RNA–Protein interactions for RNA: ENST00000494748.1

SDF4-207, Transcript of stromal cell derived factor 4, humanhuman

TSL 2

Gene SDF4, Length 3,516 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDF4-207ENST00000494748 SBNO1A3KN83 1393 aa18.37■□□□□ 0.53
SDF4-207ENST00000494748 TPM3P06753 285 aa18.36■□□□□ 0.53
SDF4-207ENST00000494748 TTC6Q86TZ1 520 aa18.36■□□□□ 0.53
SDF4-207ENST00000494748 KDM3BQ7LBC6 1761 aa18.36■□□□□ 0.53
SDF4-207ENST00000494748 PTGS1P23219 599 aa18.36■□□□□ 0.53
SDF4-207ENST00000494748 VPS53Q5VIR6 699 aa18.36■□□□□ 0.53
SDF4-207ENST00000494748 CWC27Q6UX04 472 aaKnown RBP18.36■□□□□ 0.53
SDF4-207ENST00000494748 ZSWIM6Q9HCJ5 1215 aa18.36■□□□□ 0.53
SDF4-207ENST00000494748 U2AF2P26368 475 aaKnown RBP eCLIP18.36■□□□□ 0.53
SDF4-207ENST00000494748 DIAPH3Q9NSV4 1193 aa18.36■□□□□ 0.53
SDF4-207ENST00000494748 FLT4P35916 1363 aa18.35■□□□□ 0.53
SDF4-207ENST00000494748 SPDYE4A6NLX3 237 aa18.35■□□□□ 0.53
SDF4-207ENST00000494748 SURF6O75683 361 aaKnown RBP18.35■□□□□ 0.53
SDF4-207ENST00000494748 ME3Q16798 604 aa18.35■□□□□ 0.53
SDF4-207ENST00000494748 TTC21AQ8NDW8 1320 aa18.35■□□□□ 0.53
SDF4-207ENST00000494748 HTATSF1O43719 755 aaKnown RBP18.35■□□□□ 0.53
SDF4-207ENST00000494748 PHAXQ9H814 394 aaKnown RBP18.35■□□□□ 0.53
SDF4-207ENST00000494748 MYH15Q9Y2K3 1946 aa18.35■□□□□ 0.53
SDF4-207ENST00000494748 LIG1P18858 919 aa18.35■□□□□ 0.53
SDF4-207ENST00000494748 PLCB2Q00722 1185 aa18.35■□□□□ 0.53
SDF4-207ENST00000494748 NCBP1Q09161 790 aaKnown RBP18.35■□□□□ 0.53
SDF4-207ENST00000494748 CNTROBQ8N137 903 aa18.35■□□□□ 0.53
SDF4-207ENST00000494748 FAM200AQ8TCP9 573 aa18.35■□□□□ 0.53
SDF4-207ENST00000494748 CCDC192P0DO97 292 aa18.34■□□□□ 0.53
SDF4-207ENST00000494748 UBR1Q8IWV7 1749 aa18.34■□□□□ 0.53
SDF4-207ENST00000494748 MED1Q15648 1581 aaPredicted RBP18.34■□□□□ 0.53
SDF4-207ENST00000494748 TM6SF1Q9BZW5 370 aa18.34■□□□□ 0.53
SDF4-207ENST00000494748 IL17REQ8NFR9 667 aa18.33■□□□□ 0.53
SDF4-207ENST00000494748 RBM43Q6ZSC3 357 aaKnown RBP18.33■□□□□ 0.53
SDF4-207ENST00000494748 KIF1BPQ96EK5 621 aa18.33■□□□□ 0.53
SDF4-207ENST00000494748 ELP1O95163 1332 aa18.33■□□□□ 0.52
SDF4-207ENST00000494748 LUZP1Q86V48 1076 aa18.33■□□□□ 0.52
