RNA–Protein interactions for RNA: ENST00000508583.5

NUP54-207, Transcript of nucleoporin 54, humanhuman

TSL 5

Gene NUP54, Length 521 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-207ENST00000508583 CHPF2Q9P2E5 772 aa11.75□□□□□ -0.53
NUP54-207ENST00000508583 SRP68Q9UHB9 627 aaKnown RBP11.75□□□□□ -0.53
NUP54-207ENST00000508583 TBC1D2BQ9UPU7 963 aa11.75□□□□□ -0.53
NUP54-207ENST00000508583 CACNA1FO60840 1977 aa11.75□□□□□ -0.53
NUP54-207ENST00000508583 BCORQ6W2J9 1755 aa11.74□□□□□ -0.53
NUP54-207ENST00000508583 ELL2O00472 640 aaPredicted RBP11.74□□□□□ -0.53
NUP54-207ENST00000508583 CAMTA2O94983 1202 aa11.74□□□□□ -0.53
NUP54-207ENST00000508583 DDX58O95786 925 aaKnown RBP11.74□□□□□ -0.53
NUP54-207ENST00000508583 CT47B1P0C2W7 299 aaPredicted RBP11.74□□□□□ -0.53
NUP54-207ENST00000508583 FKBP8Q14318 412 aa11.74□□□□□ -0.53
NUP54-207ENST00000508583 HSP90AB3PQ58FF7 597 aa11.74□□□□□ -0.53
NUP54-207ENST00000508583 NECTIN2Q92692 538 aa11.74□□□□□ -0.53
NUP54-207ENST00000508583 SETDB2Q96T68 719 aa11.74□□□□□ -0.53
NUP54-207ENST00000508583 MAP3K15Q6ZN16 1313 aa11.74□□□□□ -0.53
NUP54-207ENST00000508583 CARMIL3Q8ND23 1372 aa11.74□□□□□ -0.53
NUP54-207ENST00000508583 NPHP1O15259 732 aa11.73□□□□□ -0.53
NUP54-207ENST00000508583 EXOSC9Q06265 439 aaKnown RBP11.73□□□□□ -0.53
NUP54-207ENST00000508583 SLFN5Q08AF3 891 aa11.73□□□□□ -0.53
NUP54-207ENST00000508583 ZBED9Q6R2W3 1325 aa11.73□□□□□ -0.53
NUP54-207ENST00000508583 CD2APQ9Y5K6 639 aa11.73□□□□□ -0.53
NUP54-207ENST00000508583 PDIA6Q15084 440 aa11.72□□□□□ -0.53
NUP54-207ENST00000508583 KLHL34Q8N239 644 aa11.72□□□□□ -0.53
NUP54-207ENST00000508583 TSPYL6Q8N831 410 aa11.72□□□□□ -0.53
NUP54-207ENST00000508583 ATP10DQ9P241 1426 aa11.71□□□□□ -0.53
NUP54-207ENST00000508583 TM4SF1P30408 202 aa11.71□□□□□ -0.53
NUP54-207ENST00000508583 NFIXQ14938 502 aa11.71□□□□□ -0.53
NUP54-207ENST00000508583 PROSER3Q2NL68 480 aa11.71□□□□□ -0.53
NUP54-207ENST00000508583 COPS6Q7L5N1 327 aa11.71□□□□□ -0.53
NUP54-207ENST00000508583 PLBD2Q8NHP8 589 aa11.71□□□□□ -0.53
NUP54-207ENST00000508583 XAGE3Q8WTP9 111 aa11.71□□□□□ -0.53
NUP54-207ENST00000508583 FHDC1Q9C0D6 1143 aaPredicted RBP11.71□□□□□ -0.53
NUP54-207ENST00000508583 NYXQ9GZU5 481 aa11.71□□□□□ -0.53
