RNA–Protein interactions for RNA: ENST00000514308.3

PDLIM3-210, Transcript of PDZ and LIM domain 3, humanhuman

TSL 2

Gene PDLIM3, Length 906 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PDLIM3-210ENST00000514308 KIF6Q6ZMV9 814 aa17.25■□□□□ 0.35
PDLIM3-210ENST00000514308 NGEFQ8N5V2 710 aa17.25■□□□□ 0.35
PDLIM3-210ENST00000514308 ATP10DQ9P241 1426 aa17.24■□□□□ 0.35
PDLIM3-210ENST00000514308 CHL1O00533 1208 aa17.24■□□□□ 0.35
PDLIM3-210ENST00000514308 MYL6BP14649 208 aa17.24■□□□□ 0.35
PDLIM3-210ENST00000514308 NBPF5PQ86XG9 351 aaPredicted RBP17.24■□□□□ 0.35
PDLIM3-210ENST00000514308 NIP7Q9Y221 180 aaKnown RBP eCLIP17.24■□□□□ 0.35
PDLIM3-210ENST00000514308 LAS1LQ9Y4W2 734 aaKnown RBP17.24■□□□□ 0.35
PDLIM3-210ENST00000514308 LAMB4A4D0S4 1761 aa17.23■□□□□ 0.35
PDLIM3-210ENST00000514308 APAF1O14727 1248 aa17.23■□□□□ 0.35
PDLIM3-210ENST00000514308 TTLL6Q8N841 843 aa17.23■□□□□ 0.35
PDLIM3-210ENST00000514308 ADCY9O60503 1353 aa17.23■□□□□ 0.35
PDLIM3-210ENST00000514308 AFDNP55196 1824 aaKnown RBP17.22■□□□□ 0.35
PDLIM3-210ENST00000514308 ERVV-1B6SEH8 477 aa17.22■□□□□ 0.35
PDLIM3-210ENST00000514308 EIF2S2P20042 333 aaKnown RBP17.22■□□□□ 0.35
PDLIM3-210ENST00000514308 TPTE2Q6XPS3 522 aa17.22■□□□□ 0.35
PDLIM3-210ENST00000514308 CCDC24Q8N4L8 307 aa17.22■□□□□ 0.35
PDLIM3-210ENST00000514308 MAP3K15Q6ZN16 1313 aa17.21■□□□□ 0.35
PDLIM3-210ENST00000514308 BCORQ6W2J9 1755 aa17.21■□□□□ 0.35
PDLIM3-210ENST00000514308 CALD1Q05682 793 aaKnown RBP17.21■□□□□ 0.35
PDLIM3-210ENST00000514308 HLFQ16534 295 aa17.21■□□□□ 0.35
PDLIM3-210ENST00000514308 CFAP44Q96MT7 982 aa17.21■□□□□ 0.35
PDLIM3-210ENST00000514308 GPBP1L1Q9HC44 474 aaPredicted RBP17.21■□□□□ 0.35
PDLIM3-210ENST00000514308 BRCA1P38398 1863 aaKnown RBP17.2■□□□□ 0.34
PDLIM3-210ENST00000514308 ZNF622Q969S3 477 aaKnown RBP eCLIP17.2■□□□□ 0.34
PDLIM3-210ENST00000514308 GTF2E1P29083 439 aaPredicted RBP17.19■□□□□ 0.34
PDLIM3-210ENST00000514308 TTLL7Q6ZT98 887 aa17.19■□□□□ 0.34
PDLIM3-210ENST00000514308 ZNF526Q8TF50 670 aaPredicted RBP17.19■□□□□ 0.34
PDLIM3-210ENST00000514308 ZBTB3Q9H5J0 574 aa17.19■□□□□ 0.34
PDLIM3-210ENST00000514308 FAM177BA6PVY3 158 aa17.18■□□□□ 0.34
PDLIM3-210ENST00000514308 CCDC184Q52MB2 194 aa17.18■□□□□ 0.34
