RNA–Protein interactions for RNA: ENST00000495426.1

BBS9-213, Transcript of Bardet-Biedl syndrome 9, human

TSL 3

Gene BBS9, Length 481 nt, Biotype retained intron.

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
BBS9-213	ENST00000495426	RAPGEF4	Q8WZA2	1011 aa		10.13	□□□□□ -0.79
BBS9-213	ENST00000495426	KDM4C	Q9H3R0	1056 aa		10.13	□□□□□ -0.79
BBS9-213	ENST00000495426	BCL2L12	Q9HB09	334 aa		10.13	□□□□□ -0.79
BBS9-213	ENST00000495426	WWC3	Q9ULE0	1092 aa		10.13	□□□□□ -0.79
BBS9-213	ENST00000495426	NSD3	Q9BZ95	1437 aa		10.13	□□□□□ -0.79
BBS9-213	ENST00000495426	ARFGEF1	Q9Y6D6	1849 aa		10.12	□□□□□ -0.79
BBS9-213	ENST00000495426	PTPRE	P23469	700 aa		10.12	□□□□□ -0.79
BBS9-213	ENST00000495426	RRS1	Q15050	365 aa	Known RBP	10.12	□□□□□ -0.79
BBS9-213	ENST00000495426	AMHR2	Q16671	573 aa		10.12	□□□□□ -0.79
BBS9-213	ENST00000495426	NBPF6	Q5VWK0	638 aa		10.12	□□□□□ -0.79
BBS9-213	ENST00000495426	FLAD1	Q8NFF5	587 aa		10.12	□□□□□ -0.79
BBS9-213	ENST00000495426	NBPF4	Q96M43	638 aa		10.12	□□□□□ -0.79
BBS9-213	ENST00000495426	C4A	P0C0L4	1744 aa		10.11	□□□□□ -0.79
BBS9-213	ENST00000495426	COL5A3	P25940	1745 aa	Predicted RBP	10.11	□□□□□ -0.79
BBS9-213	ENST00000495426	TAT	P17735	454 aa	Predicted RBP	10.11	□□□□□ -0.79
BBS9-213	ENST00000495426	PRSS12	P56730	875 aa		10.11	□□□□□ -0.79
BBS9-213	ENST00000495426	PUS7	Q96PZ0	661 aa	Known RBP	10.11	□□□□□ -0.79
BBS9-213	ENST00000495426	COL9A1	P20849	921 aa		10.1	□□□□□ -0.79
BBS9-213	ENST00000495426	AMIGO3	Q86WK7	504 aa		10.1	□□□□□ -0.79
BBS9-213	ENST00000495426	CDCA7L	Q96GN5	454 aa		10.1	□□□□□ -0.79
BBS9-213	ENST00000495426	FLT4	P35916	1363 aa		10.1	□□□□□ -0.79
BBS9-213	ENST00000495426	HMGB2	P26583	209 aa	Known RBP	10.09	□□□□□ -0.79
BBS9-213	ENST00000495426	TTLL12	Q14166	644 aa	Predicted RBP	10.09	□□□□□ -0.79
BBS9-213	ENST00000495426	FAM161A	Q3B820	660 aa		10.09	□□□□□ -0.79
BBS9-213	ENST00000495426	MPRIP	Q6WCQ1	1025 aa		10.09	□□□□□ -0.79
BBS9-213	ENST00000495426	RBM27	Q9P2N5	1060 aa	Known RBP	10.09	□□□□□ -0.79
BBS9-213	ENST00000495426	INSR	P06213	1382 aa		10.09	□□□□□ -0.79
BBS9-213	ENST00000495426	PXDNL	A1KZ92	1463 aa		10.09	□□□□□ -0.79
BBS9-213	ENST00000495426	ZNF831	Q5JPB2	1677 aa		10.09	□□□□□ -0.79
BBS9-213	ENST00000495426	NCAPD2	Q15021	1401 aa		10.08	□□□□□ -0.8
BBS9-213	ENST00000495426	RPL17-C18orf32	A0A0A6YYL6	228 aa	Known RBP	10.08	□□□□□ -0.8
