RNA–Protein interactions for RNA: ENST00000493265.2

LIME1-208, Transcript of Lck interacting transmembrane adaptor 1, humanhuman

APPRIS ALT2 TSL 2

Gene LIME1, Length 661 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIME1-208ENST00000493265 RPS6KA4O75676 772 aa21.99■■□□□ 1.11
LIME1-208ENST00000493265 G2E3Q7L622 706 aa21.99■■□□□ 1.11
LIME1-208ENST00000493265 AMIGO3Q86WK7 504 aa21.99■■□□□ 1.11
LIME1-208ENST00000493265 FLAD1Q8NFF5 587 aa21.99■■□□□ 1.11
LIME1-208ENST00000493265 HYPKQ9NX55 129 aa21.99■■□□□ 1.11
LIME1-208ENST00000493265 IL6STP40189 918 aaPredicted RBP21.98■■□□□ 1.11
LIME1-208ENST00000493265 XAGE3Q8WTP9 111 aa21.98■■□□□ 1.11
LIME1-208ENST00000493265 CENPBP07199 599 aaPredicted RBP21.97■■□□□ 1.11
LIME1-208ENST00000493265 COPS6Q7L5N1 327 aa21.97■■□□□ 1.11
LIME1-208ENST00000493265 FRAT1Q92837 279 aaPredicted RBP21.97■■□□□ 1.11
LIME1-208ENST00000493265 COL15A1P39059 1388 aa21.97■■□□□ 1.11
LIME1-208ENST00000493265 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP21.96■■□□□ 1.11
LIME1-208ENST00000493265 EIF5P55010 431 aaKnown RBP21.96■■□□□ 1.11
LIME1-208ENST00000493265 TTLL7Q6ZT98 887 aa21.96■■□□□ 1.11
LIME1-208ENST00000493265 TBC1D2BQ9UPU7 963 aa21.96■■□□□ 1.11
LIME1-208ENST00000493265 TRAPPC3LQ5T215 181 aa21.95■■□□□ 1.1
LIME1-208ENST00000493265 LRP10Q7Z4F1 713 aa21.95■■□□□ 1.1
LIME1-208ENST00000493265 CD2APQ9Y5K6 639 aa21.95■■□□□ 1.1
LIME1-208ENST00000493265 FLIIQ13045 1269 aa21.94■■□□□ 1.1
LIME1-208ENST00000493265 KIF6Q6ZMV9 814 aa21.94■■□□□ 1.1
LIME1-208ENST00000493265 DZIP3Q86Y13 1208 aaKnown RBP21.94■■□□□ 1.1
LIME1-208ENST00000493265 ARHGEF1Q92888 912 aaKnown RBP21.94■■□□□ 1.1
LIME1-208ENST00000493265 NOB1Q9ULX3 412 aaKnown RBP21.94■■□□□ 1.1
LIME1-208ENST00000493265 ATP10DQ9P241 1426 aa21.94■■□□□ 1.1
LIME1-208ENST00000493265 FKBP5Q13451 457 aaPredicted RBP21.93■■□□□ 1.1
LIME1-208ENST00000493265 ZBTB3Q9H5J0 574 aa21.93■■□□□ 1.1
LIME1-208ENST00000493265 WWC3Q9ULE0 1092 aa21.93■■□□□ 1.1
LIME1-208ENST00000493265 A0A087WZG4 1122 aa21.92■■□□□ 1.1
LIME1-208ENST00000493265 SSFA2P28290 1259 aa21.92■■□□□ 1.1
LIME1-208ENST00000493265 RFC4P35249 363 aa21.92■■□□□ 1.1
LIME1-208ENST00000493265 SRP68Q9UHB9 627 aaKnown RBP21.92■■□□□ 1.1
