RNA–Protein interactions for RNA: ENST00000527720.5

USH1C-207, Transcript of USH1 protein network component harmonin, humanhuman

TSL 1 (best) BASIC

Gene USH1C, Length 2,278 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USH1C-207ENST00000527720 NEXNQ0ZGT2 675 aa18.65■□□□□ 0.58
USH1C-207ENST00000527720 MRE11P49959 708 aa18.65■□□□□ 0.58
USH1C-207ENST00000527720 SLC39A6Q13433 755 aa18.65■□□□□ 0.58
USH1C-207ENST00000527720 PALD1Q9ULE6 856 aa18.65■□□□□ 0.58
USH1C-207ENST00000527720 SNRPA1P09661 255 aaKnown RBP18.64■□□□□ 0.57
USH1C-207ENST00000527720 CUL4AQ13619 759 aa18.64■□□□□ 0.57
USH1C-207ENST00000527720 RIC3Q7Z5B4 369 aa18.64■□□□□ 0.57
USH1C-207ENST00000527720 TMX3Q96JJ7 454 aa18.64■□□□□ 0.57
USH1C-207ENST00000527720 RAD50Q92878 1312 aa18.64■□□□□ 0.57
USH1C-207ENST00000527720 ARFGEF2Q9Y6D5 1785 aa18.63■□□□□ 0.57
USH1C-207ENST00000527720 TTC5Q8N0Z6 440 aa18.63■□□□□ 0.57
USH1C-207ENST00000527720 INTS4Q96HW7 963 aaKnown RBP18.63■□□□□ 0.57
USH1C-207ENST00000527720 ECHDC1Q9NTX5 307 aa18.63■□□□□ 0.57
USH1C-207ENST00000527720 SUCLG2Q96I99 432 aa18.63■□□□□ 0.57
USH1C-207ENST00000527720 IGKV5-2P06315 115 aa18.62■□□□□ 0.57
USH1C-207ENST00000527720 XRCC6P12956 609 aaKnown RBP eCLIP18.62■□□□□ 0.57
USH1C-207ENST00000527720 AIMP1Q12904 312 aaKnown RBP18.62■□□□□ 0.57
USH1C-207ENST00000527720 ZGPATQ8N5A5 531 aaKnown RBP18.62■□□□□ 0.57
USH1C-207ENST00000527720 CABLES1Q8TDN4 633 aa18.62■□□□□ 0.57
USH1C-207ENST00000527720 KAZALD1Q96I82 304 aa18.62■□□□□ 0.57
USH1C-207ENST00000527720 FMNL2Q96PY5 1086 aa18.62■□□□□ 0.57
USH1C-207ENST00000527720 CYP27B1O15528 508 aa18.62■□□□□ 0.57
USH1C-207ENST00000527720 KLHL40Q2TBA0 621 aa18.62■□□□□ 0.57
USH1C-207ENST00000527720 RUFY2Q8WXA3 655 aa18.62■□□□□ 0.57
USH1C-207ENST00000527720 ZNF496Q96IT1 587 aaPredicted RBP18.62■□□□□ 0.57
USH1C-207ENST00000527720 METTL22Q9BUU2 404 aaPredicted RBP18.62■□□□□ 0.57
USH1C-207ENST00000527720 NEURL1BA8MQ27 555 aa18.61■□□□□ 0.57
USH1C-207ENST00000527720 IFIT2P09913 472 aaKnown RBP18.61■□□□□ 0.57
USH1C-207ENST00000527720 BICC1Q9H694 974 aaKnown RBP18.61■□□□□ 0.57
USH1C-207ENST00000527720 GLI3P10071 1580 aa18.61■□□□□ 0.57
USH1C-207ENST00000527720 MAP4K4O95819 1239 aaPredicted RBP18.61■□□□□ 0.57
