RNA–Protein interactions for RNA: ENST00000509454.5

LIMCH1-210, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 1 (best) BASIC

Gene LIMCH1, Length 1,506 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-210ENST00000509454 CDCA7LQ96GN5 454 aa14.71□□□□□ -0.06
LIMCH1-210ENST00000509454 SGIP1Q9BQI5 828 aa14.71□□□□□ -0.06
LIMCH1-210ENST00000509454 STK31Q9BXU1 1019 aa14.71□□□□□ -0.06
LIMCH1-210ENST00000509454 ZBTB3Q9H5J0 574 aa14.71□□□□□ -0.06
LIMCH1-210ENST00000509454 ZNF652Q9Y2D9 606 aa14.71□□□□□ -0.06
LIMCH1-210ENST00000509454 NPHP1O15259 732 aa14.7□□□□□ -0.06
LIMCH1-210ENST00000509454 CAMTA2O94983 1202 aa14.7□□□□□ -0.06
LIMCH1-210ENST00000509454 PDIA6Q15084 440 aa14.7□□□□□ -0.06
LIMCH1-210ENST00000509454 TTLL7Q6ZT98 887 aa14.7□□□□□ -0.06
LIMCH1-210ENST00000509454 XAGE3Q8WTP9 111 aa14.7□□□□□ -0.06
LIMCH1-210ENST00000509454 SLFN5Q08AF3 891 aa14.69□□□□□ -0.06
LIMCH1-210ENST00000509454 COPS6Q7L5N1 327 aa14.69□□□□□ -0.06
LIMCH1-210ENST00000509454 BCL2L12Q9HB09 334 aa14.69□□□□□ -0.06
LIMCH1-210ENST00000509454 HYPKQ9NX55 129 aa14.69□□□□□ -0.06
LIMCH1-210ENST00000509454 MAP3K15Q6ZN16 1313 aa14.68□□□□□ -0.06
LIMCH1-210ENST00000509454 SCN7AQ01118 1682 aa14.68□□□□□ -0.06
LIMCH1-210ENST00000509454 NFIXQ14938 502 aa14.68□□□□□ -0.06
LIMCH1-210ENST00000509454 TBC1D9BQ66K14 1250 aa14.68□□□□□ -0.06
LIMCH1-210ENST00000509454 FHDC1Q9C0D6 1143 aaPredicted RBP14.68□□□□□ -0.06
LIMCH1-210ENST00000509454 SETDB2Q96T68 719 aa14.67□□□□□ -0.06
LIMCH1-210ENST00000509454 BCORQ6W2J9 1755 aa14.67□□□□□ -0.06
LIMCH1-210ENST00000509454 FAM177BA6PVY3 158 aa14.66□□□□□ -0.06
LIMCH1-210ENST00000509454 VAMP4O75379 141 aa14.66□□□□□ -0.06
LIMCH1-210ENST00000509454 DDR1Q08345 913 aa14.66□□□□□ -0.06
LIMCH1-210ENST00000509454 HLFQ16534 295 aa14.66□□□□□ -0.06
LIMCH1-210ENST00000509454 NIP7Q9Y221 180 aaKnown RBP eCLIP14.66□□□□□ -0.06
LIMCH1-210ENST00000509454 COL24A1Q17RW2 1714 aa14.66□□□□□ -0.06
LIMCH1-210ENST00000509454 ERVV-1B6SEH8 477 aa14.66□□□□□ -0.06
LIMCH1-210ENST00000509454 TM4SF1P30408 202 aa14.66□□□□□ -0.06
LIMCH1-210ENST00000509454 CLEC4GQ6UXB4 293 aa14.66□□□□□ -0.06
LIMCH1-210ENST00000509454 PHAXQ9H814 394 aaKnown RBP14.66□□□□□ -0.06
LIMCH1-210ENST00000509454 POLRMTO00411 1230 aaKnown RBP14.65□□□□□ -0.06
