RNA–Protein interactions for RNA: ENST00000497815.5

CUX1-210, Transcript of cut like homeobox 1, humanhuman

TSL 2

Gene CUX1, Length 947 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-210ENST00000497815 USP42Q9H9J4 1324 aaKnown RBP15.23■□□□□ 0.03
CUX1-210ENST00000497815 ZBTB7AO95365 584 aa15.23■□□□□ 0.03
CUX1-210ENST00000497815 ALDH1L2Q3SY69 923 aa15.23■□□□□ 0.03
CUX1-210ENST00000497815 MSL1Q68DK7 614 aa15.23■□□□□ 0.03
CUX1-210ENST00000497815 MRPL50Q8N5N7 158 aaKnown RBP15.23■□□□□ 0.03
CUX1-210ENST00000497815 QSER1Q2KHR3 1735 aa15.23■□□□□ 0.03
CUX1-210ENST00000497815 FLIIQ13045 1269 aa15.22■□□□□ 0.03
CUX1-210ENST00000497815 MAP3K15Q6ZN16 1313 aa15.21■□□□□ 0.03
CUX1-210ENST00000497815 BCAR3O75815 825 aa15.21■□□□□ 0.03
CUX1-210ENST00000497815 CAMTA2O94983 1202 aa15.21■□□□□ 0.03
CUX1-210ENST00000497815 GYS1P13807 737 aa15.21■□□□□ 0.03
CUX1-210ENST00000497815 FKBP5Q13451 457 aaPredicted RBP15.21■□□□□ 0.03
CUX1-210ENST00000497815 HLFQ16534 295 aa15.21■□□□□ 0.03
CUX1-210ENST00000497815 BCL2L12Q9HB09 334 aa15.21■□□□□ 0.03
CUX1-210ENST00000497815 DDX58O95786 925 aaKnown RBP15.2■□□□□ 0.02
CUX1-210ENST00000497815 FKBP8Q14318 412 aa15.2■□□□□ 0.02
CUX1-210ENST00000497815 ANKRD13DQ6ZTN6 518 aa15.2■□□□□ 0.02
CUX1-210ENST00000497815 RIC3Q7Z5B4 369 aa15.2■□□□□ 0.02
CUX1-210ENST00000497815 ATF5Q9Y2D1 282 aaPredicted RBP15.2■□□□□ 0.02
CUX1-210ENST00000497815 CASZ1Q86V15 1759 aa15.2■□□□□ 0.02
CUX1-210ENST00000497815 BICDL1Q6ZP65 573 aa15.19■□□□□ 0.02
CUX1-210ENST00000497815 PLBD2Q8NHP8 589 aa15.19■□□□□ 0.02
CUX1-210ENST00000497815 RCAN3Q9UKA8 241 aa15.19■□□□□ 0.02
CUX1-210ENST00000497815 NOB1Q9ULX3 412 aaKnown RBP15.19■□□□□ 0.02
CUX1-210ENST00000497815 ZNF652Q9Y2D9 606 aa15.19■□□□□ 0.02
CUX1-210ENST00000497815 SCN7AQ01118 1682 aa15.19■□□□□ 0.02
CUX1-210ENST00000497815 PI4KAP2A4QPH2 592 aa15.18■□□□□ 0.02
CUX1-210ENST00000497815 ERVV-1B6SEH8 477 aa15.18■□□□□ 0.02
CUX1-210ENST00000497815 PI4KAP1Q8N8J0 262 aa15.18■□□□□ 0.02
CUX1-210ENST00000497815 SLC16A10Q8TF71 515 aa15.18■□□□□ 0.02
CUX1-210ENST00000497815 FRAT1Q92837 279 aaPredicted RBP15.18■□□□□ 0.02
CUX1-210ENST00000497815 MAP3K2Q9Y2U5 619 aa15.18■□□□□ 0.02