USH1C-207ENST00000527720 CHRNA2Q15822 529 aa18.61■□□□□ 0.57
USH1C-207ENST00000527720 IL25Q9H293 177 aa18.61■□□□□ 0.57
USH1C-207ENST00000527720 COL15A1P39059 1388 aa18.6■□□□□ 0.57
USH1C-207ENST00000527720 UBR2Q8IWV8 1755 aa18.6■□□□□ 0.57
USH1C-207ENST00000527720 G3BP1Q13283 466 aaKnown RBP eCLIP18.6■□□□□ 0.57
USH1C-207ENST00000527720 XAGE3Q8WTP9 111 aa18.6■□□□□ 0.57
USH1C-207ENST00000527720 LSG1Q9H089 658 aaKnown RBP18.6■□□□□ 0.57
USH1C-207ENST00000527720 GCKRQ14397 625 aa18.6■□□□□ 0.57
USH1C-207ENST00000527720 KIAA1211Q6ZU35 1233 aa18.6■□□□□ 0.57
USH1C-207ENST00000527720 COPS6Q7L5N1 327 aa18.6■□□□□ 0.57
USH1C-207ENST00000527720 LRP10Q7Z4F1 713 aa18.6■□□□□ 0.57
USH1C-207ENST00000527720 PA2G4Q9UQ80 394 aaKnown RBP18.6■□□□□ 0.57
USH1C-207ENST00000527720 MYL6BP14649 208 aa18.59■□□□□ 0.57
USH1C-207ENST00000527720 EVI5LQ96CN4 794 aa18.59■□□□□ 0.57
USH1C-207ENST00000527720 ANKRD13DQ6ZTN6 518 aa18.58■□□□□ 0.57
USH1C-207ENST00000527720 DIAPH3Q9NSV4 1193 aa18.58■□□□□ 0.57
USH1C-207ENST00000527720 CABP4P57796 275 aa18.58■□□□□ 0.56
USH1C-207ENST00000527720 PKP1Q13835 747 aa18.58■□□□□ 0.56
USH1C-207ENST00000527720 ERBB4Q15303 1308 aa18.58■□□□□ 0.56
USH1C-207ENST00000527720 GRPEL1Q9HAV7 217 aa18.58■□□□□ 0.56
USH1C-207ENST00000527720 SASH1O94885 1247 aa18.57■□□□□ 0.56
USH1C-207ENST00000527720 AACSQ86V21 672 aa18.57■□□□□ 0.56
USH1C-207ENST00000527720 ZDHHC9Q9Y397 364 aa18.57■□□□□ 0.56
USH1C-207ENST00000527720 DDX49Q9Y6V7 483 aaKnown RBP18.57■□□□□ 0.56
USH1C-207ENST00000527720 ABCA3Q99758 1704 aa18.57■□□□□ 0.56
USH1C-207ENST00000527720 WDR17Q8IZU2 1322 aa18.57■□□□□ 0.56
USH1C-207ENST00000527720 HIP1O00291 1037 aa18.57■□□□□ 0.56
USH1C-207ENST00000527720 MCTP1Q6DN14 999 aa18.57■□□□□ 0.56
USH1C-207ENST00000527720 BRINP3Q76B58 766 aa18.57■□□□□ 0.56
USH1C-207ENST00000527720 MYD88Q99836 296 aa18.57■□□□□ 0.56
USH1C-207ENST00000527720 USP16Q9Y5T5 823 aa18.57■□□□□ 0.56
USH1C-207ENST00000527720 PAPPAQ13219 1627 aa18.57■□□□□ 0.56
USH1C-207ENST00000527720 CWC27Q6UX04 472 aaKnown RBP18.56■□□□□ 0.56
USH1C-207ENST00000527720 SNX14Q9Y5W7 946 aa18.56■□□□□ 0.56
USH1C-207ENST00000527720 PCDH11XQ9BZA7 1347 aa18.56■□□□□ 0.56