LIMCH1-210ENST00000509454 SLC4A2P04920 1241 aa14.65□□□□□ -0.06
LIMCH1-210ENST00000509454 SERPINB2P05120 415 aa14.65□□□□□ -0.06
LIMCH1-210ENST00000509454 KCNA4P22459 653 aa14.65□□□□□ -0.06
LIMCH1-210ENST00000509454 GPTP24298 496 aa14.65□□□□□ -0.06
LIMCH1-210ENST00000509454 DDX58O95786 925 aaKnown RBP14.64□□□□□ -0.07
LIMCH1-210ENST00000509454 LRP10Q7Z4F1 713 aa14.64□□□□□ -0.07
LIMCH1-210ENST00000509454 RIC3Q7Z5B4 369 aa14.64□□□□□ -0.07
LIMCH1-210ENST00000509454 NBPF5PQ86XG9 351 aaPredicted RBP14.64□□□□□ -0.07
LIMCH1-210ENST00000509454 YTHDC1Q96MU7 727 aaKnown RBP14.64□□□□□ -0.07
LIMCH1-210ENST00000509454 CARMIL3Q8ND23 1372 aa14.64□□□□□ -0.07
LIMCH1-210ENST00000509454 ZBED9Q6R2W3 1325 aa14.63□□□□□ -0.07
LIMCH1-210ENST00000509454 GTF2E1P29083 439 aaPredicted RBP14.63□□□□□ -0.07
LIMCH1-210ENST00000509454 ANKRD13DQ6ZTN6 518 aa14.63□□□□□ -0.07
LIMCH1-210ENST00000509454 PLBD2Q8NHP8 589 aa14.63□□□□□ -0.07
LIMCH1-210ENST00000509454 SYT17Q9BSW7 474 aa14.63□□□□□ -0.07
LIMCH1-210ENST00000509454 GIGYF2Q6Y7W6 1299 aaKnown RBP14.62□□□□□ -0.07
LIMCH1-210ENST00000509454 CNBD1Q8NA66 436 aa14.62□□□□□ -0.07
LIMCH1-210ENST00000509454 NUP98P52948 1817 aa14.62□□□□□ -0.07
LIMCH1-210ENST00000509454 ST5P78524 1137 aa14.61□□□□□ -0.07
LIMCH1-210ENST00000509454 HSP90AB3PQ58FF7 597 aa14.61□□□□□ -0.07
LIMCH1-210ENST00000509454 PELP1Q8IZL8 1130 aaKnown RBP14.61□□□□□ -0.07
LIMCH1-210ENST00000509454 CCDC24Q8N4L8 307 aa14.61□□□□□ -0.07
LIMCH1-210ENST00000509454 CD2APQ9Y5K6 639 aa14.61□□□□□ -0.07
LIMCH1-210ENST00000509454 RGL2O15211 777 aa14.61□□□□□ -0.07
LIMCH1-210ENST00000509454 FKBP5Q13451 457 aaPredicted RBP14.61□□□□□ -0.07
LIMCH1-210ENST00000509454 G2E3Q7L622 706 aa14.61□□□□□ -0.07
LIMCH1-210ENST00000509454 TRMT2AQ8IZ69 625 aaKnown RBP14.61□□□□□ -0.07
LIMCH1-210ENST00000509454 NLGN2Q8NFZ4 835 aa14.61□□□□□ -0.07
LIMCH1-210ENST00000509454 ZNF428Q96B54 188 aa14.61□□□□□ -0.07
LIMCH1-210ENST00000509454 FLIIQ13045 1269 aa14.6□□□□□ -0.07
LIMCH1-210ENST00000509454 TPTE2Q6XPS3 522 aa14.6□□□□□ -0.07
LIMCH1-210ENST00000509454 BCL2L13Q9BXK5 485 aa14.6□□□□□ -0.07
LIMCH1-210ENST00000509454 WWC3Q9ULE0 1092 aa14.6□□□□□ -0.07
LIMCH1-210ENST00000509454 AFDNP55196 1824 aaKnown RBP14.6□□□□□ -0.07
