RNA–Protein interactions for RNA: ENST00000493727.5

UPF3A-210, Transcript of UPF3A, regulator of nonsense mediated mRNA decay, humanhuman

TSL 5

Gene UPF3A, Length 937 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3A-210ENST00000493727 NCAPD2Q15021 1401 aa16.36■□□□□ 0.21
UPF3A-210ENST00000493727 AMIGO3Q86WK7 504 aa16.35■□□□□ 0.21
UPF3A-210ENST00000493727 EMILIN1Q9Y6C2 1016 aa16.35■□□□□ 0.21
UPF3A-210ENST00000493727 FLAD1Q8NFF5 587 aa16.34■□□□□ 0.21
UPF3A-210ENST00000493727 CICQ96RK0 1608 aaPredicted RBP16.34■□□□□ 0.21
UPF3A-210ENST00000493727 GRXCR2A6NFK2 248 aa16.33■□□□□ 0.2
UPF3A-210ENST00000493727 PPM1GO15355 546 aaPredicted RBP16.33■□□□□ 0.2
UPF3A-210ENST00000493727 CYP27B1O15528 508 aa16.33■□□□□ 0.2
UPF3A-210ENST00000493727 PPP4R3BQ5MIZ7 849 aa16.33■□□□□ 0.2
UPF3A-210ENST00000493727 EPAS1Q99814 870 aa16.32■□□□□ 0.2
UPF3A-210ENST00000493727 NPC1L1Q9UHC9 1359 aa16.32■□□□□ 0.2
UPF3A-210ENST00000493727 SPG7Q9UQ90 795 aa16.32■□□□□ 0.2
UPF3A-210ENST00000493727 KIF13BQ9NQT8 1826 aa16.31■□□□□ 0.2
UPF3A-210ENST00000493727 KIAA1551Q9HCM1 1747 aa16.31■□□□□ 0.2
UPF3A-210ENST00000493727 PLEKHG2Q9H7P9 1386 aa16.31■□□□□ 0.2
UPF3A-210ENST00000493727 OSBPP22059 807 aa16.31■□□□□ 0.2
UPF3A-210ENST00000493727 MORC1Q86VD1 984 aa16.31■□□□□ 0.2
UPF3A-210ENST00000493727 ZNF687Q8N1G0 1237 aa16.31■□□□□ 0.2
UPF3A-210ENST00000493727 SMARCC1Q92922 1105 aaPredicted RBP16.31■□□□□ 0.2
UPF3A-210ENST00000493727 NBR1Q14596 966 aa16.3■□□□□ 0.2
UPF3A-210ENST00000493727 TYW1BQ6NUM6 668 aa16.3■□□□□ 0.2
UPF3A-210ENST00000493727 MPRIPQ6WCQ1 1025 aa16.3■□□□□ 0.2
UPF3A-210ENST00000493727 ZDHHC16Q969W1 377 aa16.3■□□□□ 0.2
UPF3A-210ENST00000493727 GPBP1L1Q9HC44 474 aaPredicted RBP16.3■□□□□ 0.2
UPF3A-210ENST00000493727 IGSF1Q8N6C5 1336 aa16.29■□□□□ 0.2
UPF3A-210ENST00000493727 RALBP1Q15311 655 aa16.29■□□□□ 0.2
UPF3A-210ENST00000493727 PRKRIP1Q9H875 184 aaPredicted RBP16.29■□□□□ 0.2
UPF3A-210ENST00000493727 POLKQ9UBT6 870 aa16.29■□□□□ 0.2
UPF3A-210ENST00000493727 AK7Q96M32 723 aa16.28■□□□□ 0.2
UPF3A-210ENST00000493727 EYA1Q99502 592 aa16.28■□□□□ 0.2
UPF3A-210ENST00000493727 ADAM33Q9BZ11 813 aa16.28■□□□□ 0.2
UPF3A-210ENST00000493727 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP16.27■□□□□ 0.2