USH1C-207ENST00000527720 PCDH11YQ9BZA8 1340 aa18.56■□□□□ 0.56
USH1C-207ENST00000527720 FAM43AQ8N2R8 423 aa18.56■□□□□ 0.56
USH1C-207ENST00000527720 LMBRD1Q9NUN5 540 aa18.56■□□□□ 0.56
USH1C-207ENST00000527720 STRCQ7RTU9 1775 aa18.55■□□□□ 0.56
USH1C-207ENST00000527720 BRD1O95696 1058 aa18.54■□□□□ 0.56
USH1C-207ENST00000527720 UPF3BQ9BZI7 483 aaKnown RBP18.54■□□□□ 0.56
USH1C-207ENST00000527720 NUP188Q5SRE5 1749 aa18.54■□□□□ 0.56
USH1C-207ENST00000527720 SOS2Q07890 1332 aaPredicted RBP18.54■□□□□ 0.56
USH1C-207ENST00000527720 EAF2Q96CJ1 260 aaPredicted RBP18.54■□□□□ 0.56
USH1C-207ENST00000527720 COPRSQ9NQ92 184 aa18.54■□□□□ 0.56
USH1C-207ENST00000527720 SHANK3Q9BYB0 1731 aa18.53■□□□□ 0.56
USH1C-207ENST00000527720 COL5A2P05997 1499 aaPredicted RBP18.53■□□□□ 0.56
USH1C-207ENST00000527720 ERVV-2B6SEH9 535 aa18.53■□□□□ 0.56
USH1C-207ENST00000527720 PLBD2Q8NHP8 589 aa18.53■□□□□ 0.56
USH1C-207ENST00000527720 KCNB2Q92953 911 aa18.53■□□□□ 0.56
USH1C-207ENST00000527720 TTC14Q96N46 770 aa18.53■□□□□ 0.56
USH1C-207ENST00000527720 RABL6Q3YEC7 729 aaPredicted RBP18.52■□□□□ 0.56
USH1C-207ENST00000527720 ZCRB1Q8TBF4 217 aaKnown RBP18.52■□□□□ 0.56
USH1C-207ENST00000527720 SNRKQ9NRH2 765 aa18.52■□□□□ 0.56
USH1C-207ENST00000527720 HSPA2P54652 639 aa18.52■□□□□ 0.55
USH1C-207ENST00000527720 PRDM11Q9NQV5 511 aa18.52■□□□□ 0.55
USH1C-207ENST00000527720 NKX1-1Q15270 411 aaPredicted RBP18.51■□□□□ 0.55
USH1C-207ENST00000527720 ARXQ96QS3 562 aa18.51■□□□□ 0.55
USH1C-207ENST00000527720 TM6SF1Q9BZW5 370 aa18.51■□□□□ 0.55
USH1C-207ENST00000527720 EPHA10Q5JZY3 1008 aa18.51■□□□□ 0.55
USH1C-207ENST00000527720 RTN4Q9NQC3 1192 aaKnown RBP18.51■□□□□ 0.55
USH1C-207ENST00000527720 ZNF445P59923 1031 aa18.5■□□□□ 0.55
USH1C-207ENST00000527720 GAS2L3Q86XJ1 694 aa18.5■□□□□ 0.55
USH1C-207ENST00000527720 RASEFQ8IZ41 740 aa18.5■□□□□ 0.55
USH1C-207ENST00000527720 PANK2Q9BZ23 570 aa18.5■□□□□ 0.55
USH1C-207ENST00000527720 RFX5P48382 616 aaPredicted RBP18.49■□□□□ 0.55
USH1C-207ENST00000527720 TOM1L2Q6ZVM7 507 aa18.49■□□□□ 0.55
USH1C-207ENST00000527720 CCDC8Q9H0W5 538 aaPredicted RBP18.49■□□□□ 0.55
USH1C-207ENST00000527720 DNAJC5Q9H3Z4 198 aa18.49■□□□□ 0.55
Retrieved 100 of 20,778 RNA–protein pairs in 52.5 ms