RNA–Protein interactions for RNA: ENST00000513988.1

CLDND1-229, Transcript of claudin domain containing 1, humanhuman

TSL 2

Gene CLDND1, Length 598 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLDND1-229ENST00000513988 SLC4A9Q96Q91 983 aa10.98□□□□□ -0.65
CLDND1-229ENST00000513988 ZIC5Q96T25 663 aa10.98□□□□□ -0.65
CLDND1-229ENST00000513988 INSRP06213 1382 aa10.98□□□□□ -0.65
CLDND1-229ENST00000513988 SBNO2Q9Y2G9 1366 aa10.98□□□□□ -0.65
CLDND1-229ENST00000513988 ZNF831Q5JPB2 1677 aa10.98□□□□□ -0.65
CLDND1-229ENST00000513988 ZPR1O75312 459 aa10.97□□□□□ -0.65
CLDND1-229ENST00000513988 TRPA1O75762 1119 aa10.97□□□□□ -0.65
CLDND1-229ENST00000513988 CELF2O95319 508 aaKnown RBP10.97□□□□□ -0.65
CLDND1-229ENST00000513988 SOGA3Q5TF21 947 aa10.97□□□□□ -0.65
CLDND1-229ENST00000513988 NRXN2Q9P2S2 1712 aa10.96□□□□□ -0.65
CLDND1-229ENST00000513988 SERPINB2P05120 415 aa10.96□□□□□ -0.65
CLDND1-229ENST00000513988 LMOD1P29536 600 aaPredicted RBP10.96□□□□□ -0.65
CLDND1-229ENST00000513988 NFIXQ14938 502 aa10.96□□□□□ -0.65
CLDND1-229ENST00000513988 CARMIL3Q8ND23 1372 aa10.95□□□□□ -0.66
CLDND1-229ENST00000513988 CRKLP46109 303 aaKnown RBP10.95□□□□□ -0.66
CLDND1-229ENST00000513988 USPL1Q5W0Q7 1092 aa10.95□□□□□ -0.66
CLDND1-229ENST00000513988 PPARGC1BQ86YN6 1023 aaKnown RBP10.95□□□□□ -0.66
CLDND1-229ENST00000513988 RNF186Q9NXI6 227 aa10.95□□□□□ -0.66
CLDND1-229ENST00000513988 PDZRN3Q9UPQ7 1066 aa10.95□□□□□ -0.66
CLDND1-229ENST00000513988 GPC2Q8N158 579 aa10.94□□□□□ -0.66
CLDND1-229ENST00000513988 MPNDQ8N594 471 aa10.94□□□□□ -0.66
CLDND1-229ENST00000513988 HDAC9Q9UKV0 1011 aa10.94□□□□□ -0.66
CLDND1-229ENST00000513988 SPG7Q9UQ90 795 aa10.94□□□□□ -0.66
CLDND1-229ENST00000513988 RTL1A6NKG5 1358 aa10.93□□□□□ -0.66
CLDND1-229ENST00000513988 ZNF408Q9H9D4 720 aa10.93□□□□□ -0.66
CLDND1-229ENST00000513988 EDC4Q6P2E9 1401 aaKnown RBP10.92□□□□□ -0.66
CLDND1-229ENST00000513988 AKAP11Q9UKA4 1901 aa10.92□□□□□ -0.66
CLDND1-229ENST00000513988 PDE6BP35913 854 aa10.92□□□□□ -0.66
CLDND1-229ENST00000513988 HDGFL2Q7Z4V5 671 aaPredicted RBP10.92□□□□□ -0.66
CLDND1-229ENST00000513988 SYNE4Q8N205 404 aa10.92□□□□□ -0.66
CLDND1-229ENST00000513988 ZNF277Q9NRM2 450 aaPredicted RBP10.92□□□□□ -0.66
CLDND1-229ENST00000513988 SCN11AQ9UI33 1791 aa10.91□□□□□ -0.66
