RNA–Protein interactions for RNA: ENST00000493177.1

MSH6-208, Transcript of mutS homolog 6, humanhuman

TSL 3

Gene MSH6, Length 813 nt, Biotype processed transcript, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSH6-208ENST00000493177 EIF4A1P60842 406 aaKnown RBP17.28■□□□□ 0.36
MSH6-208ENST00000493177 NFIXQ14938 502 aa17.28■□□□□ 0.36
MSH6-208ENST00000493177 DZIP3Q86Y13 1208 aaKnown RBP17.28■□□□□ 0.36
MSH6-208ENST00000493177 BRCA1P38398 1863 aaKnown RBP17.28■□□□□ 0.36
MSH6-208ENST00000493177 SERPINB2P05120 415 aa17.27■□□□□ 0.36
MSH6-208ENST00000493177 DPEP1P16444 411 aa17.27■□□□□ 0.36
MSH6-208ENST00000493177 TM4SF1P30408 202 aa17.27■□□□□ 0.36
MSH6-208ENST00000493177 KRT24Q2M2I5 525 aa17.27■□□□□ 0.36
MSH6-208ENST00000493177 C8orf58Q8NAV2 365 aa17.26■□□□□ 0.35
MSH6-208ENST00000493177 NRXN2Q9P2S2 1712 aa17.25■□□□□ 0.35
MSH6-208ENST00000493177 TWISTNBQ3B726 338 aaPredicted RBP17.25■□□□□ 0.35
MSH6-208ENST00000493177 TSPYL6Q8N831 410 aa17.25■□□□□ 0.35
MSH6-208ENST00000493177 BCL2L12Q9HB09 334 aa17.25■□□□□ 0.35
MSH6-208ENST00000493177 ZNF652Q9Y2D9 606 aa17.25■□□□□ 0.35
MSH6-208ENST00000493177 ARFGEF1Q9Y6D6 1849 aa17.25■□□□□ 0.35
MSH6-208ENST00000493177 TBC1D9BQ66K14 1250 aa17.24■□□□□ 0.35
MSH6-208ENST00000493177 ZNF784Q8NCA9 323 aaPredicted RBP17.24■□□□□ 0.35
MSH6-208ENST00000493177 PIM2Q9P1W9 311 aa17.24■□□□□ 0.35
MSH6-208ENST00000493177 SETDB2Q96T68 719 aa17.23■□□□□ 0.35
MSH6-208ENST00000493177 CARMIL3Q8ND23 1372 aa17.23■□□□□ 0.35
MSH6-208ENST00000493177 CAMTA2O94983 1202 aa17.22■□□□□ 0.35
MSH6-208ENST00000493177 CT47B1P0C2W7 299 aaPredicted RBP17.22■□□□□ 0.35
MSH6-208ENST00000493177 EIF2S2P20042 333 aaKnown RBP17.22■□□□□ 0.35
MSH6-208ENST00000493177 CHRNA5P30532 468 aa17.22■□□□□ 0.35
MSH6-208ENST00000493177 DLEC1Q9Y238 1755 aa17.22■□□□□ 0.35
MSH6-208ENST00000493177 CACNA1SQ13698 1873 aa17.22■□□□□ 0.35
MSH6-208ENST00000493177 VAMP4O75379 141 aa17.21■□□□□ 0.35
MSH6-208ENST00000493177 GIGYF1O75420 1035 aaPredicted RBP17.21■□□□□ 0.35
MSH6-208ENST00000493177 MYL6BP14649 208 aa17.21■□□□□ 0.35
MSH6-208ENST00000493177 DALRD3Q5D0E6 543 aaKnown RBP17.21■□□□□ 0.35
MSH6-208ENST00000493177 ARHGAP27Q6ZUM4 889 aa17.21■□□□□ 0.35
