RNA–Protein interactions for RNA: ENST00000508284.5

SQSTM1-212, Transcript of sequestosome 1, humanhuman

TSL 4

Gene SQSTM1, Length 578 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SQSTM1-212ENST00000508284 NGEFQ8N5V2 710 aa23.6■■□□□ 1.37
SQSTM1-212ENST00000508284 TSPYL4Q9UJ04 414 aa23.6■■□□□ 1.37
SQSTM1-212ENST00000508284 TMPOP42166 694 aaKnown RBP23.59■■□□□ 1.37
SQSTM1-212ENST00000508284 CCDC146Q8IYE0 955 aa23.59■■□□□ 1.37
SQSTM1-212ENST00000508284 RRP7AQ9Y3A4 280 aaKnown RBP23.59■■□□□ 1.37
SQSTM1-212ENST00000508284 NEUROD2Q15784 382 aa23.58■■□□□ 1.37
SQSTM1-212ENST00000508284 NIP7Q9Y221 180 aaKnown RBP eCLIP23.58■■□□□ 1.37
SQSTM1-212ENST00000508284 BCORQ6W2J9 1755 aa23.57■■□□□ 1.36
SQSTM1-212ENST00000508284 RASSF7Q02833 373 aa23.57■■□□□ 1.36
SQSTM1-212ENST00000508284 KDM3BQ7LBC6 1761 aa23.57■■□□□ 1.36
SQSTM1-212ENST00000508284 MYL6BP14649 208 aa23.56■■□□□ 1.36
SQSTM1-212ENST00000508284 FAM177BA6PVY3 158 aa23.55■■□□□ 1.36
SQSTM1-212ENST00000508284 KIF3CO14782 793 aa23.55■■□□□ 1.36
SQSTM1-212ENST00000508284 RGL2O15211 777 aa23.55■■□□□ 1.36
SQSTM1-212ENST00000508284 CCDC184Q52MB2 194 aa23.55■■□□□ 1.36
SQSTM1-212ENST00000508284 TPTE2Q6XPS3 522 aa23.55■■□□□ 1.36
SQSTM1-212ENST00000508284 RUNDC1Q96C34 613 aa23.55■■□□□ 1.36
SQSTM1-212ENST00000508284 ZNF219Q9P2Y4 722 aaPredicted RBP23.55■■□□□ 1.36
SQSTM1-212ENST00000508284 LAMB4A4D0S4 1761 aa23.55■■□□□ 1.36
SQSTM1-212ENST00000508284 DLEC1Q9Y238 1755 aa23.55■■□□□ 1.36
SQSTM1-212ENST00000508284 HLFQ16534 295 aa23.54■■□□□ 1.36
SQSTM1-212ENST00000508284 KIF6Q6ZMV9 814 aa23.54■■□□□ 1.36
SQSTM1-212ENST00000508284 GTF2E1P29083 439 aaPredicted RBP23.53■■□□□ 1.36
SQSTM1-212ENST00000508284 CNKSR1Q969H4 720 aa23.53■■□□□ 1.36
SQSTM1-212ENST00000508284 BABAM1Q9NWV8 329 aa23.53■■□□□ 1.36
SQSTM1-212ENST00000508284 ANKRD31Q8N7Z5 1873 aa23.53■■□□□ 1.36
SQSTM1-212ENST00000508284 C21orf2O43822 256 aa23.52■■□□□ 1.36
SQSTM1-212ENST00000508284 LMNB1P20700 586 aa23.52■■□□□ 1.36
SQSTM1-212ENST00000508284 MASTLQ96GX5 879 aa23.52■■□□□ 1.36
SQSTM1-212ENST00000508284 NMRK2Q9NPI5 230 aa23.52■■□□□ 1.36
SQSTM1-212ENST00000508284 ADAMTS8Q9UP79 889 aa23.52■■□□□ 1.36
SQSTM1-212ENST00000508284 KDM2BQ8NHM5 1336 aa23.52■■□□□ 1.36
