RNA–Protein interactions for RNA: ENST00000514439.1

CPNE4-211, Transcript of copine 4, humanhuman

TSL 1 (best)

Gene CPNE4, Length 2,312 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPNE4-211ENST00000514439 SLAIN2Q9P270 581 aa10.01□□□□□ -0.81
CPNE4-211ENST00000514439 USP42Q9H9J4 1324 aaKnown RBP10.01□□□□□ -0.81
CPNE4-211ENST00000514439 NPM3O75607 178 aaKnown RBP10□□□□□ -0.81
CPNE4-211ENST00000514439 LRP10Q7Z4F1 713 aa10□□□□□ -0.81
CPNE4-211ENST00000514439 BICC1Q9H694 974 aaKnown RBP10□□□□□ -0.81
CPNE4-211ENST00000514439 COL5A2P05997 1499 aaPredicted RBP10□□□□□ -0.81
CPNE4-211ENST00000514439 NEURL1BA8MQ27 555 aa10□□□□□ -0.81
CPNE4-211ENST00000514439 MCCP23508 829 aa10□□□□□ -0.81
CPNE4-211ENST00000514439 PIP4K2AP48426 406 aaPredicted RBP10□□□□□ -0.81
CPNE4-211ENST00000514439 NEXNQ0ZGT2 675 aa10□□□□□ -0.81
CPNE4-211ENST00000514439 TOM1L2Q6ZVM7 507 aa10□□□□□ -0.81
CPNE4-211ENST00000514439 IL25Q9H293 177 aa10□□□□□ -0.81
CPNE4-211ENST00000514439 PARP4Q9UKK3 1724 aaKnown RBP10□□□□□ -0.81
CPNE4-211ENST00000514439 TTC41PQ6P2S7 1318 aa9.99□□□□□ -0.81
CPNE4-211ENST00000514439 GLI3P10071 1580 aa9.99□□□□□ -0.81
CPNE4-211ENST00000514439 ERC1Q8IUD2 1116 aa9.99□□□□□ -0.81
CPNE4-211ENST00000514439 CLASRPQ8N2M8 674 aaKnown RBP9.99□□□□□ -0.81
CPNE4-211ENST00000514439 GBP4Q96PP9 640 aa9.99□□□□□ -0.81
CPNE4-211ENST00000514439 MYD88Q99836 296 aa9.99□□□□□ -0.81
CPNE4-211ENST00000514439 METTL22Q9BUU2 404 aaPredicted RBP9.99□□□□□ -0.81
CPNE4-211ENST00000514439 PALD1Q9ULE6 856 aa9.99□□□□□ -0.81
CPNE4-211ENST00000514439 PCDH11XQ9BZA7 1347 aa9.99□□□□□ -0.81
CPNE4-211ENST00000514439 PCDH11YQ9BZA8 1340 aa9.99□□□□□ -0.81
CPNE4-211ENST00000514439 KDM4FA0A1W2PPD8 638 aa9.99□□□□□ -0.81
CPNE4-211ENST00000514439 TRAK2O60296 914 aa9.99□□□□□ -0.81
CPNE4-211ENST00000514439 GCKRQ14397 625 aa9.99□□□□□ -0.81
CPNE4-211ENST00000514439 CNTROBQ8N137 903 aa9.99□□□□□ -0.81
CPNE4-211ENST00000514439 GLRX3O76003 335 aaKnown RBP9.98□□□□□ -0.81
CPNE4-211ENST00000514439 SSFA2P28290 1259 aa9.98□□□□□ -0.81
CPNE4-211ENST00000514439 ANAPC15P60006 121 aa9.98□□□□□ -0.81
CPNE4-211ENST00000514439 ANKRD13DQ6ZTN6 518 aa9.98□□□□□ -0.81
CPNE4-211ENST00000514439 ZCRB1Q8TBF4 217 aaKnown RBP9.98□□□□□ -0.81