CLDND1-229ENST00000513988 PRPF40BQ6NWY9 871 aaKnown RBP10.91□□□□□ -0.66
CLDND1-229ENST00000513988 FBXO46Q6PJ61 603 aaPredicted RBP10.91□□□□□ -0.66
CLDND1-229ENST00000513988 USP50Q70EL3 339 aaPredicted RBP10.91□□□□□ -0.66
CLDND1-229ENST00000513988 CNKSR1Q969H4 720 aa10.91□□□□□ -0.66
CLDND1-229ENST00000513988 COL25A1Q9BXS0 654 aaPredicted RBP10.91□□□□□ -0.66
CLDND1-229ENST00000513988 GJA3Q9Y6H8 435 aa10.91□□□□□ -0.66
CLDND1-229ENST00000513988 SLX4Q8IY92 1834 aa10.91□□□□□ -0.66
CLDND1-229ENST00000513988 COL11A2P13942 1736 aaPredicted RBP10.9□□□□□ -0.66
CLDND1-229ENST00000513988 CACNA1SQ13698 1873 aa10.9□□□□□ -0.66
CLDND1-229ENST00000513988 FZD9O00144 591 aa10.9□□□□□ -0.66
CLDND1-229ENST00000513988 FBLN1P23142 703 aa10.9□□□□□ -0.66
CLDND1-229ENST00000513988 EPS15P42566 896 aa10.9□□□□□ -0.66
CLDND1-229ENST00000513988 HUNKP57058 714 aa10.9□□□□□ -0.66
CLDND1-229ENST00000513988 KIF23Q02241 960 aaPredicted RBP10.9□□□□□ -0.66
CLDND1-229ENST00000513988 FKBP4Q02790 459 aaKnown RBP eCLIP10.9□□□□□ -0.66
CLDND1-229ENST00000513988 CCDC93Q567U6 631 aa10.9□□□□□ -0.66
CLDND1-229ENST00000513988 COG3Q96JB2 828 aa10.9□□□□□ -0.66
CLDND1-229ENST00000513988 RANBP2P49792 3224 aaKnown RBP10.89□□□□□ -0.67
CLDND1-229ENST00000513988 POTEFA5A3E0 1075 aa10.89□□□□□ -0.67
CLDND1-229ENST00000513988 OTUD5Q96G74 571 aa10.89□□□□□ -0.67
CLDND1-229ENST00000513988 BRIP1Q9BX63 1249 aa10.89□□□□□ -0.67
CLDND1-229ENST00000513988 GLIS2Q9BZE0 524 aaPredicted RBP10.89□□□□□ -0.67
CLDND1-229ENST00000513988 ANKRD31Q8N7Z5 1873 aa10.89□□□□□ -0.67
CLDND1-229ENST00000513988 UNC80Q8N2C7 3258 aa10.89□□□□□ -0.67
CLDND1-229ENST00000513988 PTCD1O75127 700 aaKnown RBP10.88□□□□□ -0.67
CLDND1-229ENST00000513988 IFNL2Q8IZJ0 200 aa10.88□□□□□ -0.67
CLDND1-229ENST00000513988 KIAA0100Q14667 2235 aaKnown RBP10.88□□□□□ -0.67
CLDND1-229ENST00000513988 FAM155AB1AL88 458 aaPredicted RBP10.87□□□□□ -0.67
CLDND1-229ENST00000513988 PHKG2P15735 406 aa10.87□□□□□ -0.67
CLDND1-229ENST00000513988 SCNN1DP51172 638 aa10.87□□□□□ -0.67
CLDND1-229ENST00000513988 EIF6P56537 245 aaKnown RBP10.87□□□□□ -0.67
CLDND1-229ENST00000513988 RRS1Q15050 365 aaKnown RBP10.87□□□□□ -0.67
CLDND1-229ENST00000513988 STYK1Q6J9G0 422 aa10.87□□□□□ -0.67
CLDND1-229ENST00000513988 RGMBQ6NW40 437 aa10.87□□□□□ -0.67