BBS9-213	ENST00000495426	CYP27B1	O15528	508 aa		10.08	□□□□□ -0.8
BBS9-213	ENST00000495426	ST18	O60284	1047 aa		10.08	□□□□□ -0.8
BBS9-213	ENST00000495426	OAT	P04181	439 aa		10.08	□□□□□ -0.8
BBS9-213	ENST00000495426	SMIM5	Q71RC9	77 aa		10.08	□□□□□ -0.8
BBS9-213	ENST00000495426	IL27	Q8NEV9	243 aa		10.08	□□□□□ -0.8
BBS9-213	ENST00000495426	SMARCC1	Q92922	1105 aa	Predicted RBP	10.08	□□□□□ -0.8
BBS9-213	ENST00000495426	TESK2	Q96S53	571 aa		10.08	□□□□□ -0.8
BBS9-213	ENST00000495426	GGNBP2	Q9H3C7	697 aa		10.08	□□□□□ -0.8
BBS9-213	ENST00000495426	TONSL	Q96HA7	1378 aa		10.08	□□□□□ -0.8
BBS9-213	ENST00000495426	MYH14	Q7Z406	1995 aa	Known RBP	10.08	□□□□□ -0.8
BBS9-213	ENST00000495426	SBF1	O95248	1867 aa		10.07	□□□□□ -0.8
BBS9-213	ENST00000495426	TNRC6C	Q9HCJ0	1690 aa	Known RBP	10.07	□□□□□ -0.8
BBS9-213	ENST00000495426	KIF24	Q5T7B8	1368 aa		10.07	□□□□□ -0.8
BBS9-213	ENST00000495426	PPP1R3G	B7ZBB8	358 aa		10.07	□□□□□ -0.8
BBS9-213	ENST00000495426	SSFA2	P28290	1259 aa		10.07	□□□□□ -0.8
BBS9-213	ENST00000495426	PARP9	Q8IXQ6	854 aa		10.07	□□□□□ -0.8
BBS9-213	ENST00000495426	TTC13	Q8NBP0	860 aa		10.07	□□□□□ -0.8
BBS9-213	ENST00000495426	DAXX	Q9UER7	740 aa	Predicted RBP	10.07	□□□□□ -0.8
BBS9-213	ENST00000495426	PCNT	O95613	3336 aa		10.07	□□□□□ -0.8
BBS9-213	ENST00000495426	C10orf71	Q711Q0	1435 aa		10.07	□□□□□ -0.8
BBS9-213	ENST00000495426	ST20-MTHFS	A0A0A6YYL1	179 aa		10.06	□□□□□ -0.8
BBS9-213	ENST00000495426	HSP90AB2P	Q58FF8	381 aa		10.06	□□□□□ -0.8
BBS9-213	ENST00000495426	LINC00116	Q8NCU8	138 aa		10.06	□□□□□ -0.8
BBS9-213	ENST00000495426	KCNK17	Q96T54	332 aa		10.06	□□□□□ -0.8
BBS9-213	ENST00000495426	ADGRG1	Q9Y653	693 aa		10.06	□□□□□ -0.8
BBS9-213	ENST00000495426	VIRMA	Q69YN4	1812 aa	Known RBP	10.05	□□□□□ -0.8
BBS9-213	ENST00000495426	FYB1	O15117	783 aa		10.05	□□□□□ -0.8
BBS9-213	ENST00000495426	APLP1	P51693	650 aa		10.05	□□□□□ -0.8
BBS9-213	ENST00000495426	VARS2	Q5ST30	1063 aa	Known RBP	10.05	□□□□□ -0.8
BBS9-213	ENST00000495426	METTL3	Q86U44	580 aa	Known RBP	10.05	□□□□□ -0.8
BBS9-213	ENST00000495426	PIGB	Q92521	554 aa		10.05	□□□□□ -0.8
BBS9-213	ENST00000495426	FAM163A	Q96GL9	167 aa	Predicted RBP	10.05	□□□□□ -0.8
BBS9-213	ENST00000495426	PHOX2B	Q99453	314 aa		10.05	□□□□□ -0.8
BBS9-213	ENST00000495426	LOC102724428	A0A0B4J2F2	783 aa		10.04	□□□□□ -0.8
BBS9-213	ENST00000495426	EMP3	P54852	163 aa		10.04	□□□□□ -0.8
