RNA–Protein interactions for RNA: ENST00000525469.1

CD44-218, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 3

Gene CD44, Length 705 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-218ENST00000525469 BTG4Q9NY30 223 aa7.06□□□□□ -1.28
CD44-218ENST00000525469 PKD2L1Q9P0L9 805 aa7.06□□□□□ -1.28
CD44-218ENST00000525469 LIMD1Q9UGP4 676 aa7.06□□□□□ -1.28
CD44-218ENST00000525469 PCDHB15Q9Y5E8 787 aa7.06□□□□□ -1.28
CD44-218ENST00000525469 ROBO2Q9HCK4 1378 aa7.06□□□□□ -1.28
CD44-218ENST00000525469 KIF1AQ12756 1690 aa7.06□□□□□ -1.28
CD44-218ENST00000525469 CDC42BPGQ6DT37 1551 aa7.05□□□□□ -1.28
CD44-218ENST00000525469 LILRB3O75022 631 aa7.05□□□□□ -1.28
CD44-218ENST00000525469 CTHP32929 405 aa7.05□□□□□ -1.28
CD44-218ENST00000525469 KANK4Q5T7N3 995 aaPredicted RBP7.05□□□□□ -1.28
CD44-218ENST00000525469 LYPD8Q6UX82 237 aa7.05□□□□□ -1.28
CD44-218ENST00000525469 NRAPQ86VF7 1730 aa7.04□□□□□ -1.28
CD44-218ENST00000525469 NRKQ7Z2Y5 1582 aa7.04□□□□□ -1.28
CD44-218ENST00000525469 CFAP99D6REC4 459 aa7.04□□□□□ -1.28
CD44-218ENST00000525469 PDE3BQ13370 1112 aa7.04□□□□□ -1.28
CD44-218ENST00000525469 SNIP1Q8TAD8 396 aaKnown RBP7.04□□□□□ -1.28
CD44-218ENST00000525469 CCER1Q8TC90 406 aaPredicted RBP7.04□□□□□ -1.28
CD44-218ENST00000525469 UNC93B1Q9H1C4 597 aa7.04□□□□□ -1.28
CD44-218ENST00000525469 POLR3EQ9NVU0 708 aa7.04□□□□□ -1.28
CD44-218ENST00000525469 RGPD8O14715 1765 aaPredicted RBP7.04□□□□□ -1.28
CD44-218ENST00000525469 ARHGEF10O15013 1369 aa7.04□□□□□ -1.28
CD44-218ENST00000525469 ABCA3Q99758 1704 aa7.04□□□□□ -1.28
CD44-218ENST00000525469 SPATA31A5Q5VU36 1347 aa7.03□□□□□ -1.28
CD44-218ENST00000525469 SPATA31A7Q8IWB4 1347 aa7.03□□□□□ -1.28
CD44-218ENST00000525469 TNS3Q68CZ2 1445 aa7.03□□□□□ -1.28
CD44-218ENST00000525469 COL14A1Q05707 1796 aaKnown RBP7.03□□□□□ -1.28
CD44-218ENST00000525469 GPR162Q16538 588 aa7.03□□□□□ -1.28
CD44-218ENST00000525469 TMEM132AQ24JP5 1023 aa7.03□□□□□ -1.28
CD44-218ENST00000525469 RC3H1Q5TC82 1133 aaKnown RBP7.03□□□□□ -1.28
CD44-218ENST00000525469 EHBP1Q8NDI1 1231 aa7.03□□□□□ -1.28
CD44-218ENST00000525469 ARMC2Q8NEN0 867 aa7.03□□□□□ -1.28
CD44-218ENST00000525469 FAM117AQ9C073 453 aa7.03□□□□□ -1.28
CD44-218ENST00000525469 ZBTB7AO95365 584 aa7.02□□□□□ -1.29
CD44-218ENST00000525469 QPCTQ16769 361 aa7.02□□□□□ -1.29
CD44-218ENST00000525469 SYT17Q9BSW7 474 aa7.02□□□□□ -1.29
CD44-218ENST00000525469 FHDC1Q9C0D6 1143 aaPredicted RBP7.02□□□□□ -1.29
CD44-218ENST00000525469 TOR4AQ9NXH8 423 aa7.02□□□□□ -1.29
CD44-218ENST00000525469 MYOM1P52179 1685 aa7.02□□□□□ -1.29
CD44-218ENST00000525469 THSD7AQ9UPZ6 1657 aa7.02□□□□□ -1.29
CD44-218ENST00000525469 CEP350Q5VT06 3117 aa7.02□□□□□ -1.29
CD44-218ENST00000525469 NAIPQ13075 1403 aa7.01□□□□□ -1.29
CD44-218ENST00000525469 FAM50AQ14320 339 aaKnown RBP7.01□□□□□ -1.29
CD44-218ENST00000525469 CTC1Q2NKJ3 1217 aa7.01□□□□□ -1.29
CD44-218ENST00000525469 MRGPRX2Q96LB1 330 aa7.01□□□□□ -1.29
CD44-218ENST00000525469 GOPCQ9HD26 462 aa7.01□□□□□ -1.29
CD44-218ENST00000525469 NEXMIFQ5QGS0 1516 aa7.01□□□□□ -1.29
CD44-218ENST00000525469 DLC1Q96QB1 1528 aa7.01□□□□□ -1.29
CD44-218ENST00000525469 SBNO1A3KN83 1393 aa7□□□□□ -1.29
CD44-218ENST00000525469 NUP155O75694 1391 aa7□□□□□ -1.29