MSH6-208ENST00000493177 NECTIN2Q92692 538 aa17.21■□□□□ 0.35
MSH6-208ENST00000493177 NUP98P52948 1817 aa17.2■□□□□ 0.34
MSH6-208ENST00000493177 ST5P78524 1137 aa17.2■□□□□ 0.34
MSH6-208ENST00000493177 KIF6Q6ZMV9 814 aa17.2■□□□□ 0.34
MSH6-208ENST00000493177 RCAN3Q9UKA8 241 aa17.2■□□□□ 0.34
MSH6-208ENST00000493177 ANKRD31Q8N7Z5 1873 aa17.19■□□□□ 0.34
MSH6-208ENST00000493177 NBPF26B4DH59 902 aa17.19■□□□□ 0.34
MSH6-208ENST00000493177 H0YIN7 160 aa17.19■□□□□ 0.34
MSH6-208ENST00000493177 TCERG1O14776 1098 aaKnown RBP17.19■□□□□ 0.34
MSH6-208ENST00000493177 HOXB7P09629 217 aa17.19■□□□□ 0.34
MSH6-208ENST00000493177 HDGFL1Q5TGJ6 251 aa17.19■□□□□ 0.34
MSH6-208ENST00000493177 NBPF10Q6P3W6 841 aaKnown RBP17.19■□□□□ 0.34
MSH6-208ENST00000493177 C2CD5Q86YS7 1000 aa17.19■□□□□ 0.34
MSH6-208ENST00000493177 NBPF15Q8N660 670 aa17.19■□□□□ 0.34
MSH6-208ENST00000493177 CNBD1Q8NA66 436 aa17.19■□□□□ 0.34
MSH6-208ENST00000493177 CLEC4GQ6UXB4 293 aa17.18■□□□□ 0.34
MSH6-208ENST00000493177 NBPF5PQ86XG9 351 aaPredicted RBP17.18■□□□□ 0.34
MSH6-208ENST00000493177 CCDC24Q8N4L8 307 aa17.18■□□□□ 0.34
MSH6-208ENST00000493177 CHMP4AQ9BY43 222 aa17.18■□□□□ 0.34
MSH6-208ENST00000493177 FAM177BA6PVY3 158 aa17.17■□□□□ 0.34
MSH6-208ENST00000493177 KCNA3P22001 575 aa17.17■□□□□ 0.34
MSH6-208ENST00000493177 PDE6BP35913 854 aa17.17■□□□□ 0.34
MSH6-208ENST00000493177 CCDC30Q5VVM6 783 aa17.17■□□□□ 0.34
MSH6-208ENST00000493177 PRR5LQ6MZQ0 368 aa17.17■□□□□ 0.34
MSH6-208ENST00000493177 BCL2L13Q9BXK5 485 aa17.17■□□□□ 0.34
MSH6-208ENST00000493177 NIP7Q9Y221 180 aaKnown RBP eCLIP17.17■□□□□ 0.34
MSH6-208ENST00000493177 ATP10DQ9P241 1426 aa17.16■□□□□ 0.34
MSH6-208ENST00000493177 GTF2E1P29083 439 aaPredicted RBP17.16■□□□□ 0.34
MSH6-208ENST00000493177 RARSP54136 660 aaKnown RBP17.16■□□□□ 0.34
MSH6-208ENST00000493177 ZNF526Q8TF50 670 aaPredicted RBP17.16■□□□□ 0.34
MSH6-208ENST00000493177 ZNF622Q969S3 477 aaKnown RBP eCLIP17.16■□□□□ 0.34
MSH6-208ENST00000493177 ZNF428Q96B54 188 aa17.16■□□□□ 0.34
MSH6-208ENST00000493177 STK31Q9BXU1 1019 aa17.16■□□□□ 0.34
MSH6-208ENST00000493177 SMC4Q9NTJ3 1288 aa17.16■□□□□ 0.34
MSH6-208ENST00000493177 SSH1Q8WYL5 1049 aa17.15■□□□□ 0.34