SDF4-207ENST00000494748 ADAMTS13Q76LX8 1427 aa18.33■□□□□ 0.52
SDF4-207ENST00000494748 NBPF7P0C2Y1 421 aaPredicted RBP18.32■□□□□ 0.52
SDF4-207ENST00000494748 TYRO3Q06418 890 aa18.32■□□□□ 0.52
SDF4-207ENST00000494748 LRMPQ12912 555 aa18.32■□□□□ 0.52
SDF4-207ENST00000494748 NECTIN1Q15223 517 aa18.32■□□□□ 0.52
SDF4-207ENST00000494748 PDRG1Q9NUG6 133 aa18.32■□□□□ 0.52
SDF4-207ENST00000494748 PLA2G4DQ86XP0 818 aa18.32■□□□□ 0.52
SDF4-207ENST00000494748 PPP6R1Q9UPN7 881 aa18.32■□□□□ 0.52
SDF4-207ENST00000494748 SOX12O15370 315 aa18.32■□□□□ 0.52
SDF4-207ENST00000494748 CDC37L1Q7L3B6 337 aa18.32■□□□□ 0.52
SDF4-207ENST00000494748 JAKMIP1Q96N16 626 aaKnown RBP18.32■□□□□ 0.52
SDF4-207ENST00000494748 SH2B1Q9NRF2 756 aaPredicted RBP18.32■□□□□ 0.52
SDF4-207ENST00000494748 TPCN1Q9ULQ1 816 aa18.32■□□□□ 0.52
SDF4-207ENST00000494748 USP54Q70EL1 1684 aa18.31■□□□□ 0.52
SDF4-207ENST00000494748 ADGRL3Q9HAR2 1447 aa18.31■□□□□ 0.52
SDF4-207ENST00000494748 NRBP1Q9UHY1 535 aa18.31■□□□□ 0.52
SDF4-207ENST00000494748 CCDC171Q6TFL3 1326 aa18.31■□□□□ 0.52
SDF4-207ENST00000494748 PTPRUQ92729 1446 aa18.31■□□□□ 0.52
SDF4-207ENST00000494748 KIF20AO95235 890 aa18.31■□□□□ 0.52
SDF4-207ENST00000494748 NECAB1Q8N987 351 aa18.31■□□□□ 0.52
SDF4-207ENST00000494748 ZSCAN31Q96LW9 406 aaPredicted RBP18.31■□□□□ 0.52
SDF4-207ENST00000494748 SRGAP3O43295 1099 aa18.31■□□□□ 0.52
SDF4-207ENST00000494748 CBX8Q9HC52 389 aa18.31■□□□□ 0.52
SDF4-207ENST00000494748 SYCP1Q15431 976 aa18.3■□□□□ 0.52
SDF4-207ENST00000494748 PRPF40BQ6NWY9 871 aaKnown RBP18.3■□□□□ 0.52
SDF4-207ENST00000494748 TTC41PQ6P2S7 1318 aa18.3■□□□□ 0.52
SDF4-207ENST00000494748 DIP2BQ9P265 1576 aa18.3■□□□□ 0.52
SDF4-207ENST00000494748 GNAT3A8MTJ3 354 aa18.3■□□□□ 0.52
SDF4-207ENST00000494748 FAM173BQ6P4H8 233 aa18.3■□□□□ 0.52
SDF4-207ENST00000494748 GOLGA6L6A8MZA4 724 aa18.29■□□□□ 0.52
SDF4-207ENST00000494748 MAP3K11Q16584 847 aa18.29■□□□□ 0.52
SDF4-207ENST00000494748 VPS37CA5D8V6 355 aaPredicted RBP18.29■□□□□ 0.52
SDF4-207ENST00000494748 CAMK4Q16566 473 aa18.29■□□□□ 0.52
SDF4-207ENST00000494748 CCDC186Q7Z3E2 898 aa18.29■□□□□ 0.52
SDF4-207ENST00000494748 NUP62CLQ9H1M0 184 aa18.29■□□□□ 0.52
