RNA–Protein interactions for RNA: ENST00000508319.1

HMGCS1-205, Transcript of 3-hydroxy-3-methylglutaryl-CoA synthase 1, humanhuman

TSL 3

Gene HMGCS1, Length 591 nt, Biotype retained intron, Subcellular localisation Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGCS1-205ENST00000508319 ZC3H4Q9UPT8 1303 aaKnown RBP17.21■□□□□ 0.35
HMGCS1-205ENST00000508319 NFKBIEO00221 500 aa17.21■□□□□ 0.35
HMGCS1-205ENST00000508319 RGL2O15211 777 aa17.21■□□□□ 0.35
HMGCS1-205ENST00000508319 ZNF652Q9Y2D9 606 aa17.21■□□□□ 0.35
HMGCS1-205ENST00000508319 SLX4Q8IY92 1834 aa17.21■□□□□ 0.35
HMGCS1-205ENST00000508319 DICER1Q9UPY3 1922 aaKnown RBP17.2■□□□□ 0.34
HMGCS1-205ENST00000508319 TOMM70O94826 608 aa17.2■□□□□ 0.34
HMGCS1-205ENST00000508319 LMNB1P20700 586 aa17.2■□□□□ 0.34
HMGCS1-205ENST00000508319 EIF4A1P60842 406 aaKnown RBP17.2■□□□□ 0.34
HMGCS1-205ENST00000508319 ST5P78524 1137 aa17.2■□□□□ 0.34
HMGCS1-205ENST00000508319 PNISRQ8TF01 805 aaKnown RBP17.2■□□□□ 0.34
HMGCS1-205ENST00000508319 ZNF622Q969S3 477 aaKnown RBP eCLIP17.2■□□□□ 0.34
HMGCS1-205ENST00000508319 PNNQ9H307 717 aaKnown RBP17.2■□□□□ 0.34
HMGCS1-205ENST00000508319 NUP98P52948 1817 aa17.19■□□□□ 0.34
HMGCS1-205ENST00000508319 DDX10Q13206 875 aaKnown RBP17.19■□□□□ 0.34
HMGCS1-205ENST00000508319 KDM2BQ8NHM5 1336 aa17.19■□□□□ 0.34
HMGCS1-205ENST00000508319 NPHP1O15259 732 aa17.18■□□□□ 0.34
HMGCS1-205ENST00000508319 SRGNP10124 158 aa17.18■□□□□ 0.34
HMGCS1-205ENST00000508319 NBPF5PQ86XG9 351 aaPredicted RBP17.18■□□□□ 0.34
HMGCS1-205ENST00000508319 MYBBP1AQ9BQG0 1328 aaKnown RBP17.18■□□□□ 0.34
HMGCS1-205ENST00000508319 HLFQ16534 295 aa17.17■□□□□ 0.34
HMGCS1-205ENST00000508319 NIP7Q9Y221 180 aaKnown RBP eCLIP17.17■□□□□ 0.34
HMGCS1-205ENST00000508319 C21orf2O43822 256 aa17.16■□□□□ 0.34
HMGCS1-205ENST00000508319 STYK1Q6J9G0 422 aa17.16■□□□□ 0.34
HMGCS1-205ENST00000508319 PRPF40BQ6NWY9 871 aaKnown RBP17.16■□□□□ 0.34
HMGCS1-205ENST00000508319 RBM46Q8TBY0 533 aaKnown RBP17.16■□□□□ 0.34
HMGCS1-205ENST00000508319 CNKSR1Q969H4 720 aa17.15■□□□□ 0.34
HMGCS1-205ENST00000508319 MASTLQ96GX5 879 aa17.15■□□□□ 0.34
HMGCS1-205ENST00000508319 ZNF219Q9P2Y4 722 aaPredicted RBP17.15■□□□□ 0.34
HMGCS1-205ENST00000508319 WDR90Q96KV7 1748 aa17.15■□□□□ 0.34