LIMCH1-210ENST00000509454 ATP10DQ9P241 1426 aa14.59□□□□□ -0.07
LIMCH1-210ENST00000509454 ATP5J2-PTCD1G3V325 749 aa14.59□□□□□ -0.07
LIMCH1-210ENST00000509454 TCIRG1Q13488 830 aa14.59□□□□□ -0.07
LIMCH1-210ENST00000509454 MYD88Q99836 296 aa14.59□□□□□ -0.07
LIMCH1-210ENST00000509454 NYXQ9GZU5 481 aa14.59□□□□□ -0.07
LIMCH1-210ENST00000509454 MAP3K2Q9Y2U5 619 aa14.59□□□□□ -0.07
LIMCH1-210ENST00000509454 C10orf71Q711Q0 1435 aa14.59□□□□□ -0.07
LIMCH1-210ENST00000509454 PI4KAP2A4QPH2 592 aa14.58□□□□□ -0.08
LIMCH1-210ENST00000509454 PARP10Q53GL7 1025 aa14.58□□□□□ -0.08
LIMCH1-210ENST00000509454 PRR5LQ6MZQ0 368 aa14.58□□□□□ -0.08
LIMCH1-210ENST00000509454 PPP1R42Q7Z4L9 355 aa14.58□□□□□ -0.08
LIMCH1-210ENST00000509454 ZNF34Q8IZ26 560 aa14.58□□□□□ -0.08
LIMCH1-210ENST00000509454 PI4KAP1Q8N8J0 262 aa14.58□□□□□ -0.08
LIMCH1-210ENST00000509454 SMC4Q9NTJ3 1288 aa14.58□□□□□ -0.08
LIMCH1-210ENST00000509454 UBN2Q6ZU65 1347 aa14.58□□□□□ -0.08
LIMCH1-210ENST00000509454 CACNA1FO60840 1977 aa14.57□□□□□ -0.08
LIMCH1-210ENST00000509454 A0A0G2JLW4 131 aa14.57□□□□□ -0.08
LIMCH1-210ENST00000509454 CT47B1P0C2W7 299 aaPredicted RBP14.57□□□□□ -0.08
LIMCH1-210ENST00000509454 NEXNQ0ZGT2 675 aa14.57□□□□□ -0.08
LIMCH1-210ENST00000509454 SUSD4Q5VX71 490 aa14.57□□□□□ -0.08
LIMCH1-210ENST00000509454 KSR2Q6VAB6 950 aa14.57□□□□□ -0.08
LIMCH1-210ENST00000509454 NUTM1Q86Y26 1132 aa14.57□□□□□ -0.08
LIMCH1-210ENST00000509454 UTP14AQ9BVJ6 771 aaKnown RBP14.57□□□□□ -0.08
LIMCH1-210ENST00000509454 ARFGEF2Q9Y6D5 1785 aa14.57□□□□□ -0.08
LIMCH1-210ENST00000509454 DPEP1P16444 411 aa14.56□□□□□ -0.08
LIMCH1-210ENST00000509454 SSH1Q8WYL5 1049 aa14.56□□□□□ -0.08
LIMCH1-210ENST00000509454 ANKRD36CQ5JPF3 1778 aa14.56□□□□□ -0.08
LIMCH1-210ENST00000509454 CHRNA5P30532 468 aa14.56□□□□□ -0.08
LIMCH1-210ENST00000509454 TGFB2P61812 414 aa14.56□□□□□ -0.08
LIMCH1-210ENST00000509454 GPR162Q16538 588 aa14.56□□□□□ -0.08
LIMCH1-210ENST00000509454 ERFEQ4G0M1 354 aa14.56□□□□□ -0.08
LIMCH1-210ENST00000509454 NLRP10Q86W26 655 aa14.56□□□□□ -0.08
LIMCH1-210ENST00000509454 C2CD5Q86YS7 1000 aa14.56□□□□□ -0.08
LIMCH1-210ENST00000509454 MRPL50Q8N5N7 158 aaKnown RBP14.56□□□□□ -0.08
Retrieved 100 of 20,778 RNA–protein pairs in 35.4 ms