CD44-218ENST00000525469 C11orf95C9JLR9 678 aaPredicted RBP7□□□□□ -1.29
CD44-218ENST00000525469 PTCRAQ6ISU1 281 aaPredicted RBP7□□□□□ -1.29
CD44-218ENST00000525469 ZNF511Q8NB15 262 aa7□□□□□ -1.29
CD44-218ENST00000525469 PNMA1Q8ND90 353 aa7□□□□□ -1.29
CD44-218ENST00000525469 PCMTD1Q96MG8 357 aaPredicted RBP7□□□□□ -1.29
CD44-218ENST00000525469 STRN4Q9NRL3 753 aa7□□□□□ -1.29
CD44-218ENST00000525469 FMN2Q9NZ56 1722 aa7□□□□□ -1.29
CD44-218ENST00000525469 VPS8Q8N3P4 1428 aa7□□□□□ -1.29
CD44-218ENST00000525469 CASZ1Q86V15 1759 aa7□□□□□ -1.29
CD44-218ENST00000525469 PLEKHG3A1L390 1219 aa6.99□□□□□ -1.29
CD44-218ENST00000525469 F12P00748 615 aaPredicted RBP6.99□□□□□ -1.29
CD44-218ENST00000525469 VARSP26640 1264 aaKnown RBP6.99□□□□□ -1.29
CD44-218ENST00000525469 SKOR1P84550 965 aa6.99□□□□□ -1.29
CD44-218ENST00000525469 PRDM11Q9NQV5 511 aa6.99□□□□□ -1.29
CD44-218ENST00000525469 STK26Q9P289 416 aa6.99□□□□□ -1.29
CD44-218ENST00000525469 USP35Q9P2H5 1018 aa6.99□□□□□ -1.29
CD44-218ENST00000525469 PRAG1Q86YV5 1406 aa6.99□□□□□ -1.29
CD44-218ENST00000525469 RRBP1Q9P2E9 1410 aaKnown RBP6.99□□□□□ -1.29
CD44-218ENST00000525469 KAT6BQ8WYB5 2073 aa6.99□□□□□ -1.29
CD44-218ENST00000525469 SPATA31A1Q5TZJ5 1347 aa6.99□□□□□ -1.29
CD44-218ENST00000525469 EIF5BO60841 1220 aaKnown RBP6.98□□□□□ -1.29
CD44-218ENST00000525469 HSPA6P17066 643 aa6.98□□□□□ -1.29
CD44-218ENST00000525469 EVA1CP58658 441 aa6.98□□□□□ -1.29
CD44-218ENST00000525469 SH3BP2P78314 561 aa6.98□□□□□ -1.29
CD44-218ENST00000525469 LINC01559Q495D7 138 aa6.98□□□□□ -1.29
CD44-218ENST00000525469 PPP2R2DQ66LE6 453 aa6.98□□□□□ -1.29
CD44-218ENST00000525469 WAPLQ7Z5K2 1190 aa6.98□□□□□ -1.29
CD44-218ENST00000525469 CRIPAKQ8N1N5 446 aa6.98□□□□□ -1.29
CD44-218ENST00000525469 UBE2Q2Q8WVN8 375 aa6.98□□□□□ -1.29
CD44-218ENST00000525469 BAP1Q92560 729 aa6.98□□□□□ -1.29
CD44-218ENST00000525469 STK32BQ9NY57 414 aa6.98□□□□□ -1.29
CD44-218ENST00000525469 MAP10Q9P2G4 905 aa6.98□□□□□ -1.29
CD44-218ENST00000525469 UTRNP46939 3433 aa6.98□□□□□ -1.29
CD44-218ENST00000525469 IFT172Q9UG01 1749 aa6.98□□□□□ -1.29
CD44-218ENST00000525469 RGPD3A6NKT7 1758 aaPredicted RBP6.97□□□□□ -1.29
CD44-218ENST00000525469 RGPD4Q7Z3J3 1758 aa6.97□□□□□ -1.29
CD44-218ENST00000525469 SBF2Q86WG5 1849 aa6.97□□□□□ -1.29
CD44-218ENST00000525469 PLSCR1O15162 318 aa6.97□□□□□ -1.29
CD44-218ENST00000525469 ALDH1A1P00352 501 aa6.97□□□□□ -1.29
CD44-218ENST00000525469 AVPP01185 164 aa6.97□□□□□ -1.29
CD44-218ENST00000525469 AGERQ15109 404 aa6.97□□□□□ -1.29
CD44-218ENST00000525469 RTL5Q5HYW3 569 aaPredicted RBP6.97□□□□□ -1.29
CD44-218ENST00000525469 BPHLQ86WA6 291 aaPredicted RBP6.97□□□□□ -1.29
CD44-218ENST00000525469 FAM174AQ8TBP5 190 aa6.97□□□□□ -1.29
CD44-218ENST00000525469 GPKOWQ92917 476 aaPredicted RBP eCLIP6.97□□□□□ -1.29
CD44-218ENST00000525469 GNL3Q9BVP2 549 aaKnown RBP eCLIP6.97□□□□□ -1.29
CD44-218ENST00000525469 MTFR1LQ9H019 292 aa6.97□□□□□ -1.29
CD44-218ENST00000525469 WASF2Q9Y6W5 498 aa6.97□□□□□ -1.29
CD44-218ENST00000525469 CLTCL1P53675 1640 aa6.97□□□□□ -1.29
CD44-218ENST00000525469 AXIN1O15169 862 aa6.96□□□□□ -1.3
CD44-218ENST00000525469 RPGRIP1LQ68CZ1 1315 aa6.96□□□□□ -1.3
Retrieved 100 of 20,778 RNA–protein pairs in 10.8 ms