UPF3A-210ENST00000493727 HSPA6P17066 643 aa16.27■□□□□ 0.2
UPF3A-210ENST00000493727 PIGBQ92521 554 aa16.27■□□□□ 0.2
UPF3A-210ENST00000493727 FBXW7Q969H0 707 aa16.27■□□□□ 0.2
UPF3A-210ENST00000493727 SSFA2P28290 1259 aa16.26■□□□□ 0.19
UPF3A-210ENST00000493727 TNNT2P45379 298 aaPredicted RBP16.26■□□□□ 0.19
UPF3A-210ENST00000493727 POTEEQ6S8J3 1075 aa16.26■□□□□ 0.19
UPF3A-210ENST00000493727 SMIM5Q71RC9 77 aa16.26■□□□□ 0.19
UPF3A-210ENST00000493727 IFNL2Q8IZJ0 200 aa16.25■□□□□ 0.19
UPF3A-210ENST00000493727 LINC00116Q8NCU8 138 aa16.25■□□□□ 0.19
UPF3A-210ENST00000493727 BCL2L12Q9HB09 334 aa16.25■□□□□ 0.19
UPF3A-210ENST00000493727 BRCA1P38398 1863 aaKnown RBP16.25■□□□□ 0.19
UPF3A-210ENST00000493727 MYBBP1AQ9BQG0 1328 aaKnown RBP16.24■□□□□ 0.19
UPF3A-210ENST00000493727 LOC102724428A0A0B4J2F2 783 aa16.24■□□□□ 0.19
UPF3A-210ENST00000493727 SIK1P57059 783 aa16.24■□□□□ 0.19
UPF3A-210ENST00000493727 ZNF526Q8TF50 670 aaPredicted RBP16.24■□□□□ 0.19
UPF3A-210ENST00000493727 ZNF831Q5JPB2 1677 aa16.24■□□□□ 0.19
UPF3A-210ENST00000493727 N4BP2Q86UW6 1770 aaPredicted RBP16.23■□□□□ 0.19
UPF3A-210ENST00000493727 PXDNLA1KZ92 1463 aa16.23■□□□□ 0.19
UPF3A-210ENST00000493727 COL5A3P25940 1745 aaPredicted RBP16.23■□□□□ 0.19
UPF3A-210ENST00000493727 EIF4A2Q14240 407 aaKnown RBP16.23■□□□□ 0.19
UPF3A-210ENST00000493727 TMOD3Q9NYL9 352 aa16.23■□□□□ 0.19
UPF3A-210ENST00000493727 WWC3Q9ULE0 1092 aa16.23■□□□□ 0.19
UPF3A-210ENST00000493727 ITPK1Q13572 414 aa16.22■□□□□ 0.19
UPF3A-210ENST00000493727 KDRP35968 1356 aa16.22■□□□□ 0.19
UPF3A-210ENST00000493727 HSP90AB1P08238 724 aaKnown RBP16.21■□□□□ 0.19
UPF3A-210ENST00000493727 PHKG2P15735 406 aa16.21■□□□□ 0.19
UPF3A-210ENST00000493727 SMYD5Q6GMV2 418 aa16.21■□□□□ 0.19
UPF3A-210ENST00000493727 C10orf71Q711Q0 1435 aa16.2■□□□□ 0.18
UPF3A-210ENST00000493727 C4AP0C0L4 1744 aa16.19■□□□□ 0.18
UPF3A-210ENST00000493727 MYH14Q7Z406 1995 aaKnown RBP16.19■□□□□ 0.18
UPF3A-210ENST00000493727 GNPATO15228 680 aa16.19■□□□□ 0.18
UPF3A-210ENST00000493727 PPP2R1AP30153 589 aa16.19■□□□□ 0.18
UPF3A-210ENST00000493727 CDAN1Q8IWY9 1227 aa16.19■□□□□ 0.18
UPF3A-210ENST00000493727 ASAP1Q9ULH1 1129 aa16.19■□□□□ 0.18