PDLIM3-210ENST00000514308 MRS2Q9HD23 443 aa17.18■□□□□ 0.34
PDLIM3-210ENST00000514308 HOXB7P09629 217 aa17.17■□□□□ 0.34
PDLIM3-210ENST00000514308 PDIA6Q15084 440 aa17.17■□□□□ 0.34
PDLIM3-210ENST00000514308 C9orf131Q5VYM1 1079 aa17.17■□□□□ 0.34
PDLIM3-210ENST00000514308 STYK1Q6J9G0 422 aa17.17■□□□□ 0.34
PDLIM3-210ENST00000514308 NECTIN2Q92692 538 aa17.17■□□□□ 0.34
PDLIM3-210ENST00000514308 CNKSR1Q969H4 720 aa17.17■□□□□ 0.34
PDLIM3-210ENST00000514308 NYXQ9GZU5 481 aa17.17■□□□□ 0.34
PDLIM3-210ENST00000514308 ARFGEF1Q9Y6D6 1849 aa17.17■□□□□ 0.34
PDLIM3-210ENST00000514308 SRGNP10124 158 aa17.16■□□□□ 0.34
PDLIM3-210ENST00000514308 C1QTNF8P60827 252 aa17.16■□□□□ 0.34
PDLIM3-210ENST00000514308 GNAI1P63096 354 aa17.16■□□□□ 0.34
PDLIM3-210ENST00000514308 KRT24Q2M2I5 525 aa17.16■□□□□ 0.34
PDLIM3-210ENST00000514308 MASTLQ96GX5 879 aa17.16■□□□□ 0.34
PDLIM3-210ENST00000514308 IFT57Q9NWB7 429 aa17.16■□□□□ 0.34
PDLIM3-210ENST00000514308 ANXA1P04083 346 aa17.15■□□□□ 0.34
PDLIM3-210ENST00000514308 GPTP24298 496 aa17.15■□□□□ 0.34
PDLIM3-210ENST00000514308 PROSER3Q2NL68 480 aa17.15■□□□□ 0.34
PDLIM3-210ENST00000514308 HDGFL1Q5TGJ6 251 aa17.15■□□□□ 0.34
PDLIM3-210ENST00000514308 GIGYF2Q6Y7W6 1299 aaKnown RBP17.15■□□□□ 0.34
PDLIM3-210ENST00000514308 LRP10Q7Z4F1 713 aa17.15■□□□□ 0.34
PDLIM3-210ENST00000514308 DDX21Q9NR30 783 aaKnown RBP eCLIP17.15■□□□□ 0.34
PDLIM3-210ENST00000514308 MBIPQ9NS73 344 aa17.15■□□□□ 0.34
PDLIM3-210ENST00000514308 RNF181Q9P0P0 153 aa17.15■□□□□ 0.34
PDLIM3-210ENST00000514308 ZNF853P0CG23 659 aa17.14■□□□□ 0.33
PDLIM3-210ENST00000514308 DLEC1Q9Y238 1755 aa17.14■□□□□ 0.33
PDLIM3-210ENST00000514308 KLRG2A4D1S0 409 aaPredicted RBP17.13■□□□□ 0.33
PDLIM3-210ENST00000514308 C21orf2O43822 256 aa17.13■□□□□ 0.33
PDLIM3-210ENST00000514308 NPR1P16066 1061 aa17.13■□□□□ 0.33
PDLIM3-210ENST00000514308 LMNB1P20700 586 aa17.13■□□□□ 0.33
PDLIM3-210ENST00000514308 AIMP1Q12904 312 aaKnown RBP17.13■□□□□ 0.33
PDLIM3-210ENST00000514308 DUSP27Q5VZP5 1158 aa17.13■□□□□ 0.33
PDLIM3-210ENST00000514308 PRPF40BQ6NWY9 871 aaKnown RBP17.13■□□□□ 0.33
PDLIM3-210ENST00000514308 COPS6Q7L5N1 327 aa17.13■□□□□ 0.33
PDLIM3-210ENST00000514308 ZNF34Q8IZ26 560 aa17.13■□□□□ 0.33