NUP54-207ENST00000508583 SPINK5Q9NQ38 1064 aaPredicted RBP11.71□□□□□ -0.53
NUP54-207ENST00000508583 POLRMTO00411 1230 aaKnown RBP11.7□□□□□ -0.54
NUP54-207ENST00000508583 VAMP4O75379 141 aa11.7□□□□□ -0.54
NUP54-207ENST00000508583 ST5P78524 1137 aa11.7□□□□□ -0.54
NUP54-207ENST00000508583 AIMP1Q12904 312 aaKnown RBP11.7□□□□□ -0.54
NUP54-207ENST00000508583 PARP10Q53GL7 1025 aa11.7□□□□□ -0.54
NUP54-207ENST00000508583 TBC1D9BQ66K14 1250 aa11.7□□□□□ -0.54
NUP54-207ENST00000508583 GIGYF2Q6Y7W6 1299 aaKnown RBP11.7□□□□□ -0.54
NUP54-207ENST00000508583 BICDL1Q6ZP65 573 aa11.7□□□□□ -0.54
NUP54-207ENST00000508583 TTLL7Q6ZT98 887 aa11.7□□□□□ -0.54
NUP54-207ENST00000508583 ANKRD13DQ6ZTN6 518 aa11.7□□□□□ -0.54
NUP54-207ENST00000508583 LRP10Q7Z4F1 713 aa11.7□□□□□ -0.54
NUP54-207ENST00000508583 ZBTB3Q9H5J0 574 aa11.7□□□□□ -0.54
NUP54-207ENST00000508583 BCL2L12Q9HB09 334 aa11.7□□□□□ -0.54
NUP54-207ENST00000508583 PDZRN3Q9UPQ7 1066 aa11.7□□□□□ -0.54
NUP54-207ENST00000508583 NIP7Q9Y221 180 aaKnown RBP eCLIP11.7□□□□□ -0.54
NUP54-207ENST00000508583 IBTKQ9P2D0 1353 aaPredicted RBP11.69□□□□□ -0.54
NUP54-207ENST00000508583 ANXA1P04083 346 aa11.69□□□□□ -0.54
NUP54-207ENST00000508583 SERPINB2P05120 415 aa11.69□□□□□ -0.54
NUP54-207ENST00000508583 TPTE2Q6XPS3 522 aa11.69□□□□□ -0.54
NUP54-207ENST00000508583 NBPF5PQ86XG9 351 aaPredicted RBP11.69□□□□□ -0.54
NUP54-207ENST00000508583 TRMT2AQ8IZ69 625 aaKnown RBP11.69□□□□□ -0.54
NUP54-207ENST00000508583 CNBD1Q8NA66 436 aa11.69□□□□□ -0.54
NUP54-207ENST00000508583 NUP98P52948 1817 aa11.69□□□□□ -0.54
NUP54-207ENST00000508583 C10orf71Q711Q0 1435 aa11.69□□□□□ -0.54
NUP54-207ENST00000508583 RNF123Q5XPI4 1314 aa11.68□□□□□ -0.54
NUP54-207ENST00000508583 AFDNP55196 1824 aaKnown RBP11.68□□□□□ -0.54
NUP54-207ENST00000508583 SLC4A2P04920 1241 aa11.68□□□□□ -0.54
NUP54-207ENST00000508583 GTF2E1P29083 439 aaPredicted RBP11.68□□□□□ -0.54
NUP54-207ENST00000508583 TGFB2P61812 414 aa11.68□□□□□ -0.54
NUP54-207ENST00000508583 DDR1Q08345 913 aa11.68□□□□□ -0.54
NUP54-207ENST00000508583 PPP1R42Q7Z4L9 355 aa11.68□□□□□ -0.54
NUP54-207ENST00000508583 RIC3Q7Z5B4 369 aa11.68□□□□□ -0.54
NUP54-207ENST00000508583 SYT17Q9BSW7 474 aa11.68□□□□□ -0.54
