RNA–Protein interactions for RNA: ENST00000531118.5

CD44-232, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 2

Gene CD44, Length 877 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-232ENST00000531118 IFNL1Q8IU54 200 aa11.5□□□□□ -0.57
CD44-232ENST00000531118 MS4A3Q96HJ5 214 aa11.5□□□□□ -0.57
CD44-232ENST00000531118 SLX4Q8IY92 1834 aa11.5□□□□□ -0.57
CD44-232ENST00000531118 WASHC2AQ641Q2 1341 aa11.5□□□□□ -0.57
CD44-232ENST00000531118 COL15A1P39059 1388 aa11.5□□□□□ -0.57
CD44-232ENST00000531118 CCDC85CA6NKD9 419 aa11.49□□□□□ -0.57
CD44-232ENST00000531118 TMEM88BA6NKF7 163 aa11.49□□□□□ -0.57
CD44-232ENST00000531118 PTCD1O75127 700 aaKnown RBP11.49□□□□□ -0.57
CD44-232ENST00000531118 NFIXQ14938 502 aa11.49□□□□□ -0.57
CD44-232ENST00000531118 ERFEQ4G0M1 354 aa11.49□□□□□ -0.57
CD44-232ENST00000531118 LDHDQ86WU2 507 aa11.49□□□□□ -0.57
CD44-232ENST00000531118 C2CD5Q86YS7 1000 aa11.49□□□□□ -0.57
CD44-232ENST00000531118 SP7Q8TDD2 431 aaPredicted RBP11.49□□□□□ -0.57
CD44-232ENST00000531118 SOS1Q07889 1333 aaPredicted RBP11.49□□□□□ -0.57
CD44-232ENST00000531118 TRPM7Q96QT4 1865 aa11.49□□□□□ -0.57
CD44-232ENST00000531118 RASSF10A6NK89 507 aa11.48□□□□□ -0.57
CD44-232ENST00000531118 PPM1GO15355 546 aaPredicted RBP11.48□□□□□ -0.57
CD44-232ENST00000531118 DDNO94850 711 aaPredicted RBP11.48□□□□□ -0.57
CD44-232ENST00000531118 HSP90AB1P08238 724 aaKnown RBP11.48□□□□□ -0.57
CD44-232ENST00000531118 PDAP1Q13442 181 aaKnown RBP11.48□□□□□ -0.57
CD44-232ENST00000531118 PCDHB8Q9UN66 801 aa11.48□□□□□ -0.57
CD44-232ENST00000531118 LTBP3Q9NS15 1303 aa11.48□□□□□ -0.57
CD44-232ENST00000531118 MRC1P22897 1456 aa11.48□□□□□ -0.57
CD44-232ENST00000531118 UBR2Q8IWV8 1755 aa11.48□□□□□ -0.57
CD44-232ENST00000531118 ST20-MTHFSA0A0A6YYL1 179 aa11.47□□□□□ -0.57
CD44-232ENST00000531118 IQCA1LA6NCM1 817 aa11.47□□□□□ -0.57
CD44-232ENST00000531118 ZPR1O75312 459 aa11.47□□□□□ -0.57
CD44-232ENST00000531118 INTS5Q6P9B9 1019 aaKnown RBP11.47□□□□□ -0.57
CD44-232ENST00000531118 TAOK3Q9H2K8 898 aa11.47□□□□□ -0.57
CD44-232ENST00000531118 BCORQ6W2J9 1755 aa11.46□□□□□ -0.57
CD44-232ENST00000531118 SERPINB2P05120 415 aa11.46□□□□□ -0.57
CD44-232ENST00000531118 CABP4P57796 275 aa11.46□□□□□ -0.57
CD44-232ENST00000531118 MAP2K1Q02750 393 aaPredicted RBP11.46□□□□□ -0.57
CD44-232ENST00000531118 ZNF530Q6P9A1 599 aaPredicted RBP11.46□□□□□ -0.57
CD44-232ENST00000531118 L3MBTL3Q96JM7 780 aaPredicted RBP11.46□□□□□ -0.57
CD44-232ENST00000531118 TAF1DQ9H5J8 278 aaPredicted RBP11.46□□□□□ -0.57
CD44-232ENST00000531118 CASP8AP2Q9UKL3 1982 aa11.46□□□□□ -0.58
CD44-232ENST00000531118 TNRC18O15417 2968 aaPredicted RBP11.46□□□□□ -0.58
CD44-232ENST00000531118 WDR33Q9C0J8 1336 aaKnown RBP11.45□□□□□ -0.58
CD44-232ENST00000531118 H0YIN7 160 aa11.45□□□□□ -0.58
CD44-232ENST00000531118 C21orf2O43822 256 aa11.45□□□□□ -0.58
CD44-232ENST00000531118 GABBR2O75899 941 aa11.45□□□□□ -0.58
CD44-232ENST00000531118 ITGBL1O95965 494 aaPredicted RBP11.45□□□□□ -0.58
CD44-232ENST00000531118 EIF4A2Q14240 407 aaKnown RBP11.45□□□□□ -0.58
CD44-232ENST00000531118 BCL2L12Q9HB09 334 aa11.45□□□□□ -0.58
CD44-232ENST00000531118 NARFQ9UHQ1 456 aa11.45□□□□□ -0.58
CD44-232ENST00000531118 GALR2O43603 387 aaPredicted RBP11.44□□□□□ -0.58
CD44-232ENST00000531118 DNAJC10Q8IXB1 793 aa11.44□□□□□ -0.58
CD44-232ENST00000531118 ZNF541Q9H0D2 1346 aa11.43□□□□□ -0.58
