RNA–Protein interactions for RNA: ENST00000507778.1

HMGB1P28-201, Transcript of high mobility group box 1 pseudogene 28, humanhuman

BASIC

Gene HMGB1P28, Length 552 nt, Biotype processed pseudogene.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1P28-201ENST00000507778 HIF1AQ16665 826 aa7.01□□□□□ -1.29
HMGB1P28-201ENST00000507778 ATP13A2Q9NQ11 1180 aa7.01□□□□□ -1.29
HMGB1P28-201ENST00000507778 GPC6Q9Y625 555 aaPredicted RBP7.01□□□□□ -1.29
HMGB1P28-201ENST00000507778 ST8SIA5O15466 376 aa7□□□□□ -1.29
HMGB1P28-201ENST00000507778 MSX1P28360 303 aa7□□□□□ -1.29
HMGB1P28-201ENST00000507778 ZNF800Q2TB10 664 aaPredicted RBP eCLIP7□□□□□ -1.29
HMGB1P28-201ENST00000507778 DNAJC14Q6Y2X3 702 aaPredicted RBP7□□□□□ -1.29
HMGB1P28-201ENST00000507778 BICDL1Q6ZP65 573 aa7□□□□□ -1.29
HMGB1P28-201ENST00000507778 ETFBKMTQ8IXQ9 262 aa7□□□□□ -1.29
HMGB1P28-201ENST00000507778 C7orf43Q8WVR3 580 aa7□□□□□ -1.29
HMGB1P28-201ENST00000507778 FOXD4L4Q8WXT5 416 aaPredicted RBP7□□□□□ -1.29
HMGB1P28-201ENST00000507778 NEUROD4Q9HD90 331 aa7□□□□□ -1.29
HMGB1P28-201ENST00000507778 ANKIB1Q9P2G1 1089 aa7□□□□□ -1.29
HMGB1P28-201ENST00000507778 BRPF3Q9ULD4 1205 aa7□□□□□ -1.29
HMGB1P28-201ENST00000507778 ZBTB39O15060 712 aa6.99□□□□□ -1.29
HMGB1P28-201ENST00000507778 NDUFB5O43674 189 aa6.99□□□□□ -1.29
HMGB1P28-201ENST00000507778 MAN1A2O60476 641 aa6.99□□□□□ -1.29
HMGB1P28-201ENST00000507778 ARSJQ5FYB0 599 aaPredicted RBP6.99□□□□□ -1.29
HMGB1P28-201ENST00000507778 FAM26DQ5JW98 314 aa6.99□□□□□ -1.29
HMGB1P28-201ENST00000507778 ZSCAN29Q8IWY8 852 aaPredicted RBP6.99□□□□□ -1.29
HMGB1P28-201ENST00000507778 SUSD3Q96L08 255 aa6.99□□□□□ -1.29
HMGB1P28-201ENST00000507778 DNMT3LQ9UJW3 386 aa6.99□□□□□ -1.29
HMGB1P28-201ENST00000507778 ANKRD33BA6NCL7 494 aa6.98□□□□□ -1.29
HMGB1P28-201ENST00000507778 ATP4AP20648 1035 aa6.98□□□□□ -1.29
HMGB1P28-201ENST00000507778 TREML1Q86YW5 311 aa6.98□□□□□ -1.29
HMGB1P28-201ENST00000507778 ZIC5Q96T25 663 aa6.98□□□□□ -1.29
HMGB1P28-201ENST00000507778 BCS1LQ9Y276 419 aa6.98□□□□□ -1.29
HMGB1P28-201ENST00000507778 DYRK1BQ9Y463 629 aa6.98□□□□□ -1.29
HMGB1P28-201ENST00000507778 LCE2BO14633 110 aa6.97□□□□□ -1.29
HMGB1P28-201ENST00000507778 FZD6O60353 706 aa6.97□□□□□ -1.29