SDF4-207ENST00000494748 CTNNA3Q9UI47 895 aa18.29■□□□□ 0.52
SDF4-207ENST00000494748 CHAF1AQ13111 956 aaPredicted RBP18.28■□□□□ 0.52
SDF4-207ENST00000494748 NPHP4O75161 1426 aaPredicted RBP18.28■□□□□ 0.52
SDF4-207ENST00000494748 BEND3Q5T5X7 828 aa18.28■□□□□ 0.52
SDF4-207ENST00000494748 ZSCAN25Q6NSZ9 544 aa18.28■□□□□ 0.52
SDF4-207ENST00000494748 ZNF75DP51815 510 aa18.28■□□□□ 0.52
SDF4-207ENST00000494748 DDX54Q8TDD1 881 aaKnown RBP18.28■□□□□ 0.52
SDF4-207ENST00000494748 BABAM1Q9NWV8 329 aa18.28■□□□□ 0.52
SDF4-207ENST00000494748 CYP46A1Q9Y6A2 500 aa18.28■□□□□ 0.52
SDF4-207ENST00000494748 NUTM2FA1L443 756 aa18.27■□□□□ 0.52
SDF4-207ENST00000494748 ANO6Q4KMQ2 910 aa18.27■□□□□ 0.52
SDF4-207ENST00000494748 TDRD7Q8NHU6 1098 aaKnown RBP18.27■□□□□ 0.52
SDF4-207ENST00000494748 GLRX3O76003 335 aaKnown RBP18.27■□□□□ 0.52
SDF4-207ENST00000494748 FEZ1Q99689 392 aa18.27■□□□□ 0.52
SDF4-207ENST00000494748 SMTNL1A8MU46 457 aa18.27■□□□□ 0.51
SDF4-207ENST00000494748 NAA30Q147X3 362 aaPredicted RBP18.26■□□□□ 0.51
SDF4-207ENST00000494748 CKAP2LQ8IYA6 745 aa18.26■□□□□ 0.51
SDF4-207ENST00000494748 SNRKQ9NRH2 765 aa18.26■□□□□ 0.51
SDF4-207ENST00000494748 DACT1Q9NYF0 836 aa18.26■□□□□ 0.51
SDF4-207ENST00000494748 KRT85P78386 507 aa18.26■□□□□ 0.51
SDF4-207ENST00000494748 TAF7Q15545 349 aaPredicted RBP18.26■□□□□ 0.51
SDF4-207ENST00000494748 CCDC144BQ3MJ40 725 aa18.26■□□□□ 0.51
SDF4-207ENST00000494748 HDGFL1Q5TGJ6 251 aa18.26■□□□□ 0.51
SDF4-207ENST00000494748 FERMT3Q86UX7 667 aa18.26■□□□□ 0.51
SDF4-207ENST00000494748 CCDC144CPQ8IYA2 1237 aa18.26■□□□□ 0.51
SDF4-207ENST00000494748 C16orf45Q96MC5 204 aaPredicted RBP18.26■□□□□ 0.51
SDF4-207ENST00000494748 ADCY9O60503 1353 aa18.25■□□□□ 0.51
SDF4-207ENST00000494748 MTX1Q13505 466 aa18.25■□□□□ 0.51
SDF4-207ENST00000494748 CREB3L3Q68CJ9 461 aa18.25■□□□□ 0.51
SDF4-207ENST00000494748 CHMP3Q9Y3E7 222 aa18.25■□□□□ 0.51
SDF4-207ENST00000494748 TAF6LQ9Y6J9 622 aa18.25■□□□□ 0.51
SDF4-207ENST00000494748 LARP1BQ659C4 914 aaKnown RBP18.25■□□□□ 0.51
SDF4-207ENST00000494748 ARHGAP30Q7Z6I6 1101 aaPredicted RBP18.25■□□□□ 0.51
Retrieved 100 of 20,778 RNA–protein pairs in 90.5 ms