RNA–Protein interactions for RNA: ENST00000492851.1

COL6A1-205, Transcript of collagen type VI alpha 1 chain, humanhuman

TSL 3

Gene COL6A1, Length 435 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A1-205ENST00000492851 SRGNP10124 158 aa16.4■□□□□ 0.22
COL6A1-205ENST00000492851 PIP4K2AP48426 406 aaPredicted RBP16.4■□□□□ 0.22
COL6A1-205ENST00000492851 EIF4A1P60842 406 aaKnown RBP16.4■□□□□ 0.22
COL6A1-205ENST00000492851 FSTL1Q12841 308 aa16.4■□□□□ 0.22
COL6A1-205ENST00000492851 DPY19L2Q6NUT2 758 aa16.4■□□□□ 0.22
COL6A1-205ENST00000492851 NIP7Q9Y221 180 aaKnown RBP eCLIP16.4■□□□□ 0.22
COL6A1-205ENST00000492851 SCN7AQ01118 1682 aa16.4■□□□□ 0.22
COL6A1-205ENST00000492851 GTF2E1P29083 439 aaPredicted RBP16.39■□□□□ 0.21
COL6A1-205ENST00000492851 RIPK4P57078 832 aa16.39■□□□□ 0.21
COL6A1-205ENST00000492851 GLTPD2A6NH11 291 aa16.38■□□□□ 0.21
COL6A1-205ENST00000492851 C21orf2O43822 256 aa16.38■□□□□ 0.21
COL6A1-205ENST00000492851 NPR1P16066 1061 aa16.38■□□□□ 0.21
COL6A1-205ENST00000492851 RASSF7Q02833 373 aa16.38■□□□□ 0.21
COL6A1-205ENST00000492851 DDX10Q13206 875 aaKnown RBP16.38■□□□□ 0.21
COL6A1-205ENST00000492851 KIF6Q6ZMV9 814 aa16.38■□□□□ 0.21
COL6A1-205ENST00000492851 CCDC24Q8N4L8 307 aa16.38■□□□□ 0.21
COL6A1-205ENST00000492851 NYXQ9GZU5 481 aa16.38■□□□□ 0.21
COL6A1-205ENST00000492851 RRAGCQ9HB90 399 aa16.38■□□□□ 0.21
COL6A1-205ENST00000492851 ERBB4Q15303 1308 aa16.38■□□□□ 0.21
COL6A1-205ENST00000492851 MYBBP1AQ9BQG0 1328 aaKnown RBP16.38■□□□□ 0.21
COL6A1-205ENST00000492851 KLRG2A4D1S0 409 aaPredicted RBP16.37■□□□□ 0.21
COL6A1-205ENST00000492851 VEGFAP15692 232 aaPredicted RBP16.37■□□□□ 0.21
COL6A1-205ENST00000492851 TSPYL4Q9UJ04 414 aa16.37■□□□□ 0.21
COL6A1-205ENST00000492851 LTBP3Q9NS15 1303 aa16.37■□□□□ 0.21
COL6A1-205ENST00000492851 DLEC1Q9Y238 1755 aa16.36■□□□□ 0.21
COL6A1-205ENST00000492851 NFKBIEO00221 500 aa16.36■□□□□ 0.21
COL6A1-205ENST00000492851 ALDH1B1P30837 517 aa16.36■□□□□ 0.21
COL6A1-205ENST00000492851 TAOK3Q9H2K8 898 aa16.36■□□□□ 0.21
COL6A1-205ENST00000492851 RRP7AQ9Y3A4 280 aaKnown RBP16.36■□□□□ 0.21
COL6A1-205ENST00000492851 TMPOP42166 694 aaKnown RBP16.35■□□□□ 0.21
COL6A1-205ENST00000492851 ERFEQ4G0M1 354 aa16.35■□□□□ 0.21