NUP54-207ENST00000508583 KIAA1551Q9HCM1 1747 aa11.68□□□□□ -0.54
NUP54-207ENST00000508583 KIF13BQ9NQT8 1826 aa11.67□□□□□ -0.54
NUP54-207ENST00000508583 NRXN2Q9P2S2 1712 aa11.67□□□□□ -0.54
NUP54-207ENST00000508583 HSP90B1P14625 803 aaKnown RBP11.67□□□□□ -0.54
NUP54-207ENST00000508583 NEXNQ0ZGT2 675 aa11.67□□□□□ -0.54
NUP54-207ENST00000508583 TCIRG1Q13488 830 aa11.67□□□□□ -0.54
NUP54-207ENST00000508583 HLFQ16534 295 aa11.67□□□□□ -0.54
NUP54-207ENST00000508583 ALDH1L2Q3SY69 923 aa11.67□□□□□ -0.54
NUP54-207ENST00000508583 CDCA7LQ96GN5 454 aa11.67□□□□□ -0.54
NUP54-207ENST00000508583 ANKRD36CQ5JPF3 1778 aa11.67□□□□□ -0.54
NUP54-207ENST00000508583 PDE6BP35913 854 aa11.66□□□□□ -0.54
NUP54-207ENST00000508583 FLIIQ13045 1269 aa11.66□□□□□ -0.54
NUP54-207ENST00000508583 FKBP5Q13451 457 aaPredicted RBP11.66□□□□□ -0.54
NUP54-207ENST00000508583 KSR2Q6VAB6 950 aa11.66□□□□□ -0.54
NUP54-207ENST00000508583 ZNF34Q8IZ26 560 aa11.66□□□□□ -0.54
NUP54-207ENST00000508583 NLGN2Q8NFZ4 835 aa11.66□□□□□ -0.54
NUP54-207ENST00000508583 BRIP1Q9BX63 1249 aa11.66□□□□□ -0.54
NUP54-207ENST00000508583 N4BP2Q86UW6 1770 aaPredicted RBP11.65□□□□□ -0.54
NUP54-207ENST00000508583 ARFGEF2Q9Y6D5 1785 aa11.65□□□□□ -0.54
NUP54-207ENST00000508583 UTP14AQ9BVJ6 771 aaKnown RBP11.65□□□□□ -0.54
NUP54-207ENST00000508583 PHAXQ9H814 394 aaKnown RBP11.65□□□□□ -0.54
NUP54-207ENST00000508583 PTPRCP08575 1304 aa11.64□□□□□ -0.55
NUP54-207ENST00000508583 GPTP24298 496 aa11.64□□□□□ -0.55
NUP54-207ENST00000508583 TRIM28Q13263 835 aaKnown RBP11.64□□□□□ -0.55
NUP54-207ENST00000508583 PRR5LQ6MZQ0 368 aa11.64□□□□□ -0.55
NUP54-207ENST00000508583 METTL22Q9BUU2 404 aaPredicted RBP11.64□□□□□ -0.55
NUP54-207ENST00000508583 SMC4Q9NTJ3 1288 aa11.64□□□□□ -0.55
NUP54-207ENST00000508583 RIC1Q4ADV7 1423 aa11.63□□□□□ -0.55
NUP54-207ENST00000508583 PI4KAP2A4QPH2 592 aa11.63□□□□□ -0.55
NUP54-207ENST00000508583 H0YIN7 160 aa11.63□□□□□ -0.55
NUP54-207ENST00000508583 TCERG1O14776 1098 aaKnown RBP11.63□□□□□ -0.55
NUP54-207ENST00000508583 NLRP10Q86W26 655 aa11.63□□□□□ -0.55
NUP54-207ENST00000508583 PI4KAP1Q8N8J0 262 aa11.63□□□□□ -0.55
NUP54-207ENST00000508583 CCDC191Q8NCU4 936 aa11.63□□□□□ -0.55
Retrieved 100 of 20,778 RNA–protein pairs in 44.3 ms