HMGB1P28-201ENST00000507778 MICAL2O94851 1124 aa6.97□□□□□ -1.29
HMGB1P28-201ENST00000507778 F11P03951 625 aa6.97□□□□□ -1.29
HMGB1P28-201ENST00000507778 ZAP70P43403 619 aa6.97□□□□□ -1.29
HMGB1P28-201ENST00000507778 NPM2Q86SE8 214 aaKnown RBP6.97□□□□□ -1.29
HMGB1P28-201ENST00000507778 ATCAYQ86WG3 371 aa6.97□□□□□ -1.29
HMGB1P28-201ENST00000507778 ASB16Q96NS5 453 aa6.97□□□□□ -1.29
HMGB1P28-201ENST00000507778 CITED4Q96RK1 184 aa6.97□□□□□ -1.29
HMGB1P28-201ENST00000507778 RBCK1Q9BYM8 510 aa6.97□□□□□ -1.29
HMGB1P28-201ENST00000507778 CCDC87Q9NVE4 849 aa6.97□□□□□ -1.29
HMGB1P28-201ENST00000507778 DACH1Q9UI36 760 aa6.97□□□□□ -1.29
HMGB1P28-201ENST00000507778 AMOTL2Q9Y2J4 779 aa6.97□□□□□ -1.29
HMGB1P28-201ENST00000507778 TGFBR3LH3BV60 316 aa6.96□□□□□ -1.3
HMGB1P28-201ENST00000507778 IER5Q5VY09 327 aa6.96□□□□□ -1.3
HMGB1P28-201ENST00000507778 LRRC69Q6ZNQ3 347 aa6.96□□□□□ -1.3
HMGB1P28-201ENST00000507778 ZNF280CQ8ND82 737 aa6.96□□□□□ -1.3
HMGB1P28-201ENST00000507778 TMC1Q8TDI8 760 aa6.96□□□□□ -1.3
HMGB1P28-201ENST00000507778 SENP2Q9HC62 589 aa6.96□□□□□ -1.3
HMGB1P28-201ENST00000507778 GPAMQ9HCL2 828 aa6.96□□□□□ -1.3
HMGB1P28-201ENST00000507778 FAM13BQ9NYF5 915 aa6.96□□□□□ -1.3
HMGB1P28-201ENST00000507778 GJA3Q9Y6H8 435 aa6.96□□□□□ -1.3
HMGB1P28-201ENST00000507778 A0A1W2PNR3 127 aa6.95□□□□□ -1.3
HMGB1P28-201ENST00000507778 MZF1P28698 734 aaPredicted RBP6.95□□□□□ -1.3
HMGB1P28-201ENST00000507778 DNM1Q05193 864 aaKnown RBP6.95□□□□□ -1.3
HMGB1P28-201ENST00000507778 RGL4Q8IZJ4 473 aa6.95□□□□□ -1.3
HMGB1P28-201ENST00000507778 PGBD3Q8N328 593 aa6.95□□□□□ -1.3
HMGB1P28-201ENST00000507778 KIFC2Q96AC6 838 aa6.95□□□□□ -1.3
HMGB1P28-201ENST00000507778 KLRG1Q96E93 195 aa6.95□□□□□ -1.3
HMGB1P28-201ENST00000507778 HSH2DQ96JZ2 352 aa6.95□□□□□ -1.3
HMGB1P28-201ENST00000507778 GAS2L1Q99501 681 aaPredicted RBP6.95□□□□□ -1.3
HMGB1P28-201ENST00000507778 CRISPLD1Q9H336 500 aa6.95□□□□□ -1.3
HMGB1P28-201ENST00000507778 SOBPA7XYQ1 873 aa6.94□□□□□ -1.3
HMGB1P28-201ENST00000507778 PCSK2P16519 638 aa6.94□□□□□ -1.3
HMGB1P28-201ENST00000507778 USP5P45974 858 aa6.94□□□□□ -1.3
HMGB1P28-201ENST00000507778 PDE3BQ13370 1112 aa6.94□□□□□ -1.3
HMGB1P28-201ENST00000507778 TMC7Q7Z402 723 aa6.94□□□□□ -1.3
HMGB1P28-201ENST00000507778 GPR152Q8TDT2 470 aa6.94□□□□□ -1.3
