RNA–Protein interactions for RNA: ENST00000526553.5

CD44-223, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 4

Gene CD44, Length 571 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-223ENST00000526553 GJA3Q9Y6H8 435 aa9.2□□□□□ -0.94
CD44-223ENST00000526553 HIF1AQ16665 826 aa9.19□□□□□ -0.94
CD44-223ENST00000526553 VTI1AQ96AJ9 217 aa9.19□□□□□ -0.94
CD44-223ENST00000526553 SLAIN2Q9P270 581 aa9.19□□□□□ -0.94
CD44-223ENST00000526553 USTQ9Y2C2 406 aa9.19□□□□□ -0.94
CD44-223ENST00000526553 ATXN7O15265 892 aaPredicted RBP9.18□□□□□ -0.94
CD44-223ENST00000526553 FAM157BP0CG42 384 aa9.18□□□□□ -0.94
CD44-223ENST00000526553 COL26A1Q96A83 441 aa9.18□□□□□ -0.94
CD44-223ENST00000526553 NGLY1Q96IV0 654 aa9.18□□□□□ -0.94
CD44-223ENST00000526553 CNTNAP3BQ96NU0 1288 aa9.18□□□□□ -0.94
CD44-223ENST00000526553 CNTNAP3Q9BZ76 1288 aa9.18□□□□□ -0.94
CD44-223ENST00000526553 UTP3Q9NQZ2 479 aaKnown RBP eCLIP9.18□□□□□ -0.94
CD44-223ENST00000526553 MBIPQ9NS73 344 aa9.18□□□□□ -0.94
CD44-223ENST00000526553 ANKIB1Q9P2G1 1089 aa9.18□□□□□ -0.94
CD44-223ENST00000526553 BNIP3LO60238 219 aa9.17□□□□□ -0.94
CD44-223ENST00000526553 ATP2B4P23634 1241 aa9.17□□□□□ -0.94
CD44-223ENST00000526553 MYO19Q96H55 970 aa9.17□□□□□ -0.94
CD44-223ENST00000526553 QTRT2Q9H974 415 aaKnown RBP9.17□□□□□ -0.94
CD44-223ENST00000526553 NEUROD4Q9HD90 331 aa9.17□□□□□ -0.94
CD44-223ENST00000526553 INSM1Q01101 510 aaPredicted RBP9.16□□□□□ -0.94
CD44-223ENST00000526553 LRRC69Q6ZNQ3 347 aa9.16□□□□□ -0.94
CD44-223ENST00000526553 KLRG1Q96E93 195 aa9.16□□□□□ -0.94
CD44-223ENST00000526553 ABHD17AQ96GS6 310 aa9.16□□□□□ -0.94
CD44-223ENST00000526553 PTCD1O75127 700 aaKnown RBP9.15□□□□□ -0.94
CD44-223ENST00000526553 SRSF11Q05519 484 aaKnown RBP9.15□□□□□ -0.94
CD44-223ENST00000526553 SUSD3Q96L08 255 aa9.15□□□□□ -0.94
CD44-223ENST00000526553 EFSO43281 561 aa9.14□□□□□ -0.95
CD44-223ENST00000526553 SLURP2P0DP57 97 aa9.14□□□□□ -0.95
CD44-223ENST00000526553 MX2P20592 715 aa9.14□□□□□ -0.95
CD44-223ENST00000526553 FGFR3P22607 806 aa9.14□□□□□ -0.95
CD44-223ENST00000526553 TNP2Q05952 138 aa9.14□□□□□ -0.95
CD44-223ENST00000526553 LAMC2Q13753 1193 aa9.14□□□□□ -0.95
CD44-223ENST00000526553 IER5Q5VY09 327 aa9.14□□□□□ -0.95
CD44-223ENST00000526553 HSH2DQ96JZ2 352 aa9.14□□□□□ -0.95
CD44-223ENST00000526553 NSFL1CQ9UNZ2 370 aaKnown RBP9.14□□□□□ -0.95
CD44-223ENST00000526553 DCDC2BA2VCK2 349 aa9.13□□□□□ -0.95
CD44-223ENST00000526553 KHNYNO15037 678 aaKnown RBP9.13□□□□□ -0.95
CD44-223ENST00000526553 MAPTP10636 758 aaKnown RBP9.13□□□□□ -0.95
CD44-223ENST00000526553 IGF1RP08069 1367 aa9.12□□□□□ -0.95
CD44-223ENST00000526553 TGFBR3LH3BV60 316 aa9.12□□□□□ -0.95
CD44-223ENST00000526553 ADAMTS2O95450 1211 aa9.12□□□□□ -0.95
CD44-223ENST00000526553 MAP2K3P46734 347 aa9.12□□□□□ -0.95
CD44-223ENST00000526553 FAM182BQ5T319 152 aa9.12□□□□□ -0.95
CD44-223ENST00000526553 RETREG2Q8NC44 543 aa9.12□□□□□ -0.95
CD44-223ENST00000526553 ZNF280CQ8ND82 737 aa9.12□□□□□ -0.95
CD44-223ENST00000526553 LORP23490 312 aaPredicted RBP9.11□□□□□ -0.95
CD44-223ENST00000526553 SSFA2P28290 1259 aa9.11□□□□□ -0.95
CD44-223ENST00000526553 TYRO3Q06418 890 aa9.11□□□□□ -0.95
CD44-223ENST00000526553 PDE4CQ08493 712 aa9.11□□□□□ -0.95
