RNA–Protein interactions for RNA: ENST00000520228.1

SDCBP-208, Transcript of syndecan binding protein, humanhuman

TSL 2

Gene SDCBP, Length 564 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDCBP-208ENST00000520228 MRC2Q9UBG0 1479 aa11.85□□□□□ -0.51
SDCBP-208ENST00000520228 PATL2C9JE40 543 aaKnown RBP11.85□□□□□ -0.51
SDCBP-208ENST00000520228 RTN1Q16799 776 aa11.85□□□□□ -0.51
SDCBP-208ENST00000520228 CCER1Q8TC90 406 aaPredicted RBP11.85□□□□□ -0.51
SDCBP-208ENST00000520228 LRFN2Q9ULH4 789 aa11.85□□□□□ -0.51
SDCBP-208ENST00000520228 F11P03951 625 aa11.84□□□□□ -0.51
SDCBP-208ENST00000520228 C16orf46Q6P387 395 aa11.84□□□□□ -0.51
SDCBP-208ENST00000520228 GTF3C2Q8WUA4 911 aaPredicted RBP11.84□□□□□ -0.51
SDCBP-208ENST00000520228 KLRG1Q96E93 195 aa11.84□□□□□ -0.51
SDCBP-208ENST00000520228 NGLY1Q96IV0 654 aa11.84□□□□□ -0.51
SDCBP-208ENST00000520228 MTMR7Q9Y216 660 aa11.84□□□□□ -0.51
SDCBP-208ENST00000520228 GPC6Q9Y625 555 aaPredicted RBP11.84□□□□□ -0.51
SDCBP-208ENST00000520228 TATP17735 454 aaPredicted RBP11.83□□□□□ -0.52
SDCBP-208ENST00000520228 SERPINB4P48594 390 aa11.83□□□□□ -0.52
SDCBP-208ENST00000520228 CCDC155Q8N6L0 562 aa11.83□□□□□ -0.52
SDCBP-208ENST00000520228 ZIC5Q96T25 663 aa11.83□□□□□ -0.52
SDCBP-208ENST00000520228 CRISPLD1Q9H336 500 aa11.83□□□□□ -0.52
SDCBP-208ENST00000520228 IVNS1ABPQ9Y6Y0 642 aa11.83□□□□□ -0.52
SDCBP-208ENST00000520228 EGFL7Q9UHF1 273 aa11.82□□□□□ -0.52
SDCBP-208ENST00000520228 DNMT3AQ9Y6K1 912 aaPredicted RBP11.82□□□□□ -0.52
SDCBP-208ENST00000520228 THOC2Q8NI27 1593 aaKnown RBP11.82□□□□□ -0.52
SDCBP-208ENST00000520228 KIF21AQ7Z4S6 1674 aa11.81□□□□□ -0.52
SDCBP-208ENST00000520228 TNFRSF10BO14763 440 aa11.81□□□□□ -0.52
SDCBP-208ENST00000520228 HELQQ8TDG4 1101 aa11.81□□□□□ -0.52
SDCBP-208ENST00000520228 THBS1P07996 1170 aa11.8□□□□□ -0.52
SDCBP-208ENST00000520228 RHPN1Q8TCX5 695 aa11.8□□□□□ -0.52
SDCBP-208ENST00000520228 GAS2L1Q99501 681 aaPredicted RBP11.8□□□□□ -0.52
SDCBP-208ENST00000520228 GPAMQ9HCL2 828 aa11.8□□□□□ -0.52
SDCBP-208ENST00000520228 C11orf91Q3C1V1 193 aa11.79□□□□□ -0.52
SDCBP-208ENST00000520228 RUBCNLQ9H714 662 aa11.79□□□□□ -0.52
SDCBP-208ENST00000520228 CUEDC1Q9NWM3 386 aaPredicted RBP11.79□□□□□ -0.52
