RNA–Protein interactions for RNA: ENST00000497977.1

PTPRN-218, Transcript of protein tyrosine phosphatase, receptor type N, humanhuman

TSL 3

Gene PTPRN, Length 701 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRN-218ENST00000497977 CARMIL3Q8ND23 1372 aa13.4□□□□□ -0.26
PTPRN-218ENST00000497977 ADAMTS7Q9UKP4 1686 aa13.4□□□□□ -0.26
PTPRN-218ENST00000497977 MAP3K15Q6ZN16 1313 aa13.39□□□□□ -0.27
PTPRN-218ENST00000497977 HSP90B1P14625 803 aaKnown RBP13.39□□□□□ -0.27
PTPRN-218ENST00000497977 DDR1Q08345 913 aa13.39□□□□□ -0.27
PTPRN-218ENST00000497977 PARP10Q53GL7 1025 aa13.39□□□□□ -0.27
PTPRN-218ENST00000497977 BCL2L12Q9HB09 334 aa13.39□□□□□ -0.27
PTPRN-218ENST00000497977 BCS1LQ9Y276 419 aa13.39□□□□□ -0.27
PTPRN-218ENST00000497977 DPEP1P16444 411 aa13.38□□□□□ -0.27
PTPRN-218ENST00000497977 PIP4K2AP48426 406 aaPredicted RBP13.38□□□□□ -0.27
PTPRN-218ENST00000497977 GIGYF2Q6Y7W6 1299 aaKnown RBP13.38□□□□□ -0.27
PTPRN-218ENST00000497977 ANKRD13DQ6ZTN6 518 aa13.38□□□□□ -0.27
PTPRN-218ENST00000497977 COPS6Q7L5N1 327 aa13.38□□□□□ -0.27
PTPRN-218ENST00000497977 TMX4Q9H1E5 349 aaPredicted RBP13.38□□□□□ -0.27
PTPRN-218ENST00000497977 SALL2Q9Y467 1007 aaPredicted RBP13.38□□□□□ -0.27
PTPRN-218ENST00000497977 AIMP1Q12904 312 aaKnown RBP13.37□□□□□ -0.27
PTPRN-218ENST00000497977 C2CD5Q86YS7 1000 aa13.37□□□□□ -0.27
PTPRN-218ENST00000497977 TTLL6Q8N841 843 aa13.37□□□□□ -0.27
PTPRN-218ENST00000497977 NECTIN2Q92692 538 aa13.37□□□□□ -0.27
PTPRN-218ENST00000497977 CNKSR1Q969H4 720 aa13.37□□□□□ -0.27
PTPRN-218ENST00000497977 SIPA1L3O60292 1781 aaPredicted RBP13.37□□□□□ -0.27
PTPRN-218ENST00000497977 ELL2O00472 640 aaPredicted RBP13.36□□□□□ -0.27
PTPRN-218ENST00000497977 ALDH1B1P30837 517 aa13.36□□□□□ -0.27
PTPRN-218ENST00000497977 SOGA3Q5TF21 947 aa13.36□□□□□ -0.27
PTPRN-218ENST00000497977 ARHGAP27Q6ZUM4 889 aa13.36□□□□□ -0.27
PTPRN-218ENST00000497977 ZBTB3Q9H5J0 574 aa13.36□□□□□ -0.27
PTPRN-218ENST00000497977 QSER1Q2KHR3 1735 aa13.36□□□□□ -0.27
PTPRN-218ENST00000497977 PDIA6Q15084 440 aa13.35□□□□□ -0.27
PTPRN-218ENST00000497977 RIC3Q7Z5B4 369 aa13.35□□□□□ -0.27
PTPRN-218ENST00000497977 PLBD2Q8NHP8 589 aa13.35□□□□□ -0.27
PTPRN-218ENST00000497977 XAGE3Q8WTP9 111 aa13.35□□□□□ -0.27