HMGCS1-205ENST00000508319 LTBP3Q9NS15 1303 aa17.15■□□□□ 0.34
HMGCS1-205ENST00000508319 KLRG2A4D1S0 409 aaPredicted RBP17.14■□□□□ 0.33
HMGCS1-205ENST00000508319 TMPOP42166 694 aaKnown RBP17.14■□□□□ 0.33
HMGCS1-205ENST00000508319 RIPK4P57078 832 aa17.14■□□□□ 0.33
HMGCS1-205ENST00000508319 RRAGCQ9HB90 399 aa17.14■□□□□ 0.33
HMGCS1-205ENST00000508319 TSPYL4Q9UJ04 414 aa17.14■□□□□ 0.33
HMGCS1-205ENST00000508319 GLTPD2A6NH11 291 aa17.13■□□□□ 0.33
HMGCS1-205ENST00000508319 ERVV-1B6SEH8 477 aa17.13■□□□□ 0.33
HMGCS1-205ENST00000508319 TPTE2Q6XPS3 522 aa17.13■□□□□ 0.33
HMGCS1-205ENST00000508319 TTLL7Q6ZT98 887 aa17.13■□□□□ 0.33
HMGCS1-205ENST00000508319 C16orf71Q8IYS4 520 aaPredicted RBP17.13■□□□□ 0.33
HMGCS1-205ENST00000508319 RRP7AQ9Y3A4 280 aaKnown RBP17.13■□□□□ 0.33
HMGCS1-205ENST00000508319 ERBB4Q15303 1308 aa17.13■□□□□ 0.33
HMGCS1-205ENST00000508319 MAP3K15Q6ZN16 1313 aa17.13■□□□□ 0.33
HMGCS1-205ENST00000508319 ABCC12Q96J65 1359 aa17.13■□□□□ 0.33
HMGCS1-205ENST00000508319 NPR1P16066 1061 aa17.12■□□□□ 0.33
HMGCS1-205ENST00000508319 APLP1P51693 650 aa17.12■□□□□ 0.33
HMGCS1-205ENST00000508319 NGEFQ8N5V2 710 aa17.12■□□□□ 0.33
HMGCS1-205ENST00000508319 TAOK3Q9H2K8 898 aa17.12■□□□□ 0.33
HMGCS1-205ENST00000508319 FAM177BA6PVY3 158 aa17.11■□□□□ 0.33
HMGCS1-205ENST00000508319 MYL6BP14649 208 aa17.11■□□□□ 0.33
HMGCS1-205ENST00000508319 LMOD3Q0VAK6 560 aa17.11■□□□□ 0.33
HMGCS1-205ENST00000508319 CCDC146Q8IYE0 955 aa17.11■□□□□ 0.33
HMGCS1-205ENST00000508319 C7orf43Q8WVR3 580 aa17.11■□□□□ 0.33
HMGCS1-205ENST00000508319 IBTKQ9P2D0 1353 aaPredicted RBP17.11■□□□□ 0.33
HMGCS1-205ENST00000508319 RIC1Q4ADV7 1423 aa17.11■□□□□ 0.33
HMGCS1-205ENST00000508319 FSTL1Q12841 308 aa17.1■□□□□ 0.33
HMGCS1-205ENST00000508319 MAPK8IP2Q13387 824 aaPredicted RBP17.1■□□□□ 0.33
HMGCS1-205ENST00000508319 SOGA3Q5TF21 947 aa17.1■□□□□ 0.33
HMGCS1-205ENST00000508319 KIF6Q6ZMV9 814 aa17.1■□□□□ 0.33
HMGCS1-205ENST00000508319 LRP10Q7Z4F1 713 aa17.1■□□□□ 0.33
HMGCS1-205ENST00000508319 ZBTB3Q9H5J0 574 aa17.1■□□□□ 0.33
HMGCS1-205ENST00000508319 BABAM1Q9NWV8 329 aa17.1■□□□□ 0.33
HMGCS1-205ENST00000508319 UBN2Q6ZU65 1347 aa17.1■□□□□ 0.33
HMGCS1-205ENST00000508319 ERFEQ4G0M1 354 aa17.09■□□□□ 0.33
HMGCS1-205ENST00000508319 ANKRD36CQ5JPF3 1778 aa17.08■□□□□ 0.33