HMGB1P28-201ENST00000507778 PIK3R5Q8WYR1 880 aa6.94□□□□□ -1.3
HMGB1P28-201ENST00000507778 EDEM1Q92611 657 aa6.94□□□□□ -1.3
HMGB1P28-201ENST00000507778 RUBCNLQ9H714 662 aa6.94□□□□□ -1.3
HMGB1P28-201ENST00000507778 DMGDHQ9UI17 866 aaKnown RBP6.94□□□□□ -1.3
HMGB1P28-201ENST00000507778 POLIQ9UNA4 740 aa6.94□□□□□ -1.3
HMGB1P28-201ENST00000507778 SENP3-EIF4A1A0A087X0R7 540 aa6.93□□□□□ -1.3
HMGB1P28-201ENST00000507778 OPLAHO14841 1288 aa6.93□□□□□ -1.3
HMGB1P28-201ENST00000507778 PDGFAP04085 211 aa6.93□□□□□ -1.3
HMGB1P28-201ENST00000507778 IDH3AP50213 366 aa6.93□□□□□ -1.3
HMGB1P28-201ENST00000507778 PTSQ03393 145 aa6.93□□□□□ -1.3
HMGB1P28-201ENST00000507778 EFHC2Q5JST6 749 aa6.93□□□□□ -1.3
HMGB1P28-201ENST00000507778 BTLAQ7Z6A9 289 aa6.93□□□□□ -1.3
HMGB1P28-201ENST00000507778 NLRP8Q86W28 1048 aa6.93□□□□□ -1.3
HMGB1P28-201ENST00000507778 NPAS4Q8IUM7 802 aa6.93□□□□□ -1.3
HMGB1P28-201ENST00000507778 TTC16Q8NEE8 873 aa6.93□□□□□ -1.3
HMGB1P28-201ENST00000507778 RPLP1P05386 114 aaKnown RBP6.92□□□□□ -1.3
HMGB1P28-201ENST00000507778 INPP5BP32019 993 aa6.92□□□□□ -1.3
HMGB1P28-201ENST00000507778 RIPOR1Q6ZS17 1223 aa6.92□□□□□ -1.3
HMGB1P28-201ENST00000507778 DMRTB1Q96MA1 342 aa6.92□□□□□ -1.3
HMGB1P28-201ENST00000507778 GMPR2Q9P2T1 348 aaKnown RBP6.92□□□□□ -1.3
HMGB1P28-201ENST00000507778 SLC35F4A4IF30 521 aa6.91□□□□□ -1.3
HMGB1P28-201ENST00000507778 RBM25P49756 843 aaKnown RBP6.91□□□□□ -1.3
HMGB1P28-201ENST00000507778 ARSDP51689 593 aa6.91□□□□□ -1.3
HMGB1P28-201ENST00000507778 PLCB3Q01970 1234 aa6.91□□□□□ -1.3
HMGB1P28-201ENST00000507778 LBRQ14739 615 aaKnown RBP6.91□□□□□ -1.3
HMGB1P28-201ENST00000507778 COL19A1Q14993 1142 aa6.91□□□□□ -1.3
HMGB1P28-201ENST00000507778 GJD3Q8N144 294 aa6.91□□□□□ -1.3
HMGB1P28-201ENST00000507778 NUDT16Q96DE0 195 aaKnown RBP6.91□□□□□ -1.3
HMGB1P28-201ENST00000507778 TRIM47Q96LD4 638 aa6.91□□□□□ -1.3
HMGB1P28-201ENST00000507778 CEP63Q96MT8 703 aa6.91□□□□□ -1.3
HMGB1P28-201ENST00000507778 FAM129BQ96TA1 746 aa6.91□□□□□ -1.3
HMGB1P28-201ENST00000507778 BCL2L13Q9BXK5 485 aa6.91□□□□□ -1.3
HMGB1P28-201ENST00000507778 RBM47A0AV96 593 aaKnown RBP6.9□□□□□ -1.3
HMGB1P28-201ENST00000507778 H7C1W4 665 aa6.9□□□□□ -1.3
Retrieved 100 of 20,778 RNA–protein pairs in 22.1 ms