BBS9-213	ENST00000495426	SIK1	P57059	783 aa		10.04	□□□□□ -0.8
BBS9-213	ENST00000495426	MDM2	Q00987	491 aa	Predicted RBP	10.04	□□□□□ -0.8
BBS9-213	ENST00000495426	RBM46	Q8TBY0	533 aa	Known RBP	10.04	□□□□□ -0.8
BBS9-213	ENST00000495426	GTF3C3	Q9Y5Q9	886 aa		10.04	□□□□□ -0.8
BBS9-213	ENST00000495426	CCDC88A	Q3V6T2	1871 aa		10.04	□□□□□ -0.8
BBS9-213	ENST00000495426	KDR	P35968	1356 aa		10.03	□□□□□ -0.8
BBS9-213	ENST00000495426	MMP10	P09238	476 aa		10.03	□□□□□ -0.8
BBS9-213	ENST00000495426	CLCN1	P35523	988 aa		10.03	□□□□□ -0.8
BBS9-213	ENST00000495426	PXYLP1	Q8TE99	480 aa		10.03	□□□□□ -0.8
BBS9-213	ENST00000495426	MARVELD3	Q96A59	401 aa		10.03	□□□□□ -0.8
BBS9-213	ENST00000495426	TMOD3	Q9NYL9	352 aa		10.03	□□□□□ -0.8
BBS9-213	ENST00000495426	EMILIN1	Q9Y6C2	1016 aa		10.03	□□□□□ -0.8
BBS9-213	ENST00000495426	TJP1	Q07157	1748 aa		10.02	□□□□□ -0.8
BBS9-213	ENST00000495426	TIAM2	Q8IVF5	1701 aa		10.02	□□□□□ -0.8
BBS9-213	ENST00000495426	ITPK1	Q13572	414 aa		10.02	□□□□□ -0.81
BBS9-213	ENST00000495426	GIGYF2	Q6Y7W6	1299 aa	Known RBP	10.02	□□□□□ -0.81
BBS9-213	ENST00000495426	FAM117A	Q9C073	453 aa		10.02	□□□□□ -0.81
BBS9-213	ENST00000495426	GPCPD1	Q9NPB8	672 aa		10.02	□□□□□ -0.81
BBS9-213	ENST00000495426	FAM198A	Q9UFP1	575 aa		10.02	□□□□□ -0.81
BBS9-213	ENST00000495426	TSKS	Q9UJT2	592 aa		10.02	□□□□□ -0.81
BBS9-213	ENST00000495426	BCS1L	Q9Y276	419 aa		10.02	□□□□□ -0.81
BBS9-213	ENST00000495426	PLEKHG2	Q9H7P9	1386 aa		10.01	□□□□□ -0.81
BBS9-213	ENST00000495426	DLEC1	Q9Y238	1755 aa		10.01	□□□□□ -0.81
BBS9-213	ENST00000495426	AFDN	P55196	1824 aa	Known RBP	10.01	□□□□□ -0.81
BBS9-213	ENST00000495426	TOMM70	O94826	608 aa		10.01	□□□□□ -0.81
BBS9-213	ENST00000495426	ATP6V1A	P38606	617 aa		10.01	□□□□□ -0.81
BBS9-213	ENST00000495426	PACS2	Q86VP3	889 aa		10.01	□□□□□ -0.81
BBS9-213	ENST00000495426	REPIN1	Q9BWE0	567 aa	Known RBP	10.01	□□□□□ -0.81
BBS9-213	ENST00000495426	NMRK2	Q9NPI5	230 aa		10.01	□□□□□ -0.81
BBS9-213	ENST00000495426	ASAP1	Q9ULH1	1129 aa		10.01	□□□□□ -0.81
BBS9-213	ENST00000495426	SPG7	Q9UQ90	795 aa		10.01	□□□□□ -0.81
BBS9-213	ENST00000495426	FAM205C	A6NFA0	338 aa		10	□□□□□ -0.81
BBS9-213	ENST00000495426	TRIM6-TRIM34	B2RNG4	842 aa		10	□□□□□ -0.81
BBS9-213	ENST00000495426	PSEN2	P49810	448 aa		10	□□□□□ -0.81

Retrieved 100 of 20,778 RNA–protein pairs in 33.3 ms