CD44-223ENST00000526553 DGKZQ13574 1117 aa9.11□□□□□ -0.95
CD44-223ENST00000526553 MKNK1Q9BUB5 465 aa9.11□□□□□ -0.95
CD44-223ENST00000526553 C11orf91Q3C1V1 193 aa9.1□□□□□ -0.95
CD44-223ENST00000526553 COX20Q5RI15 118 aa9.1□□□□□ -0.95
CD44-223ENST00000526553 C16orf46Q6P387 395 aa9.1□□□□□ -0.95
CD44-223ENST00000526553 BTLAQ7Z6A9 289 aa9.1□□□□□ -0.95
CD44-223ENST00000526553 ZSCAN1Q8NBB4 408 aa9.1□□□□□ -0.95
CD44-223ENST00000526553 KLK14Q9P0G3 267 aa9.1□□□□□ -0.95
CD44-223ENST00000526553 MARK1Q9P0L2 795 aa9.1□□□□□ -0.95
CD44-223ENST00000526553 HCN2Q9UL51 889 aa9.1□□□□□ -0.95
CD44-223ENST00000526553 LRFN2Q9ULH4 789 aa9.1□□□□□ -0.95
CD44-223ENST00000526553 BCS1LQ9Y276 419 aa9.1□□□□□ -0.95
CD44-223ENST00000526553 CARNS1A5YM72 827 aa9.09□□□□□ -0.95
CD44-223ENST00000526553 BMP4P12644 408 aa9.09□□□□□ -0.95
CD44-223ENST00000526553 CTBSQ01459 385 aa9.09□□□□□ -0.95
CD44-223ENST00000526553 B4GALNT3Q6L9W6 998 aa9.09□□□□□ -0.95
CD44-223ENST00000526553 CEP63Q96MT8 703 aa9.09□□□□□ -0.95
CD44-223ENST00000526553 BRD7Q9NPI1 651 aa9.09□□□□□ -0.95
CD44-223ENST00000526553 DMGDHQ9UI17 866 aaKnown RBP9.09□□□□□ -0.95
CD44-223ENST00000526553 CD33P20138 364 aa9.08□□□□□ -0.96
CD44-223ENST00000526553 KCNQ4P56696 695 aa9.08□□□□□ -0.96
CD44-223ENST00000526553 CAPN12Q6ZSI9 719 aa9.08□□□□□ -0.96
CD44-223ENST00000526553 C2CD2LO14523 706 aa9.07□□□□□ -0.96
CD44-223ENST00000526553 SAP130Q9H0E3 1048 aa9.07□□□□□ -0.96
CD44-223ENST00000526553 STRN4Q9NRL3 753 aa9.07□□□□□ -0.96
CD44-223ENST00000526553 PHLDB3Q6NSJ2 640 aa9.06□□□□□ -0.96
CD44-223ENST00000526553 IFT43Q96FT9 208 aa9.06□□□□□ -0.96
CD44-223ENST00000526553 AVENQ9NQS1 362 aaPredicted RBP9.06□□□□□ -0.96
CD44-223ENST00000526553 TNFRSF10BO14763 440 aa9.05□□□□□ -0.96
CD44-223ENST00000526553 ARAFP10398 606 aa9.05□□□□□ -0.96
CD44-223ENST00000526553 IDH3AP50213 366 aa9.05□□□□□ -0.96
CD44-223ENST00000526553 SFSWAPQ12872 951 aaKnown RBP9.05□□□□□ -0.96
CD44-223ENST00000526553 NAA30Q147X3 362 aaPredicted RBP9.05□□□□□ -0.96
CD44-223ENST00000526553 ZNF385CQ66K41 422 aaPredicted RBP9.05□□□□□ -0.96
CD44-223ENST00000526553 ACDQ96AP0 544 aa9.05□□□□□ -0.96
CD44-223ENST00000526553 OXCT2Q9BYC2 517 aaPredicted RBP9.05□□□□□ -0.96
CD44-223ENST00000526553 SEPT3Q9UH03 358 aa9.05□□□□□ -0.96
CD44-223ENST00000526553 GDF2Q9UK05 429 aaPredicted RBP9.05□□□□□ -0.96
CD44-223ENST00000526553 KCNH4Q9UQ05 1017 aa9.05□□□□□ -0.96
CD44-223ENST00000526553 MICAL2O94851 1124 aa9.04□□□□□ -0.96
CD44-223ENST00000526553 EPB42P16452 691 aa9.04□□□□□ -0.96
CD44-223ENST00000526553 BRD2P25440 801 aaKnown RBP9.04□□□□□ -0.96
CD44-223ENST00000526553 GOLGA6L1Q8N7Z2 621 aa9.04□□□□□ -0.96
CD44-223ENST00000526553 LRRC4BQ9NT99 713 aa9.04□□□□□ -0.96
CD44-223ENST00000526553 MTMR7Q9Y216 660 aa9.04□□□□□ -0.96
CD44-223ENST00000526553 CELA2BP08218 269 aaPredicted RBP9.03□□□□□ -0.96
CD44-223ENST00000526553 INPP5BP32019 993 aa9.03□□□□□ -0.96
CD44-223ENST00000526553 ARSDP51689 593 aa9.03□□□□□ -0.96
CD44-223ENST00000526553 ZNF468Q5VIY5 522 aaPredicted RBP9.03□□□□□ -0.96
CD44-223ENST00000526553 LYPD4Q6UWN0 246 aa9.03□□□□□ -0.96
CD44-223ENST00000526553 HELQQ8TDG4 1101 aa9.03□□□□□ -0.96
Retrieved 100 of 20,778 RNA–protein pairs in 31.2 ms