SDCBP-208ENST00000520228 BCS1LQ9Y276 419 aa11.79□□□□□ -0.52
SDCBP-208ENST00000520228 NPR3P17342 541 aa11.78□□□□□ -0.52
SDCBP-208ENST00000520228 TRIM26Q12899 539 aaPredicted RBP11.78□□□□□ -0.52
SDCBP-208ENST00000520228 KLK14Q9P0G3 267 aa11.78□□□□□ -0.52
SDCBP-208ENST00000520228 WDR62O43379 1518 aa11.77□□□□□ -0.52
SDCBP-208ENST00000520228 A0A1W2PNR3 127 aa11.77□□□□□ -0.53
SDCBP-208ENST00000520228 PPFIA3O75145 1194 aa11.77□□□□□ -0.53
SDCBP-208ENST00000520228 ITGA6P23229 1130 aa11.77□□□□□ -0.53
SDCBP-208ENST00000520228 DGKZQ13574 1117 aa11.77□□□□□ -0.53
SDCBP-208ENST00000520228 UBAP2LQ14157 1087 aaKnown RBP11.77□□□□□ -0.53
SDCBP-208ENST00000520228 DBN1Q16643 649 aa11.77□□□□□ -0.53
SDCBP-208ENST00000520228 ARSJQ5FYB0 599 aaPredicted RBP11.77□□□□□ -0.53
SDCBP-208ENST00000520228 FAM26DQ5JW98 314 aa11.77□□□□□ -0.53
SDCBP-208ENST00000520228 BICDL1Q6ZP65 573 aa11.77□□□□□ -0.53
SDCBP-208ENST00000520228 SUSD3Q96L08 255 aa11.77□□□□□ -0.53
SDCBP-208ENST00000520228 ICMTO60725 284 aa11.76□□□□□ -0.53
SDCBP-208ENST00000520228 FKBP4Q02790 459 aaKnown RBP eCLIP11.76□□□□□ -0.53
SDCBP-208ENST00000520228 ZNF211Q13398 564 aaPredicted RBP11.76□□□□□ -0.53
SDCBP-208ENST00000520228 MTMR3Q13615 1198 aa11.76□□□□□ -0.53
SDCBP-208ENST00000520228 LBRQ14739 615 aaKnown RBP11.76□□□□□ -0.53
SDCBP-208ENST00000520228 ECM1Q16610 540 aa11.76□□□□□ -0.53
SDCBP-208ENST00000520228 ZNF787Q6DD87 383 aa11.76□□□□□ -0.53
SDCBP-208ENST00000520228 NLRP8Q86W28 1048 aa11.76□□□□□ -0.53
SDCBP-208ENST00000520228 TRIM22Q8IYM9 498 aa11.76□□□□□ -0.53
SDCBP-208ENST00000520228 ZNF280CQ8ND82 737 aa11.76□□□□□ -0.53
SDCBP-208ENST00000520228 URB2Q14146 1524 aaKnown RBP11.76□□□□□ -0.53
SDCBP-208ENST00000520228 SOWAHDA6NJG2 315 aa11.75□□□□□ -0.53
SDCBP-208ENST00000520228 ABL1P00519 1130 aa11.75□□□□□ -0.53
SDCBP-208ENST00000520228 SF3B2Q13435 895 aaKnown RBP11.75□□□□□ -0.53
SDCBP-208ENST00000520228 PGBD3Q8N328 593 aa11.75□□□□□ -0.53
SDCBP-208ENST00000520228 STIM2Q9P246 746 aa11.75□□□□□ -0.53
SDCBP-208ENST00000520228 DMGDHQ9UI17 866 aaKnown RBP11.75□□□□□ -0.53
SDCBP-208ENST00000520228 TGFBR3LH3BV60 316 aa11.74□□□□□ -0.53
SDCBP-208ENST00000520228 HIF1AQ16665 826 aa11.74□□□□□ -0.53
SDCBP-208ENST00000520228 IER5Q5VY09 327 aa11.74□□□□□ -0.53