COL6A1-205ENST00000492851 PRPF40BQ6NWY9 871 aaKnown RBP16.35■□□□□ 0.21
COL6A1-205ENST00000492851 THUMPD2Q9BTF0 503 aaKnown RBP16.35■□□□□ 0.21
COL6A1-205ENST00000492851 MAP3K15Q6ZN16 1313 aa16.35■□□□□ 0.21
COL6A1-205ENST00000492851 WDR43Q15061 677 aaKnown RBP eCLIP16.34■□□□□ 0.21
COL6A1-205ENST00000492851 HLFQ16534 295 aa16.34■□□□□ 0.21
COL6A1-205ENST00000492851 NGEFQ8N5V2 710 aa16.34■□□□□ 0.21
COL6A1-205ENST00000492851 SMC1BQ8NDV3 1235 aa16.34■□□□□ 0.21
COL6A1-205ENST00000492851 ZNF219Q9P2Y4 722 aaPredicted RBP16.34■□□□□ 0.21
COL6A1-205ENST00000492851 MYL6BP14649 208 aa16.33■□□□□ 0.2
COL6A1-205ENST00000492851 BCORQ6W2J9 1755 aa16.33■□□□□ 0.2
COL6A1-205ENST00000492851 PRELPP51888 382 aa16.32■□□□□ 0.2
COL6A1-205ENST00000492851 CCDC93Q567U6 631 aa16.32■□□□□ 0.2
COL6A1-205ENST00000492851 RTKN2Q8IZC4 609 aa16.32■□□□□ 0.2
COL6A1-205ENST00000492851 RUNDC1Q96C34 613 aa16.32■□□□□ 0.2
COL6A1-205ENST00000492851 FAM177BA6PVY3 158 aa16.31■□□□□ 0.2
COL6A1-205ENST00000492851 GRIPAP1Q4V328 841 aa16.31■□□□□ 0.2
COL6A1-205ENST00000492851 PPP1R42Q7Z4L9 355 aa16.31■□□□□ 0.2
COL6A1-205ENST00000492851 C7orf43Q8WVR3 580 aa16.31■□□□□ 0.2
COL6A1-205ENST00000492851 SBF1O95248 1867 aa16.31■□□□□ 0.2
COL6A1-205ENST00000492851 PARP10Q53GL7 1025 aa16.3■□□□□ 0.2
COL6A1-205ENST00000492851 CC2D2BQ6DHV5 1058 aa16.3■□□□□ 0.2
COL6A1-205ENST00000492851 GIGYF2Q6Y7W6 1299 aaKnown RBP16.3■□□□□ 0.2
COL6A1-205ENST00000492851 ANKRD31Q8N7Z5 1873 aa16.3■□□□□ 0.2
COL6A1-205ENST00000492851 IBTKQ9P2D0 1353 aaPredicted RBP16.29■□□□□ 0.2
COL6A1-205ENST00000492851 KDM3BQ7LBC6 1761 aa16.29■□□□□ 0.2
COL6A1-205ENST00000492851 EIF2S2P20042 333 aaKnown RBP16.29■□□□□ 0.2
COL6A1-205ENST00000492851 TTLL7Q6ZT98 887 aa16.29■□□□□ 0.2
COL6A1-205ENST00000492851 ZNF34Q8IZ26 560 aa16.29■□□□□ 0.2
COL6A1-205ENST00000492851 ZBTB3Q9H5J0 574 aa16.29■□□□□ 0.2
COL6A1-205ENST00000492851 TNRC6CQ9HCJ0 1690 aaKnown RBP16.29■□□□□ 0.2
COL6A1-205ENST00000492851 LAMB4A4D0S4 1761 aa16.28■□□□□ 0.2
COL6A1-205ENST00000492851 DLG5Q8TDM6 1919 aa16.28■□□□□ 0.2
COL6A1-205ENST00000492851 FKBP4Q02790 459 aaKnown RBP eCLIP16.28■□□□□ 0.2
COL6A1-205ENST00000492851 NEUROD2Q15784 382 aa16.28■□□□□ 0.2
COL6A1-205ENST00000492851 CRY2Q49AN0 593 aa16.28■□□□□ 0.2