HMGCS1-205ENST00000508319 SNED1Q8TER0 1413 aa17.08■□□□□ 0.32
HMGCS1-205ENST00000508319 PDIA6Q15084 440 aa17.08■□□□□ 0.32
HMGCS1-205ENST00000508319 CRY2Q49AN0 593 aa17.08■□□□□ 0.32
HMGCS1-205ENST00000508319 NUTM1Q86Y26 1132 aa17.08■□□□□ 0.32
HMGCS1-205ENST00000508319 NYXQ9GZU5 481 aa17.08■□□□□ 0.32
HMGCS1-205ENST00000508319 POTECB2RU33 542 aa17.07■□□□□ 0.32
HMGCS1-205ENST00000508319 VEGFAP15692 232 aaPredicted RBP17.07■□□□□ 0.32
HMGCS1-205ENST00000508319 GPTP24298 496 aa17.07■□□□□ 0.32
HMGCS1-205ENST00000508319 PROSER3Q2NL68 480 aa17.07■□□□□ 0.32
HMGCS1-205ENST00000508319 CCDC93Q567U6 631 aa17.07■□□□□ 0.32
HMGCS1-205ENST00000508319 OLFM4Q6UX06 510 aa17.07■□□□□ 0.32
HMGCS1-205ENST00000508319 ZNF34Q8IZ26 560 aa17.07■□□□□ 0.32
HMGCS1-205ENST00000508319 RUNDC1Q96C34 613 aa17.07■□□□□ 0.32
HMGCS1-205ENST00000508319 PRKRIP1Q9H875 184 aaPredicted RBP17.07■□□□□ 0.32
HMGCS1-205ENST00000508319 TRIM35Q9UPQ4 493 aa17.07■□□□□ 0.32
HMGCS1-205ENST00000508319 EIF2S2P20042 333 aaKnown RBP17.06■□□□□ 0.32
HMGCS1-205ENST00000508319 GTF2E1P29083 439 aaPredicted RBP17.06■□□□□ 0.32
HMGCS1-205ENST00000508319 WDR43Q15061 677 aaKnown RBP eCLIP17.06■□□□□ 0.32
HMGCS1-205ENST00000508319 NEUROD2Q15784 382 aa17.06■□□□□ 0.32
HMGCS1-205ENST00000508319 GIGYF2Q6Y7W6 1299 aaKnown RBP17.06■□□□□ 0.32
HMGCS1-205ENST00000508319 SMC1BQ8NDV3 1235 aa17.06■□□□□ 0.32
HMGCS1-205ENST00000508319 NTSR2O95665 410 aa17.05■□□□□ 0.32
HMGCS1-205ENST00000508319 ANXA1P04083 346 aa17.05■□□□□ 0.32
HMGCS1-205ENST00000508319 DPY19L2Q6NUT2 758 aa17.05■□□□□ 0.32
HMGCS1-205ENST00000508319 DNAJC5GQ8N7S2 189 aa17.05■□□□□ 0.32
HMGCS1-205ENST00000508319 ADAMTS8Q9UP79 889 aa17.05■□□□□ 0.32
HMGCS1-205ENST00000508319 PCNTO95613 3336 aa17.04■□□□□ 0.32
HMGCS1-205ENST00000508319 CHL1O00533 1208 aa17.04■□□□□ 0.32
HMGCS1-205ENST00000508319 HTRA3P83110 453 aa17.04■□□□□ 0.32
HMGCS1-205ENST00000508319 FKBP4Q02790 459 aaKnown RBP eCLIP17.04■□□□□ 0.32
HMGCS1-205ENST00000508319 KRT24Q2M2I5 525 aa17.04■□□□□ 0.32
HMGCS1-205ENST00000508319 SUSD4Q5VX71 490 aa17.04■□□□□ 0.32
HMGCS1-205ENST00000508319 LAMB2P55268 1798 aa17.03■□□□□ 0.32
HMGCS1-205ENST00000508319 ALDH1B1P30837 517 aa17.03■□□□□ 0.32
Retrieved 100 of 20,778 RNA–protein pairs in 182.4 ms