LIME1-208ENST00000493265 KIF16BQ96L93 1317 aa21.9■■□□□ 1.1
LIME1-208ENST00000493265 ZPR1O75312 459 aa21.9■■□□□ 1.1
LIME1-208ENST00000493265 DDX58O95786 925 aaKnown RBP21.9■■□□□ 1.1
LIME1-208ENST00000493265 RIC3Q7Z5B4 369 aa21.9■■□□□ 1.1
LIME1-208ENST00000493265 PLIN1O60240 522 aa21.89■■□□□ 1.09
LIME1-208ENST00000493265 ADRA2BP18089 450 aa21.89■■□□□ 1.09
LIME1-208ENST00000493265 ANKRD13DQ6ZTN6 518 aa21.89■■□□□ 1.09
LIME1-208ENST00000493265 CACNA1FO60840 1977 aa21.88■■□□□ 1.09
LIME1-208ENST00000493265 PI4KAP2A4QPH2 592 aa21.88■■□□□ 1.09
LIME1-208ENST00000493265 F6X3S4 739 aa21.88■■□□□ 1.09
LIME1-208ENST00000493265 USPL1Q5W0Q7 1092 aa21.88■■□□□ 1.09
LIME1-208ENST00000493265 PI4KAP1Q8N8J0 262 aa21.88■■□□□ 1.09
LIME1-208ENST00000493265 C4AP0C0L4 1744 aa21.88■■□□□ 1.09
LIME1-208ENST00000493265 MAP3K15Q6ZN16 1313 aa21.87■■□□□ 1.09
LIME1-208ENST00000493265 IPO8O15397 1037 aaKnown RBP21.87■■□□□ 1.09
LIME1-208ENST00000493265 ZNF526Q8TF50 670 aaPredicted RBP21.87■■□□□ 1.09
LIME1-208ENST00000493265 NARFQ9UHQ1 456 aa21.87■■□□□ 1.09
LIME1-208ENST00000493265 TNNQ9UQP3 1299 aa21.87■■□□□ 1.09
LIME1-208ENST00000493265 MAP3K2Q9Y2U5 619 aa21.87■■□□□ 1.09
LIME1-208ENST00000493265 SUPT16HQ9Y5B9 1047 aaKnown RBP21.87■■□□□ 1.09
LIME1-208ENST00000493265 PTPRCP08575 1304 aa21.86■■□□□ 1.09
LIME1-208ENST00000493265 CAMTA2O94983 1202 aa21.86■■□□□ 1.09
LIME1-208ENST00000493265 BRPF1P55201 1214 aaPredicted RBP21.86■■□□□ 1.09
LIME1-208ENST00000493265 HLFQ16534 295 aa21.86■■□□□ 1.09
LIME1-208ENST00000493265 ZKSCAN2Q63HK3 967 aa21.86■■□□□ 1.09
LIME1-208ENST00000493265 SLC4A10Q6U841 1118 aa21.86■■□□□ 1.09
LIME1-208ENST00000493265 KSR2Q6VAB6 950 aa21.86■■□□□ 1.09
LIME1-208ENST00000493265 PLBD2Q8NHP8 589 aa21.86■■□□□ 1.09
LIME1-208ENST00000493265 CLUAP1Q96AJ1 413 aa21.86■■□□□ 1.09
LIME1-208ENST00000493265 ADCY9O60503 1353 aa21.86■■□□□ 1.09
LIME1-208ENST00000493265 USP42Q9H9J4 1324 aaKnown RBP21.85■■□□□ 1.09
LIME1-208ENST00000493265 GPBP1L1Q9HC44 474 aaPredicted RBP21.85■■□□□ 1.09
LIME1-208ENST00000493265 GOLGA6L2Q8N9W4 650 aaPredicted RBP21.84■■□□□ 1.09
LIME1-208ENST00000493265 MYD88Q99836 296 aa21.84■■□□□ 1.09
LIME1-208ENST00000493265 API5Q9BZZ5 524 aaKnown RBP21.84■■□□□ 1.09