SDCBP-208ENST00000520228 RIPOR1Q6ZS17 1223 aa11.74□□□□□ -0.53
SDCBP-208ENST00000520228 GMCL1Q96IK5 515 aa11.74□□□□□ -0.53
SDCBP-208ENST00000520228 HSH2DQ96JZ2 352 aa11.74□□□□□ -0.53
SDCBP-208ENST00000520228 ANO2Q9NQ90 1003 aa11.74□□□□□ -0.53
SDCBP-208ENST00000520228 ZBTB7CA1YPR0 619 aa11.73□□□□□ -0.53
SDCBP-208ENST00000520228 H7C1W4 665 aa11.73□□□□□ -0.53
SDCBP-208ENST00000520228 BRD2P25440 801 aaKnown RBP11.73□□□□□ -0.53
SDCBP-208ENST00000520228 SAMD5Q5TGI4 173 aa11.73□□□□□ -0.53
SDCBP-208ENST00000520228 LRRC69Q6ZNQ3 347 aa11.73□□□□□ -0.53
SDCBP-208ENST00000520228 ETFBKMTQ8IXQ9 262 aa11.73□□□□□ -0.53
SDCBP-208ENST00000520228 IFT43Q96FT9 208 aa11.73□□□□□ -0.53
SDCBP-208ENST00000520228 ANKIB1Q9P2G1 1089 aa11.73□□□□□ -0.53
SDCBP-208ENST00000520228 NXF1Q9UBU9 619 aaKnown RBP11.73□□□□□ -0.53
SDCBP-208ENST00000520228 EFHC2Q5JST6 749 aa11.72□□□□□ -0.53
SDCBP-208ENST00000520228 ZNF837Q96EG3 531 aaPredicted RBP11.72□□□□□ -0.53
SDCBP-208ENST00000520228 NUCKS1Q9H1E3 243 aaKnown RBP11.72□□□□□ -0.53
SDCBP-208ENST00000520228 ZBTB39O15060 712 aa11.71□□□□□ -0.53
SDCBP-208ENST00000520228 NPAS3Q8IXF0 933 aa11.71□□□□□ -0.53
SDCBP-208ENST00000520228 NANOS1Q8WY41 292 aaKnown RBP11.71□□□□□ -0.53
SDCBP-208ENST00000520228 H3BRB1 525 aa11.7□□□□□ -0.54
SDCBP-208ENST00000520228 MPSTP25325 297 aa11.7□□□□□ -0.54
SDCBP-208ENST00000520228 ZCCHC2Q9C0B9 1178 aaKnown RBP11.7□□□□□ -0.54
SDCBP-208ENST00000520228 TUT1Q9H6E5 874 aaKnown RBP11.7□□□□□ -0.54
SDCBP-208ENST00000520228 GZF1Q9H116 711 aaPredicted RBP11.69□□□□□ -0.54
SDCBP-208ENST00000520228 NDFIP2Q9NV92 336 aa11.69□□□□□ -0.54
SDCBP-208ENST00000520228 ABCC8Q09428 1581 aa11.69□□□□□ -0.54
SDCBP-208ENST00000520228 MICAL2O94851 1124 aa11.68□□□□□ -0.54
SDCBP-208ENST00000520228 FAM13AO94988 1023 aa11.68□□□□□ -0.54
SDCBP-208ENST00000520228 ARHGAP4P98171 946 aa11.68□□□□□ -0.54
SDCBP-208ENST00000520228 FIGNL1Q6PIW4 674 aa11.68□□□□□ -0.54
SDCBP-208ENST00000520228 BTLAQ7Z6A9 289 aa11.68□□□□□ -0.54
SDCBP-208ENST00000520228 TREML1Q86YW5 311 aa11.68□□□□□ -0.54
SDCBP-208ENST00000520228 ABTB2Q8N961 1025 aa11.68□□□□□ -0.54
SDCBP-208ENST00000520228 NEUROD4Q9HD90 331 aa11.68□□□□□ -0.54
Retrieved 100 of 20,778 RNA–protein pairs in 166.1 ms