CUX1-210ENST00000497815 BCORQ6W2J9 1755 aa15.17■□□□□ 0.02
CUX1-210ENST00000497815 ADCY9O60503 1353 aa15.17■□□□□ 0.02
CUX1-210ENST00000497815 GPTP24298 496 aa15.17■□□□□ 0.02
CUX1-210ENST00000497815 HOXD11P31277 338 aaPredicted RBP15.17■□□□□ 0.02
CUX1-210ENST00000497815 TBC1D9BQ66K14 1250 aa15.17■□□□□ 0.02
CUX1-210ENST00000497815 KSR2Q6VAB6 950 aa15.17■□□□□ 0.02
CUX1-210ENST00000497815 NLGN1Q8N2Q7 840 aa15.17■□□□□ 0.02
CUX1-210ENST00000497815 MTFR1LQ9H019 292 aa15.17■□□□□ 0.02
CUX1-210ENST00000497815 F6X3S4 739 aa15.16■□□□□ 0.02
CUX1-210ENST00000497815 GIGYF2Q6Y7W6 1299 aaKnown RBP15.16■□□□□ 0.02
CUX1-210ENST00000497815 MYD88Q99836 296 aa15.16■□□□□ 0.02
CUX1-210ENST00000497815 KIF16BQ96L93 1317 aa15.16■□□□□ 0.02
CUX1-210ENST00000497815 FAM177BA6PVY3 158 aa15.15■□□□□ 0.02
CUX1-210ENST00000497815 ATP5J2-PTCD1G3V325 749 aa15.15■□□□□ 0.02
CUX1-210ENST00000497815 NFIXQ14938 502 aa15.15■□□□□ 0.02
CUX1-210ENST00000497815 SLC4A10Q6U841 1118 aa15.15■□□□□ 0.02
CUX1-210ENST00000497815 CLEC4GQ6UXB4 293 aa15.15■□□□□ 0.02
CUX1-210ENST00000497815 NIP7Q9Y221 180 aaKnown RBP eCLIP15.15■□□□□ 0.022e-10■■■■■ 60.1
CUX1-210ENST00000497815 PTPRCP08575 1304 aa15.15■□□□□ 0.02
CUX1-210ENST00000497815 ARFGEF2Q9Y6D5 1785 aa15.14■□□□□ 0.01
CUX1-210ENST00000497815 MMP10P09238 476 aa15.14■□□□□ 0.01
CUX1-210ENST00000497815 TCIRG1Q13488 830 aa15.14■□□□□ 0.01
CUX1-210ENST00000497815 CNKSR2Q8WXI2 1034 aa15.14■□□□□ 0.01
CUX1-210ENST00000497815 DNAAF4Q8WXU2 420 aa15.14■□□□□ 0.01
CUX1-210ENST00000497815 SETDB2Q96T68 719 aa15.14■□□□□ 0.01
CUX1-210ENST00000497815 METTL22Q9BUU2 404 aaPredicted RBP15.14■□□□□ 0.01
CUX1-210ENST00000497815 POLD1P28340 1107 aa15.13■□□□□ 0.01
CUX1-210ENST00000497815 TM4SF1P30408 202 aa15.13■□□□□ 0.01
CUX1-210ENST00000497815 BRPF1P55201 1214 aaPredicted RBP15.13■□□□□ 0.01
CUX1-210ENST00000497815 DDR1Q08345 913 aa15.13■□□□□ 0.01
CUX1-210ENST00000497815 HSP90AB3PQ58FF7 597 aa15.13■□□□□ 0.01
CUX1-210ENST00000497815 SPON1Q9HCB6 807 aa15.13■□□□□ 0.01
CUX1-210ENST00000497815 TNNQ9UQP3 1299 aa15.13■□□□□ 0.01
CUX1-210ENST00000497815 ATP10DQ9P241 1426 aa15.12■□□□□ 0.01