MSH6-208ENST00000493177 PDZRN3Q9UPQ7 1066 aa17.15■□□□□ 0.34
MSH6-208ENST00000493177 COL11A2P13942 1736 aaPredicted RBP17.15■□□□□ 0.34
MSH6-208ENST00000493177 ERBB4Q15303 1308 aa17.15■□□□□ 0.34
MSH6-208ENST00000493177 ALDH1L2Q3SY69 923 aa17.14■□□□□ 0.33
MSH6-208ENST00000493177 TTLL6Q8N841 843 aa17.14■□□□□ 0.33
MSH6-208ENST00000493177 BRIP1Q9BX63 1249 aa17.14■□□□□ 0.33
MSH6-208ENST00000493177 ZBTB3Q9H5J0 574 aa17.14■□□□□ 0.33
MSH6-208ENST00000493177 BCAR3O75815 825 aa17.13■□□□□ 0.33
MSH6-208ENST00000493177 HLFQ16534 295 aa17.13■□□□□ 0.33
MSH6-208ENST00000493177 TPTE2Q6XPS3 522 aa17.13■□□□□ 0.33
MSH6-208ENST00000493177 GPBP1L1Q9HC44 474 aaPredicted RBP17.13■□□□□ 0.33
MSH6-208ENST00000493177 CHPF2Q9P2E5 772 aa17.13■□□□□ 0.33
MSH6-208ENST00000493177 MAP3K15Q6ZN16 1313 aa17.13■□□□□ 0.33
MSH6-208ENST00000493177 CCDC88AQ3V6T2 1871 aa17.12■□□□□ 0.33
MSH6-208ENST00000493177 RGL2O15211 777 aa17.12■□□□□ 0.33
MSH6-208ENST00000493177 SLC4A2P04920 1241 aa17.12■□□□□ 0.33
MSH6-208ENST00000493177 TTLL7Q6ZT98 887 aa17.12■□□□□ 0.33
MSH6-208ENST00000493177 ZNF219Q9P2Y4 722 aaPredicted RBP17.12■□□□□ 0.33
MSH6-208ENST00000493177 ERVV-1B6SEH8 477 aa17.11■□□□□ 0.33
MSH6-208ENST00000493177 ANXA1P04083 346 aa17.11■□□□□ 0.33
MSH6-208ENST00000493177 MRPL50Q8N5N7 158 aaKnown RBP17.11■□□□□ 0.33
MSH6-208ENST00000493177 FRAT1Q92837 279 aaPredicted RBP17.11■□□□□ 0.33
MSH6-208ENST00000493177 NYXQ9GZU5 481 aa17.11■□□□□ 0.33
MSH6-208ENST00000493177 DBF4Q9UBU7 674 aaPredicted RBP17.11■□□□□ 0.33
MSH6-208ENST00000493177 SBF1O95248 1867 aa17.11■□□□□ 0.33
MSH6-208ENST00000493177 ANKRD36CQ5JPF3 1778 aa17.1■□□□□ 0.33
MSH6-208ENST00000493177 ARFGEF2Q9Y6D5 1785 aa17.1■□□□□ 0.33
MSH6-208ENST00000493177 GPTP24298 496 aa17.1■□□□□ 0.33
MSH6-208ENST00000493177 AIMP1Q12904 312 aaKnown RBP17.1■□□□□ 0.33
MSH6-208ENST00000493177 SUPT16HQ9Y5B9 1047 aaKnown RBP17.1■□□□□ 0.33
MSH6-208ENST00000493177 C9orf131Q5VYM1 1079 aa17.09■□□□□ 0.33
MSH6-208ENST00000493177 GOLGA6L2Q8N9W4 650 aaPredicted RBP17.09■□□□□ 0.33
MSH6-208ENST00000493177 CNKSR1Q969H4 720 aa17.09■□□□□ 0.33
MSH6-208ENST00000493177 DDX21Q9NR30 783 aaKnown RBP eCLIP17.09■□□□□ 0.33
Retrieved 100 of 20,778 RNA–protein pairs in 111.5 ms