CPNE4-211ENST00000514439 SGSM2O43147 1006 aa9.98□□□□□ -0.81
CPNE4-211ENST00000514439 EPB41L2O43491 1005 aaKnown RBP9.98□□□□□ -0.81
CPNE4-211ENST00000514439 IFIT2P09913 472 aaKnown RBP9.98□□□□□ -0.81
CPNE4-211ENST00000514439 NEK4P51957 841 aa9.98□□□□□ -0.81
CPNE4-211ENST00000514439 SASH1O94885 1247 aa9.97□□□□□ -0.81
CPNE4-211ENST00000514439 AACSQ86V21 672 aa9.97□□□□□ -0.81
CPNE4-211ENST00000514439 IL17RAQ96F46 866 aa9.97□□□□□ -0.81
CPNE4-211ENST00000514439 ECHDC1Q9NTX5 307 aa9.97□□□□□ -0.81
CPNE4-211ENST00000514439 ABCA3Q99758 1704 aa9.97□□□□□ -0.81
CPNE4-211ENST00000514439 G3BP1Q13283 466 aaKnown RBP eCLIP9.96□□□□□ -0.81
CPNE4-211ENST00000514439 EPHA10Q5JZY3 1008 aa9.96□□□□□ -0.81
CPNE4-211ENST00000514439 ZGPATQ8N5A5 531 aaKnown RBP9.96□□□□□ -0.81
CPNE4-211ENST00000514439 GPATCH3Q96I76 525 aa9.96□□□□□ -0.81
CPNE4-211ENST00000514439 CARD10Q9BWT7 1032 aa9.96□□□□□ -0.81
CPNE4-211ENST00000514439 GZF1Q9H116 711 aaPredicted RBP9.96□□□□□ -0.81
CPNE4-211ENST00000514439 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP9.96□□□□□ -0.81
CPNE4-211ENST00000514439 RAD50Q92878 1312 aa9.96□□□□□ -0.81
CPNE4-211ENST00000514439 AK9Q5TCS8 1911 aa9.96□□□□□ -0.82
CPNE4-211ENST00000514439 IL2RBP14784 551 aa9.96□□□□□ -0.82
CPNE4-211ENST00000514439 SIL1Q9H173 461 aa9.96□□□□□ -0.82
CPNE4-211ENST00000514439 CWC22Q9HCG8 908 aaKnown RBP9.96□□□□□ -0.82
CPNE4-211ENST00000514439 BRPF3Q9ULD4 1205 aa9.96□□□□□ -0.82
CPNE4-211ENST00000514439 LAMB4A4D0S4 1761 aa9.96□□□□□ -0.82
CPNE4-211ENST00000514439 ERVV-2B6SEH9 535 aa9.95□□□□□ -0.82
CPNE4-211ENST00000514439 HSPA4P34932 840 aa9.95□□□□□ -0.82
CPNE4-211ENST00000514439 CLEC17AQ6ZS10 378 aa9.95□□□□□ -0.82
CPNE4-211ENST00000514439 KLHDC4Q8TBB5 520 aa9.95□□□□□ -0.82
CPNE4-211ENST00000514439 EAF2Q96CJ1 260 aaPredicted RBP9.95□□□□□ -0.82
CPNE4-211ENST00000514439 STRN4Q9NRL3 753 aa9.95□□□□□ -0.82
CPNE4-211ENST00000514439 CYP2E1P05181 493 aaPredicted RBP9.95□□□□□ -0.82
CPNE4-211ENST00000514439 MCM2P49736 904 aa9.95□□□□□ -0.82
CPNE4-211ENST00000514439 NUCB2P80303 420 aa9.95□□□□□ -0.82
CPNE4-211ENST00000514439 NKX1-1Q15270 411 aaPredicted RBP9.95□□□□□ -0.82
CPNE4-211ENST00000514439 CWC27Q6UX04 472 aaKnown RBP9.95□□□□□ -0.82