CLDND1-229ENST00000513988 ZNF579Q8NAF0 562 aaKnown RBP10.87□□□□□ -0.67
CLDND1-229ENST00000513988 TMC1Q8TDI8 760 aa10.87□□□□□ -0.67
CLDND1-229ENST00000513988 CCDC102AQ96A19 550 aa10.87□□□□□ -0.67
CLDND1-229ENST00000513988 NARFQ9UHQ1 456 aa10.87□□□□□ -0.67
CLDND1-229ENST00000513988 ARFGEF2Q9Y6D5 1785 aa10.86□□□□□ -0.67
CLDND1-229ENST00000513988 H0YGN5 161 aa10.86□□□□□ -0.67
CLDND1-229ENST00000513988 IARSP41252 1262 aaKnown RBP10.86□□□□□ -0.67
CLDND1-229ENST00000513988 INTS5Q6P9B9 1019 aaKnown RBP10.86□□□□□ -0.67
CLDND1-229ENST00000513988 ZNF296Q8WUU4 475 aaPredicted RBP10.86□□□□□ -0.67
CLDND1-229ENST00000513988 JDP2Q8WYK2 163 aa10.86□□□□□ -0.67
CLDND1-229ENST00000513988 PRDM6Q9NQX0 595 aa10.86□□□□□ -0.67
CLDND1-229ENST00000513988 INTS3Q68E01 1043 aaKnown RBP10.85□□□□□ -0.67
CLDND1-229ENST00000513988 CCDC24Q8N4L8 307 aa10.85□□□□□ -0.67
CLDND1-229ENST00000513988 PHF12Q96QT6 1004 aa10.85□□□□□ -0.67
CLDND1-229ENST00000513988 TERF2IPQ9NYB0 399 aa10.85□□□□□ -0.67
CLDND1-229ENST00000513988 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP10.85□□□□□ -0.67
CLDND1-229ENST00000513988 BCORQ6W2J9 1755 aa10.85□□□□□ -0.67
CLDND1-229ENST00000513988 SOS1Q07889 1333 aaPredicted RBP10.84□□□□□ -0.67
CLDND1-229ENST00000513988 ERVV-2B6SEH9 535 aa10.84□□□□□ -0.67
CLDND1-229ENST00000513988 ZNF157P51786 506 aaPredicted RBP10.84□□□□□ -0.67
CLDND1-229ENST00000513988 HSP90AB2PQ58FF8 381 aa10.84□□□□□ -0.67
CLDND1-229ENST00000513988 RTKN2Q8IZC4 609 aa10.84□□□□□ -0.67
CLDND1-229ENST00000513988 C7orf43Q8WVR3 580 aa10.84□□□□□ -0.67
CLDND1-229ENST00000513988 MASTLQ96GX5 879 aa10.84□□□□□ -0.67
CLDND1-229ENST00000513988 CSRNP1Q96S65 589 aa10.84□□□□□ -0.67
CLDND1-229ENST00000513988 BCL2L12Q9HB09 334 aa10.84□□□□□ -0.67
CLDND1-229ENST00000513988 ADARB2Q9NS39 739 aaKnown RBP10.84□□□□□ -0.67
CLDND1-229ENST00000513988 RBM27Q9P2N5 1060 aaKnown RBP10.84□□□□□ -0.67
CLDND1-229ENST00000513988 PAPPA2Q9BXP8 1791 aa10.83□□□□□ -0.68
CLDND1-229ENST00000513988 A0A1W2PP64 1363 aa10.83□□□□□ -0.68
CLDND1-229ENST00000513988 COL15A1P39059 1388 aa10.83□□□□□ -0.68
CLDND1-229ENST00000513988 NPHP1O15259 732 aa10.83□□□□□ -0.68
CLDND1-229ENST00000513988 SRGNP10124 158 aa10.83□□□□□ -0.68
CLDND1-229ENST00000513988 PRR5LQ6MZQ0 368 aa10.83□□□□□ -0.68
Retrieved 100 of 20,778 RNA–protein pairs in 24.9 ms