CD44-232ENST00000531118 SLC24A1O60721 1099 aa11.43□□□□□ -0.58
CD44-232ENST00000531118 DEFB115Q30KQ5 88 aa11.43□□□□□ -0.58
CD44-232ENST00000531118 EAPPQ56P03 285 aaPredicted RBP11.43□□□□□ -0.58
CD44-232ENST00000531118 ZBTB1Q9Y2K1 713 aa11.43□□□□□ -0.58
CD44-232ENST00000531118 PSEN1P49768 467 aa11.42□□□□□ -0.58
CD44-232ENST00000531118 ZNF622Q969S3 477 aaKnown RBP eCLIP11.42□□□□□ -0.58
CD44-232ENST00000531118 CFAP44Q96MT7 982 aa11.42□□□□□ -0.58
CD44-232ENST00000531118 ABT1Q9ULW3 272 aaKnown RBP11.42□□□□□ -0.58
CD44-232ENST00000531118 TIE1P35590 1138 aa11.41□□□□□ -0.58
CD44-232ENST00000531118 PLEKHO1Q53GL0 409 aaPredicted RBP11.41□□□□□ -0.58
CD44-232ENST00000531118 CARD14Q9BXL6 1004 aa11.41□□□□□ -0.58
CD44-232ENST00000531118 POLKQ9UBT6 870 aa11.41□□□□□ -0.58
CD44-232ENST00000531118 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP11.4□□□□□ -0.58
CD44-232ENST00000531118 CYP19A1P11511 503 aaPredicted RBP11.4□□□□□ -0.58
CD44-232ENST00000531118 MTHFSP49914 203 aa11.4□□□□□ -0.58
CD44-232ENST00000531118 AMOTQ4VCS5 1084 aa11.4□□□□□ -0.58
CD44-232ENST00000531118 C1orf141Q5JVX7 400 aa11.4□□□□□ -0.58
CD44-232ENST00000531118 MAP1SQ66K74 1059 aaPredicted RBP11.4□□□□□ -0.58
CD44-232ENST00000531118 NFATC2IPQ8NCF5 419 aa11.4□□□□□ -0.58
CD44-232ENST00000531118 ZFP91Q96JP5 570 aaPredicted RBP11.4□□□□□ -0.58
CD44-232ENST00000531118 MCOLN1Q9GZU1 580 aa11.4□□□□□ -0.58
CD44-232ENST00000531118 HACL1Q9UJ83 578 aa11.4□□□□□ -0.58
CD44-232ENST00000531118 PDZRN3Q9UPQ7 1066 aa11.4□□□□□ -0.58
CD44-232ENST00000531118 RNF123Q5XPI4 1314 aa11.39□□□□□ -0.59
CD44-232ENST00000531118 EPHX2P34913 555 aa11.39□□□□□ -0.59
CD44-232ENST00000531118 PDE6BP35913 854 aa11.39□□□□□ -0.59
CD44-232ENST00000531118 SOGA3Q5TF21 947 aa11.39□□□□□ -0.59
CD44-232ENST00000531118 PRR5LQ6MZQ0 368 aa11.39□□□□□ -0.59
CD44-232ENST00000531118 PRPF40BQ6NWY9 871 aaKnown RBP11.39□□□□□ -0.59
CD44-232ENST00000531118 BICDL1Q6ZP65 573 aa11.39□□□□□ -0.59
CD44-232ENST00000531118 PAXIP1Q6ZW49 1069 aaPredicted RBP11.39□□□□□ -0.59
CD44-232ENST00000531118 HS6ST3Q8IZP7 471 aa11.39□□□□□ -0.59
CD44-232ENST00000531118 CAPNS2Q96L46 248 aa11.39□□□□□ -0.59
CD44-232ENST00000531118 BEGAINQ9BUH8 593 aa11.39□□□□□ -0.59
CD44-232ENST00000531118 TSKSQ9UJT2 592 aa11.39□□□□□ -0.59
CD44-232ENST00000531118 CNTROBQ8N137 903 aa11.38□□□□□ -0.59
CD44-232ENST00000531118 BRIP1Q9BX63 1249 aa11.38□□□□□ -0.59
CD44-232ENST00000531118 STK25O00506 426 aa11.37□□□□□ -0.59
CD44-232ENST00000531118 ECE1P42892 770 aa11.37□□□□□ -0.59
CD44-232ENST00000531118 GRM1Q13255 1194 aa11.37□□□□□ -0.59
CD44-232ENST00000531118 TBC1D9BQ66K14 1250 aa11.37□□□□□ -0.59
CD44-232ENST00000531118 CYP4F22Q6NT55 531 aa11.37□□□□□ -0.59
CD44-232ENST00000531118 AEBP1Q8IUX7 1158 aa11.37□□□□□ -0.59
CD44-232ENST00000531118 CCDC24Q8N4L8 307 aa11.37□□□□□ -0.59
CD44-232ENST00000531118 CNKSR1Q969H4 720 aa11.37□□□□□ -0.59
CD44-232ENST00000531118 DDX21Q9NR30 783 aaKnown RBP eCLIP11.37□□□□□ -0.59
CD44-232ENST00000531118 CCDC93Q567U6 631 aa11.36□□□□□ -0.59
CD44-232ENST00000531118 STYK1Q6J9G0 422 aa11.36□□□□□ -0.59
CD44-232ENST00000531118 PNMA8AQ86V59 439 aaPredicted RBP11.36□□□□□ -0.59
CD44-232ENST00000531118 SLC52A2Q9HAB3 445 aa11.36□□□□□ -0.59
CD44-232ENST00000531118 SIPA1L3O60292 1781 aaPredicted RBP11.36□□□□□ -0.59
Retrieved 100 of 20,778 RNA–protein pairs in 11.6 ms