CPNE4-211ENST00000514439 PLBD2Q8NHP8 589 aa9.95□□□□□ -0.82
CPNE4-211ENST00000514439 JARID2Q92833 1246 aaPredicted RBP9.95□□□□□ -0.82
CPNE4-211ENST00000514439 TMX3Q96JJ7 454 aa9.95□□□□□ -0.82
CPNE4-211ENST00000514439 LSG1Q9H089 658 aaKnown RBP9.95□□□□□ -0.82
CPNE4-211ENST00000514439 ERBB4Q15303 1308 aa9.95□□□□□ -0.82
CPNE4-211ENST00000514439 ARFGEF2Q9Y6D5 1785 aa9.94□□□□□ -0.82
CPNE4-211ENST00000514439 NBPF26B4DH59 902 aa9.94□□□□□ -0.82
CPNE4-211ENST00000514439 ATP5J2-PTCD1G3V325 749 aa9.94□□□□□ -0.82
CPNE4-211ENST00000514439 PTCD1O75127 700 aaKnown RBP9.94□□□□□ -0.82
CPNE4-211ENST00000514439 PKP1Q13835 747 aa9.94□□□□□ -0.82
CPNE4-211ENST00000514439 NBPF14Q5TI25 921 aa9.94□□□□□ -0.82
CPNE4-211ENST00000514439 NBPF10Q6P3W6 841 aaKnown RBP9.94□□□□□ -0.82
CPNE4-211ENST00000514439 UBE3BQ7Z3V4 1068 aa9.94□□□□□ -0.82
CPNE4-211ENST00000514439 NBPF15Q8N660 670 aa9.94□□□□□ -0.82
CPNE4-211ENST00000514439 DDX54Q8TDD1 881 aaKnown RBP9.94□□□□□ -0.82
CPNE4-211ENST00000514439 UPF3BQ9BZI7 483 aaKnown RBP9.94□□□□□ -0.82
CPNE4-211ENST00000514439 DIAPH3Q9NSV4 1193 aa9.94□□□□□ -0.82
CPNE4-211ENST00000514439 TLR7Q9NYK1 1049 aaKnown RBP9.94□□□□□ -0.82
CPNE4-211ENST00000514439 KCPQ6ZWJ8 1503 aa9.94□□□□□ -0.82
CPNE4-211ENST00000514439 BAG4O95429 457 aaKnown RBP9.94□□□□□ -0.82
CPNE4-211ENST00000514439 PTMSP20962 102 aa9.94□□□□□ -0.82
CPNE4-211ENST00000514439 CACNB1Q02641 598 aaPredicted RBP9.94□□□□□ -0.82
CPNE4-211ENST00000514439 CCDC8Q9H0W5 538 aaPredicted RBP9.94□□□□□ -0.82
CPNE4-211ENST00000514439 COL15A1P39059 1388 aa9.94□□□□□ -0.82
CPNE4-211ENST00000514439 A0A087WZG4 1122 aa9.93□□□□□ -0.82
CPNE4-211ENST00000514439 KIAA1211Q6ZU35 1233 aa9.93□□□□□ -0.82
CPNE4-211ENST00000514439 NOL8Q76FK4 1167 aaKnown RBP9.93□□□□□ -0.82
CPNE4-211ENST00000514439 IL27Q8NEV9 243 aa9.93□□□□□ -0.82
CPNE4-211ENST00000514439 EVI5LQ96CN4 794 aa9.93□□□□□ -0.82
CPNE4-211ENST00000514439 NHSL1Q5SYE7 1610 aa9.93□□□□□ -0.82
CPNE4-211ENST00000514439 UBR2Q8IWV8 1755 aa9.93□□□□□ -0.82
CPNE4-211ENST00000514439 SHANK3Q9BYB0 1731 aa9.93□□□□□ -0.82
CPNE4-211ENST00000514439 PAPPAQ13219 1627 aa9.93□□□□□ -0.82
CPNE4-211ENST00000514439 FSD2A1L4K1 749 aa9.93□□□□□ -0.82
Retrieved 100 of 20,778 RNA–protein pairs in 28 ms