CUX1-210ENST00000497815 RGL2O15211 777 aa15.12■□□□□ 0.01
CUX1-210ENST00000497815 IPO8O15397 1037 aaKnown RBP15.12■□□□□ 0.01
CUX1-210ENST00000497815 NEXNQ0ZGT2 675 aa15.12■□□□□ 0.01
CUX1-210ENST00000497815 ZKSCAN2Q63HK3 967 aa15.12■□□□□ 0.01
CUX1-210ENST00000497815 ZNF34Q8IZ26 560 aa15.12■□□□□ 0.01
CUX1-210ENST00000497815 API5Q9BZZ5 524 aaKnown RBP15.12■□□□□ 0.01
CUX1-210ENST00000497815 PARP3Q9Y6F1 533 aa15.12■□□□□ 0.01
CUX1-210ENST00000497815 UBN2Q6ZU65 1347 aa15.12■□□□□ 0.01
CUX1-210ENST00000497815 CARMIL3Q8ND23 1372 aa15.11■□□□□ 0.01
CUX1-210ENST00000497815 POLRMTO00411 1230 aaKnown RBP15.11■□□□□ 0.01
CUX1-210ENST00000497815 NPHP1O15259 732 aa15.11■□□□□ 0.01
CUX1-210ENST00000497815 PLIN1O60240 522 aa15.11■□□□□ 0.01
CUX1-210ENST00000497815 CWF19L2Q2TBE0 894 aaKnown RBP15.11■□□□□ 0.01
CUX1-210ENST00000497815 CLUAP1Q96AJ1 413 aa15.11■□□□□ 0.01
CUX1-210ENST00000497815 CACNA1FO60840 1977 aa15.11■□□□□ 0.01
CUX1-210ENST00000497815 NUP98P52948 1817 aa15.1■□□□□ 0.01
CUX1-210ENST00000497815 SERPINB2P05120 415 aa15.1■□□□□ 0.01
CUX1-210ENST00000497815 IGKV5-2P06315 115 aa15.1■□□□□ 0.01
CUX1-210ENST00000497815 TRIM27P14373 513 aa15.1■□□□□ 0.01
CUX1-210ENST00000497815 PTGER2P43116 358 aa15.1■□□□□ 0.01
CUX1-210ENST00000497815 SUSD4Q5VX71 490 aa15.1■□□□□ 0.01
CUX1-210ENST00000497815 ATF7IPQ6VMQ6 1270 aa15.1■□□□□ 0.01
CUX1-210ENST00000497815 NLRP10Q86W26 655 aa15.1■□□□□ 0.01
CUX1-210ENST00000497815 NBPF5PQ86XG9 351 aaPredicted RBP15.1■□□□□ 0.01
CUX1-210ENST00000497815 CCDC24Q8N4L8 307 aa15.1■□□□□ 0.01
CUX1-210ENST00000497815 ARHGAP45Q92619 1136 aa15.1■□□□□ 0.01
CUX1-210ENST00000497815 ISCA1Q9BUE6 129 aa15.1■□□□□ 0.01
CUX1-210ENST00000497815 PARP10Q53GL7 1025 aa15.09■□□□□ 0.01
CUX1-210ENST00000497815 BEND3Q5T5X7 828 aa15.09■□□□□ 0.01
CUX1-210ENST00000497815 ANKRD36CQ5JPF3 1778 aa15.08■□□□□ 0.01
CUX1-210ENST00000497815 NEURL1BA8MQ27 555 aa15.08■□□□□ 0
CUX1-210ENST00000497815 GTF2E1P29083 439 aaPredicted RBP15.08■□□□□ 0
CUX1-210ENST00000497815 RTL5Q5HYW3 569 aaPredicted RBP15.08■□□□□ 0
CUX1-210ENST00000497815 PPP1R42Q7Z4L9 355 aa15.08■□□□□ 0
Retrieved 100 of 20,778 RNA–protein pairs in 8.2 ms