PTPRN-218ENST00000497977 ZNF622Q969S3 477 aaKnown RBP eCLIP13.35□□□□□ -0.27
PTPRN-218ENST00000497977 TCIRG1Q13488 830 aa13.34□□□□□ -0.27
PTPRN-218ENST00000497977 HLFQ16534 295 aa13.34□□□□□ -0.27
PTPRN-218ENST00000497977 TWISTNBQ3B726 338 aaPredicted RBP13.34□□□□□ -0.27
PTPRN-218ENST00000497977 PRR5LQ6MZQ0 368 aa13.34□□□□□ -0.27
PTPRN-218ENST00000497977 TTLL7Q6ZT98 887 aa13.34□□□□□ -0.27
PTPRN-218ENST00000497977 MASTLQ96GX5 879 aa13.34□□□□□ -0.27
PTPRN-218ENST00000497977 NLRP3Q96P20 1036 aa13.34□□□□□ -0.27
PTPRN-218ENST00000497977 UTP14AQ9BVJ6 771 aaKnown RBP13.34□□□□□ -0.27
PTPRN-218ENST00000497977 CHPF2Q9P2E5 772 aa13.34□□□□□ -0.27
PTPRN-218ENST00000497977 RNF123Q5XPI4 1314 aa13.34□□□□□ -0.27
PTPRN-218ENST00000497977 GRIPAP1Q4V328 841 aa13.33□□□□□ -0.28
PTPRN-218ENST00000497977 STYK1Q6J9G0 422 aa13.33□□□□□ -0.28
PTPRN-218ENST00000497977 ZNF34Q8IZ26 560 aa13.33□□□□□ -0.28
PTPRN-218ENST00000497977 C8orf58Q8NAV2 365 aa13.33□□□□□ -0.28
PTPRN-218ENST00000497977 KDM3BQ7LBC6 1761 aa13.32□□□□□ -0.28
PTPRN-218ENST00000497977 FAM177BA6PVY3 158 aa13.32□□□□□ -0.28
PTPRN-218ENST00000497977 NPR1P16066 1061 aa13.32□□□□□ -0.28
PTPRN-218ENST00000497977 YBX3P16989 372 aaKnown RBP eCLIP13.32□□□□□ -0.28
PTPRN-218ENST00000497977 KCNA3P22001 575 aa13.32□□□□□ -0.28
PTPRN-218ENST00000497977 NEXNQ0ZGT2 675 aa13.32□□□□□ -0.28
PTPRN-218ENST00000497977 CICQ96RK0 1608 aaPredicted RBP13.31□□□□□ -0.28
PTPRN-218ENST00000497977 C10orf71Q711Q0 1435 aa13.31□□□□□ -0.28
PTPRN-218ENST00000497977 E9PSI1 815 aa13.31□□□□□ -0.28
PTPRN-218ENST00000497977 SLC4A2P04920 1241 aa13.31□□□□□ -0.28
PTPRN-218ENST00000497977 CHRNA5P30532 468 aa13.31□□□□□ -0.28
PTPRN-218ENST00000497977 KRT24Q2M2I5 525 aa13.31□□□□□ -0.28
PTPRN-218ENST00000497977 RPGRQ92834 1020 aaKnown RBP13.31□□□□□ -0.28
PTPRN-218ENST00000497977 TSR2Q969E8 191 aaKnown RBP13.31□□□□□ -0.28
PTPRN-218ENST00000497977 YTHDC1Q96MU7 727 aaKnown RBP13.31□□□□□ -0.28
PTPRN-218ENST00000497977 TRMT112Q9UI30 125 aaKnown RBP13.31□□□□□ -0.28
PTPRN-218ENST00000497977 TAF1LQ8IZX4 1826 aa13.3□□□□□ -0.28
PTPRN-218ENST00000497977 KLRG2A4D1S0 409 aaPredicted RBP13.3□□□□□ -0.28
PTPRN-218ENST00000497977 SRGNP10124 158 aa13.3□□□□□ -0.28
PTPRN-218ENST00000497977 GPTP24298 496 aa13.3□□□□□ -0.28