UPF3A-210ENST00000493727 ARFGEF1Q9Y6D6 1849 aa16.18■□□□□ 0.18
UPF3A-210ENST00000493727 PBX2P40425 430 aa16.18■□□□□ 0.18
UPF3A-210ENST00000493727 AMOTQ4VCS5 1084 aa16.18■□□□□ 0.18
UPF3A-210ENST00000493727 PLEKHO1Q53GL0 409 aaPredicted RBP16.18■□□□□ 0.18
UPF3A-210ENST00000493727 PCNTO95613 3336 aa16.17■□□□□ 0.18
UPF3A-210ENST00000493727 ERVV-2B6SEH9 535 aa16.17■□□□□ 0.18
UPF3A-210ENST00000493727 MMP10P09238 476 aa16.17■□□□□ 0.18
UPF3A-210ENST00000493727 C6orf132Q5T0Z8 1188 aa16.17■□□□□ 0.18
UPF3A-210ENST00000493727 ARHGAP33O14559 1287 aa16.16■□□□□ 0.18
UPF3A-210ENST00000493727 MAP3K7O43318 606 aa16.16■□□□□ 0.18
UPF3A-210ENST00000493727 ATP6V1AP38606 617 aa16.16■□□□□ 0.18
UPF3A-210ENST00000493727 DCAF5Q96JK2 942 aa16.16■□□□□ 0.18
UPF3A-210ENST00000493727 MRS2Q9HD23 443 aa16.16■□□□□ 0.18
UPF3A-210ENST00000493727 ATG3Q9NT62 314 aa16.16■□□□□ 0.18
UPF3A-210ENST00000493727 CCER2I3L3R5 266 aa16.15■□□□□ 0.18
UPF3A-210ENST00000493727 TSR1Q2NL82 804 aaKnown RBP16.15■□□□□ 0.18
UPF3A-210ENST00000493727 CFAP53Q96M91 514 aa16.15■□□□□ 0.18
UPF3A-210ENST00000493727 SLC4A9Q96Q91 983 aa16.15■□□□□ 0.18
UPF3A-210ENST00000493727 KRTAP3-3Q9BYR6 98 aa16.15■□□□□ 0.18
UPF3A-210ENST00000493727 KRTAP3-2Q9BYR7 98 aa16.15■□□□□ 0.18
UPF3A-210ENST00000493727 PTPREP23469 700 aa16.14■□□□□ 0.17
UPF3A-210ENST00000493727 PSEN2P49810 448 aa16.14■□□□□ 0.17
UPF3A-210ENST00000493727 MTHFSP49914 203 aa16.14■□□□□ 0.17
UPF3A-210ENST00000493727 TGFB2P61812 414 aa16.14■□□□□ 0.17
UPF3A-210ENST00000493727 RBM26Q5T8P6 1007 aaKnown RBP16.14■□□□□ 0.17
UPF3A-210ENST00000493727 ZNF530Q6P9A1 599 aaPredicted RBP16.14■□□□□ 0.17
UPF3A-210ENST00000493727 KCNK17Q96T54 332 aa16.14■□□□□ 0.17
UPF3A-210ENST00000493727 WDR90Q96KV7 1748 aa16.14■□□□□ 0.17
UPF3A-210ENST00000493727 C1orf141Q5JVX7 400 aa16.13■□□□□ 0.17
UPF3A-210ENST00000493727 DHX30Q7L2E3 1194 aaKnown RBP eCLIP16.12■□□□□ 0.17
UPF3A-210ENST00000493727 CNTNAP4Q9C0A0 1308 aa16.12■□□□□ 0.17
UPF3A-210ENST00000493727 KDM6AO15550 1401 aaPredicted RBP16.11■□□□□ 0.17
UPF3A-210ENST00000493727 SCN11AQ9UI33 1791 aa16.11■□□□□ 0.17
UPF3A-210ENST00000493727 TOMM70O94826 608 aa16.11■□□□□ 0.17
Retrieved 100 of 20,778 RNA–protein pairs in 23.5 ms