COL6A1-205ENST00000492851 HSP90AB3PQ58FF7 597 aa16.28■□□□□ 0.2
COL6A1-205ENST00000492851 DNAJC5GQ8N7S2 189 aa16.28■□□□□ 0.2
COL6A1-205ENST00000492851 RPGRQ92834 1020 aaKnown RBP16.28■□□□□ 0.2
COL6A1-205ENST00000492851 CEP350Q5VT06 3117 aa16.28■□□□□ 0.2
COL6A1-205ENST00000492851 CHL1O00533 1208 aa16.27■□□□□ 0.2
COL6A1-205ENST00000492851 HOXA10P31260 410 aaPredicted RBP16.27■□□□□ 0.2
COL6A1-205ENST00000492851 TMX4Q9H1E5 349 aaPredicted RBP16.27■□□□□ 0.2
COL6A1-205ENST00000492851 IQCA1LA6NCM1 817 aa16.26■□□□□ 0.19
COL6A1-205ENST00000492851 GPTP24298 496 aa16.26■□□□□ 0.19
COL6A1-205ENST00000492851 SUSD4Q5VX71 490 aa16.26■□□□□ 0.19
COL6A1-205ENST00000492851 NUTM1Q86Y26 1132 aa16.26■□□□□ 0.19
COL6A1-205ENST00000492851 CCDC146Q8IYE0 955 aa16.26■□□□□ 0.19
COL6A1-205ENST00000492851 RBM17Q96I25 401 aaKnown RBP16.26■□□□□ 0.19
COL6A1-205ENST00000492851 NLRP3Q96P20 1036 aa16.26■□□□□ 0.19
COL6A1-205ENST00000492851 PRKRIP1Q9H875 184 aaPredicted RBP16.26■□□□□ 0.19
COL6A1-205ENST00000492851 ADAMTS8Q9UP79 889 aa16.26■□□□□ 0.19
COL6A1-205ENST00000492851 RIC1Q4ADV7 1423 aa16.26■□□□□ 0.19
COL6A1-205ENST00000492851 COL11A2P13942 1736 aaPredicted RBP16.25■□□□□ 0.19
COL6A1-205ENST00000492851 RNF123Q5XPI4 1314 aa16.25■□□□□ 0.19
COL6A1-205ENST00000492851 HOXB7P09629 217 aa16.25■□□□□ 0.19
COL6A1-205ENST00000492851 PDIA6Q15084 440 aa16.25■□□□□ 0.19
COL6A1-205ENST00000492851 UTP14AQ9BVJ6 771 aaKnown RBP16.25■□□□□ 0.19
COL6A1-205ENST00000492851 POTECB2RU33 542 aa16.24■□□□□ 0.19
COL6A1-205ENST00000492851 CALD1Q05682 793 aaKnown RBP16.24■□□□□ 0.19
COL6A1-205ENST00000492851 SLC10A5Q5PT55 438 aa16.24■□□□□ 0.19
COL6A1-205ENST00000492851 LRP10Q7Z4F1 713 aa16.24■□□□□ 0.19
COL6A1-205ENST00000492851 CRAMP1Q96RY5 1269 aa16.24■□□□□ 0.19
COL6A1-205ENST00000492851 PSMD1Q99460 953 aa16.24■□□□□ 0.19
COL6A1-205ENST00000492851 DDX21Q9NR30 783 aaKnown RBP eCLIP16.24■□□□□ 0.19
COL6A1-205ENST00000492851 TRIM35Q9UPQ4 493 aa16.24■□□□□ 0.19
COL6A1-205ENST00000492851 LAS1LQ9Y4W2 734 aaKnown RBP16.24■□□□□ 0.19
COL6A1-205ENST00000492851 FER1L6Q2WGJ9 1857 aa16.24■□□□□ 0.19
COL6A1-205ENST00000492851 UBN2Q6ZU65 1347 aa16.23■□□□□ 0.19
COL6A1-205ENST00000492851 DDNO94850 711 aaPredicted RBP16.23■□□□□ 0.19
Retrieved 100 of 20,778 RNA–protein pairs in 30.4 ms