SQSTM1-212ENST00000508284 ERVV-1B6SEH8 477 aa23.51■■□□□ 1.35
SQSTM1-212ENST00000508284 SRGNP10124 158 aa23.51■■□□□ 1.35
SQSTM1-212ENST00000508284 EIF2S2P20042 333 aaKnown RBP23.51■■□□□ 1.35
SQSTM1-212ENST00000508284 STYK1Q6J9G0 422 aa23.51■■□□□ 1.35
SQSTM1-212ENST00000508284 ERBB4Q15303 1308 aa23.5■■□□□ 1.35
SQSTM1-212ENST00000508284 MAP3K15Q6ZN16 1313 aa23.5■■□□□ 1.35
SQSTM1-212ENST00000508284 TTLL7Q6ZT98 887 aa23.49■■□□□ 1.35
SQSTM1-212ENST00000508284 C16orf71Q8IYS4 520 aaPredicted RBP23.49■■□□□ 1.35
SQSTM1-212ENST00000508284 ZBTB3Q9H5J0 574 aa23.49■■□□□ 1.35
SQSTM1-212ENST00000508284 LAS1LQ9Y4W2 734 aaKnown RBP23.49■■□□□ 1.35
SQSTM1-212ENST00000508284 NFKBIEO00221 500 aa23.48■■□□□ 1.35
SQSTM1-212ENST00000508284 TOMM70O94826 608 aa23.48■■□□□ 1.35
SQSTM1-212ENST00000508284 SBF1O95248 1867 aa23.47■■□□□ 1.35
SQSTM1-212ENST00000508284 HSPA6P17066 643 aa23.47■■□□□ 1.35
SQSTM1-212ENST00000508284 PRPF40BQ6NWY9 871 aaKnown RBP23.47■■□□□ 1.35
SQSTM1-212ENST00000508284 NYXQ9GZU5 481 aa23.47■■□□□ 1.35
SQSTM1-212ENST00000508284 ZC3H4Q9UPT8 1303 aaKnown RBP23.47■■□□□ 1.35
SQSTM1-212ENST00000508284 COL11A2P13942 1736 aaPredicted RBP23.47■■□□□ 1.35
SQSTM1-212ENST00000508284 NPR1P16066 1061 aa23.46■■□□□ 1.35
SQSTM1-212ENST00000508284 GPTP24298 496 aa23.45■■□□□ 1.34
SQSTM1-212ENST00000508284 PRELPP51888 382 aa23.45■■□□□ 1.34
SQSTM1-212ENST00000508284 SOGA3Q5TF21 947 aa23.45■■□□□ 1.34
SQSTM1-212ENST00000508284 RRAGCQ9HB90 399 aa23.45■■□□□ 1.34
SQSTM1-212ENST00000508284 TRIM35Q9UPQ4 493 aa23.45■■□□□ 1.34
SQSTM1-212ENST00000508284 NECTIN2Q92692 538 aa23.44■■□□□ 1.34
SQSTM1-212ENST00000508284 TAOK3Q9H2K8 898 aa23.44■■□□□ 1.34
SQSTM1-212ENST00000508284 KLRG2A4D1S0 409 aaPredicted RBP23.43■■□□□ 1.34
SQSTM1-212ENST00000508284 CHL1O00533 1208 aa23.43■■□□□ 1.34
SQSTM1-212ENST00000508284 GIGYF2Q6Y7W6 1299 aaKnown RBP23.43■■□□□ 1.34
SQSTM1-212ENST00000508284 NUTM1Q86Y26 1132 aa23.43■■□□□ 1.34
SQSTM1-212ENST00000508284 PDIA6Q15084 440 aa23.42■■□□□ 1.34
SQSTM1-212ENST00000508284 GLTPD2A6NH11 291 aa23.41■■□□□ 1.34
SQSTM1-212ENST00000508284 ANXA1P04083 346 aa23.41■■□□□ 1.34
SQSTM1-212ENST00000508284 ERFEQ4G0M1 354 aa23.41■■□□□ 1.34