PDLIM3-210ENST00000514308 XAGE3Q8WTP9 111 aa17.13■□□□□ 0.33
PDLIM3-210ENST00000514308 CHPF2Q9P2E5 772 aa17.13■□□□□ 0.33
PDLIM3-210ENST00000514308 DBF4Q9UBU7 674 aaPredicted RBP17.13■□□□□ 0.33
PDLIM3-210ENST00000514308 IBTKQ9P2D0 1353 aaPredicted RBP17.13■□□□□ 0.33
PDLIM3-210ENST00000514308 ANKRD31Q8N7Z5 1873 aa17.12■□□□□ 0.33
PDLIM3-210ENST00000514308 RASSF7Q02833 373 aa17.12■□□□□ 0.33
PDLIM3-210ENST00000514308 PARP10Q53GL7 1025 aa17.12■□□□□ 0.33
PDLIM3-210ENST00000514308 HSP90AB3PQ58FF7 597 aa17.12■□□□□ 0.33
PDLIM3-210ENST00000514308 SOGA3Q5TF21 947 aa17.12■□□□□ 0.33
PDLIM3-210ENST00000514308 ZNF219Q9P2Y4 722 aaPredicted RBP17.12■□□□□ 0.33
PDLIM3-210ENST00000514308 UBN2Q6ZU65 1347 aa17.12■□□□□ 0.33
PDLIM3-210ENST00000514308 CCDC27Q2M243 656 aa17.11■□□□□ 0.33
PDLIM3-210ENST00000514308 PPP1R42Q7Z4L9 355 aa17.11■□□□□ 0.33
PDLIM3-210ENST00000514308 NUTM1Q86Y26 1132 aa17.11■□□□□ 0.33
PDLIM3-210ENST00000514308 NFKBIEO00221 500 aa17.1■□□□□ 0.33
PDLIM3-210ENST00000514308 ERFEQ4G0M1 354 aa17.1■□□□□ 0.33
PDLIM3-210ENST00000514308 SUSD4Q5VX71 490 aa17.1■□□□□ 0.33
PDLIM3-210ENST00000514308 CHMP4AQ9BY43 222 aa17.1■□□□□ 0.33
PDLIM3-210ENST00000514308 HYPKQ9NX55 129 aa17.1■□□□□ 0.33
PDLIM3-210ENST00000514308 ZC3H4Q9UPT8 1303 aaKnown RBP17.1■□□□□ 0.33
PDLIM3-210ENST00000514308 COL11A2P13942 1736 aaPredicted RBP17.1■□□□□ 0.33
PDLIM3-210ENST00000514308 ALDH1B1P30837 517 aa17.09■□□□□ 0.33
PDLIM3-210ENST00000514308 KDM2BQ8NHM5 1336 aa17.09■□□□□ 0.33
PDLIM3-210ENST00000514308 ABCC12Q96J65 1359 aa17.09■□□□□ 0.33
PDLIM3-210ENST00000514308 NTSR2O95665 410 aa17.08■□□□□ 0.32
PDLIM3-210ENST00000514308 CRY2Q49AN0 593 aa17.08■□□□□ 0.32
PDLIM3-210ENST00000514308 NCBP3Q53F19 620 aaKnown RBP17.08■□□□□ 0.32
PDLIM3-210ENST00000514308 WWC1Q8IX03 1113 aa17.08■□□□□ 0.32
PDLIM3-210ENST00000514308 RPGRQ92834 1020 aaKnown RBP17.08■□□□□ 0.32
PDLIM3-210ENST00000514308 UTP14AQ9BVJ6 771 aaKnown RBP17.08■□□□□ 0.32
PDLIM3-210ENST00000514308 TAOK3Q9H2K8 898 aa17.08■□□□□ 0.32
PDLIM3-210ENST00000514308 RIC1Q4ADV7 1423 aa17.07■□□□□ 0.32
PDLIM3-210ENST00000514308 RNF123Q5XPI4 1314 aa17.07■□□□□ 0.32
PDLIM3-210ENST00000514308 ELL2O00472 640 aaPredicted RBP17.07■□□□□ 0.32
Retrieved 100 of 20,778 RNA–protein pairs in 26.4 ms