aa16.7■□□□□ 0.26
VPS28-216ENST00000533806 PPP1R42Q7Z4L9 355 aa16.7■□□□□ 0.26
VPS28-216ENST00000533806 TTLL6Q8N841 843 aa16.7■□□□□ 0.26
VPS28-216ENST00000533806 CDCA7LQ96GN5 454 aa16.7■□□□□ 0.26
VPS28-216ENST00000533806 UTP14AQ9BVJ6 771 aaKnown RBP16.7■□□□□ 0.26
VPS28-216ENST00000533806 RNF123Q5XPI4 1314 aa16.7■□□□□ 0.26
VPS28-216ENST00000533806 NPHP1O15259 732 aa16.69■□□□□ 0.26
VPS28-216ENST00000533806 STK31Q9BXU1 1019 aa16.69■□□□□ 0.26
Retrieved 100 of 20,778 RNA–protein pairs in 8.3 ms