LIME1-208ENST00000493265 ERVV-1B6SEH8 477 aa21.83■■□□□ 1.09
LIME1-208ENST00000493265 TRIM27P14373 513 aa21.83■■□□□ 1.09
LIME1-208ENST00000493265 ATF7IPQ6VMQ6 1270 aa21.83■■□□□ 1.09
LIME1-208ENST00000493265 BICDL1Q6ZP65 573 aa21.83■■□□□ 1.09
LIME1-208ENST00000493265 DNAAF4Q8WXU2 420 aa21.83■■□□□ 1.09
LIME1-208ENST00000493265 ARFGEF2Q9Y6D5 1785 aa21.83■■□□□ 1.09
LIME1-208ENST00000493265 SCN7AQ01118 1682 aa21.82■■□□□ 1.08
LIME1-208ENST00000493265 BCORQ6W2J9 1755 aa21.82■■□□□ 1.08
LIME1-208ENST00000493265 GPTP24298 496 aa21.82■■□□□ 1.08
LIME1-208ENST00000493265 RRP1P56182 461 aaKnown RBP21.82■■□□□ 1.08
LIME1-208ENST00000493265 ARHGAP45Q92619 1136 aa21.82■■□□□ 1.08
LIME1-208ENST00000493265 BCL2L12Q9HB09 334 aa21.82■■□□□ 1.08
LIME1-208ENST00000493265 ZNF652Q9Y2D9 606 aa21.82■■□□□ 1.08
LIME1-208ENST00000493265 CEP350Q5VT06 3117 aa21.82■■□□□ 1.08
LIME1-208ENST00000493265 ATP5J2-PTCD1G3V325 749 aa21.81■■□□□ 1.08
LIME1-208ENST00000493265 GYS1P13807 737 aa21.81■■□□□ 1.08
LIME1-208ENST00000493265 FKBP8Q14318 412 aa21.81■■□□□ 1.08
LIME1-208ENST00000493265 GIGYF2Q6Y7W6 1299 aaKnown RBP21.81■■□□□ 1.08
LIME1-208ENST00000493265 FTSJ3Q8IY81 847 aaKnown RBP21.81■■□□□ 1.08
LIME1-208ENST00000493265 N4BP2Q86UW6 1770 aaPredicted RBP21.81■■□□□ 1.08
LIME1-208ENST00000493265 NEXNQ0ZGT2 675 aa21.8■■□□□ 1.08
LIME1-208ENST00000493265 METTL22Q9BUU2 404 aaPredicted RBP21.8■■□□□ 1.08
LIME1-208ENST00000493265 KIF13BQ9NQT8 1826 aa21.8■■□□□ 1.08
LIME1-208ENST00000493265 NUP98P52948 1817 aa21.79■■□□□ 1.08
LIME1-208ENST00000493265 FAM177BA6PVY3 158 aa21.79■■□□□ 1.08
LIME1-208ENST00000493265 MMP10P09238 476 aa21.79■■□□□ 1.08
LIME1-208ENST00000493265 TBC1D9BQ66K14 1250 aa21.79■■□□□ 1.08
LIME1-208ENST00000493265 PANK1Q8TE04 598 aa21.79■■□□□ 1.08
LIME1-208ENST00000493265 KIAA1551Q9HCM1 1747 aa21.79■■□□□ 1.08
LIME1-208ENST00000493265 TCIRG1Q13488 830 aa21.78■■□□□ 1.08
LIME1-208ENST00000493265 C20orf194Q5TEA3 1177 aa21.78■■□□□ 1.08
LIME1-208ENST00000493265 DZIP1LQ8IYY4 767 aaKnown RBP21.78■■□□□ 1.08
LIME1-208ENST00000493265 NIP7Q9Y221 180 aaKnown RBP eCLIP21.78■■□□□ 1.08
LIME1-208ENST00000493265 CWF19L2Q2TBE0 894 aaKnown RBP21.77■■□□□ 1.08
Retrieved 100 of 20,778 RNA–protein pairs in 14.8 ms