SQSTM1-212ENST00000508284 SLX4Q8IY92 1834 aa23.4■■□□□ 1.34
SQSTM1-212ENST00000508284 ALDH1B1P30837 517 aa23.4■■□□□ 1.34
SQSTM1-212ENST00000508284 PROSER3Q2NL68 480 aa23.4■■□□□ 1.34
SQSTM1-212ENST00000508284 CCDC93Q567U6 631 aa23.4■■□□□ 1.34
SQSTM1-212ENST00000508284 DPY19L2Q6NUT2 758 aa23.4■■□□□ 1.34
SQSTM1-212ENST00000508284 RBM46Q8TBY0 533 aaKnown RBP23.4■■□□□ 1.34
SQSTM1-212ENST00000508284 NUP98P52948 1817 aa23.4■■□□□ 1.34
SQSTM1-212ENST00000508284 UBN2Q6ZU65 1347 aa23.39■■□□□ 1.34
SQSTM1-212ENST00000508284 LTBP3Q9NS15 1303 aa23.39■■□□□ 1.34
SQSTM1-212ENST00000508284 CEP350Q5VT06 3117 aa23.39■■□□□ 1.34
SQSTM1-212ENST00000508284 AIMP1Q12904 312 aaKnown RBP23.39■■□□□ 1.33
SQSTM1-212ENST00000508284 KRT24Q2M2I5 525 aa23.39■■□□□ 1.33
SQSTM1-212ENST00000508284 SUSD4Q5VX71 490 aa23.39■■□□□ 1.33
SQSTM1-212ENST00000508284 PPP1R42Q7Z4L9 355 aa23.39■■□□□ 1.33
SQSTM1-212ENST00000508284 ZNF34Q8IZ26 560 aa23.39■■□□□ 1.33
SQSTM1-212ENST00000508284 FAM9BQ8IZU0 186 aa23.39■■□□□ 1.33
SQSTM1-212ENST00000508284 CACNA1SQ13698 1873 aa23.39■■□□□ 1.33
SQSTM1-212ENST00000508284 APAF1O14727 1248 aa23.38■■□□□ 1.33
SQSTM1-212ENST00000508284 PARP10Q53GL7 1025 aa23.38■■□□□ 1.33
SQSTM1-212ENST00000508284 LRP10Q7Z4F1 713 aa23.38■■□□□ 1.33
SQSTM1-212ENST00000508284 ABCC12Q96J65 1359 aa23.38■■□□□ 1.33
SQSTM1-212ENST00000508284 CCDC88AQ3V6T2 1871 aa23.37■■□□□ 1.33
SQSTM1-212ENST00000508284 COPS6Q7L5N1 327 aa23.37■■□□□ 1.33
SQSTM1-212ENST00000508284 C7orf43Q8WVR3 580 aa23.37■■□□□ 1.33
SQSTM1-212ENST00000508284 RPGRQ92834 1020 aaKnown RBP23.37■■□□□ 1.33
SQSTM1-212ENST00000508284 CFAP44Q96MT7 982 aa23.37■■□□□ 1.33
SQSTM1-212ENST00000508284 VEGFAP15692 232 aaPredicted RBP23.36■■□□□ 1.33
SQSTM1-212ENST00000508284 HDGFL1Q5TGJ6 251 aa23.36■■□□□ 1.33
SQSTM1-212ENST00000508284 XAGE3Q8WTP9 111 aa23.36■■□□□ 1.33
SQSTM1-212ENST00000508284 DDX21Q9NR30 783 aaKnown RBP eCLIP23.36■■□□□ 1.33
SQSTM1-212ENST00000508284 FER1L6Q2WGJ9 1857 aa23.36■■□□□ 1.33
SQSTM1-212ENST00000508284 IBTKQ9P2D0 1353 aaPredicted RBP23.36■■□□□ 1.33
SQSTM1-212ENST00000508284 APLP1P51693 650 aa23.35■■□□□ 1.33
SQSTM1-212ENST00000508284 CRY2Q49AN0 593 aa23.35■■□□□ 1.33
Retrieved 100 of 20,778 RNA–protein pairs in 44.8 ms