PTPRN-218ENST00000497977 TRIM28Q13263 835 aaKnown RBP13.3□□□□□ -0.28
PTPRN-218ENST00000497977 CC2D2BQ6DHV5 1058 aa13.3□□□□□ -0.28
PTPRN-218ENST00000497977 ZNF428Q96B54 188 aa13.3□□□□□ -0.28
PTPRN-218ENST00000497977 RBM17Q96I25 401 aaKnown RBP13.3□□□□□ -0.28
PTPRN-218ENST00000497977 ANXA1P04083 346 aa13.29□□□□□ -0.28
PTPRN-218ENST00000497977 HNRNPUQ00839 825 aaKnown RBP eCLIP13.29□□□□□ -0.28
PTPRN-218ENST00000497977 SLC10A5Q5PT55 438 aa13.29□□□□□ -0.28
PTPRN-218ENST00000497977 SUSD4Q5VX71 490 aa13.29□□□□□ -0.28
PTPRN-218ENST00000497977 LRP10Q7Z4F1 713 aa13.29□□□□□ -0.28
PTPRN-218ENST00000497977 UBR2Q8IWV8 1755 aa13.29□□□□□ -0.28
PTPRN-218ENST00000497977 UBR3Q6ZT12 1888 aa13.29□□□□□ -0.28
PTPRN-218ENST00000497977 PROSER3Q2NL68 480 aa13.28□□□□□ -0.28
PTPRN-218ENST00000497977 KSR2Q6VAB6 950 aa13.28□□□□□ -0.28
PTPRN-218ENST00000497977 RTKN2Q8IZC4 609 aa13.28□□□□□ -0.28
PTPRN-218ENST00000497977 WWC3Q9ULE0 1092 aa13.28□□□□□ -0.28
PTPRN-218ENST00000497977 SH3TC1Q8TE82 1336 aa13.28□□□□□ -0.28
PTPRN-218ENST00000497977 ATP10DQ9P241 1426 aa13.28□□□□□ -0.28
PTPRN-218ENST00000497977 TJP1Q07157 1748 aa13.27□□□□□ -0.28
PTPRN-218ENST00000497977 VAMP4O75379 141 aa13.27□□□□□ -0.29
PTPRN-218ENST00000497977 EXOSC9Q06265 439 aaKnown RBP13.27□□□□□ -0.29
PTPRN-218ENST00000497977 ERFEQ4G0M1 354 aa13.27□□□□□ -0.29
PTPRN-218ENST00000497977 NLRP10Q86W26 655 aa13.27□□□□□ -0.29
PTPRN-218ENST00000497977 CCDC191Q8NCU4 936 aa13.27□□□□□ -0.29
PTPRN-218ENST00000497977 FANCIQ9NVI1 1328 aa13.27□□□□□ -0.29
PTPRN-218ENST00000497977 IBTKQ9P2D0 1353 aaPredicted RBP13.27□□□□□ -0.29
PTPRN-218ENST00000497977 PXDNLA1KZ92 1463 aa13.27□□□□□ -0.29
PTPRN-218ENST00000497977 COL5A3P25940 1745 aaPredicted RBP13.27□□□□□ -0.29
PTPRN-218ENST00000497977 LAMB4A4D0S4 1761 aa13.26□□□□□ -0.29
PTPRN-218ENST00000497977 BBOX1O75936 387 aa13.26□□□□□ -0.29
PTPRN-218ENST00000497977 DDX46Q7L014 1031 aaKnown RBP13.26□□□□□ -0.29
PTPRN-218ENST00000497977 CCDC24Q8N4L8 307 aa13.26□□□□□ -0.29
PTPRN-218ENST00000497977 TSPYL6Q8N831 410 aa13.26□□□□□ -0.29
PTPRN-218ENST00000497977 C21orf2O43822 256 aa13.25□□□□□ -0.29
PTPRN-218ENST00000497977 CT47B1P0C2W7 299 aaPredicted RBP13.25□□□□□ -0.29
Retrieved 100 of 20,778 RNA–protein pairs in 16.8 ms