RNA–Protein interactions for RNA: ENST00000492357.1

USP54-214, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 3

Gene USP54, Length 353 nt, Biotype processed transcript, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-214ENST00000492357 PI4KAP2A4QPH2 592 aa12.17□□□□□ -0.46
USP54-214ENST00000492357 TCERG1O14776 1098 aaKnown RBP12.17□□□□□ -0.46
USP54-214ENST00000492357 TRIM28Q13263 835 aaKnown RBP12.17□□□□□ -0.46
USP54-214ENST00000492357 PI4KAP1Q8N8J0 262 aa12.17□□□□□ -0.46
USP54-214ENST00000492357 TNS1Q9HBL0 1735 aaKnown RBP12.17□□□□□ -0.46
USP54-214ENST00000492357 COL15A1P39059 1388 aa12.17□□□□□ -0.46
USP54-214ENST00000492357 EIF5P55010 431 aaKnown RBP12.16□□□□□ -0.46
USP54-214ENST00000492357 IRX6P78412 446 aaPredicted RBP12.16□□□□□ -0.46
USP54-214ENST00000492357 PROSER3Q2NL68 480 aa12.16□□□□□ -0.46
USP54-214ENST00000492357 BEND3Q5T5X7 828 aa12.16□□□□□ -0.46
USP54-214ENST00000492357 COPS6Q7L5N1 327 aa12.16□□□□□ -0.46
USP54-214ENST00000492357 XAGE3Q8WTP9 111 aa12.16□□□□□ -0.46
USP54-214ENST00000492357 NECTIN2Q92692 538 aa12.16□□□□□ -0.46
USP54-214ENST00000492357 CCDC136Q96JN2 1154 aa12.16□□□□□ -0.46
USP54-214ENST00000492357 METTL22Q9BUU2 404 aaPredicted RBP12.16□□□□□ -0.46
USP54-214ENST00000492357 UTYO14607 1347 aa12.15□□□□□ -0.46
USP54-214ENST00000492357 A1BGP04217 495 aa12.15□□□□□ -0.46
USP54-214ENST00000492357 MYL6BP14649 208 aa12.15□□□□□ -0.46
USP54-214ENST00000492357 CRKLP46109 303 aaKnown RBP12.15□□□□□ -0.46
USP54-214ENST00000492357 KIF6Q6ZMV9 814 aa12.15□□□□□ -0.46
USP54-214ENST00000492357 RIC3Q7Z5B4 369 aa12.15□□□□□ -0.46
USP54-214ENST00000492357 CCDC125Q86Z20 511 aa12.15□□□□□ -0.46
USP54-214ENST00000492357 RPAP2Q8IXW5 612 aaPredicted RBP12.15□□□□□ -0.46
USP54-214ENST00000492357 CCNL1Q9UK58 526 aaPredicted RBP12.15□□□□□ -0.46
USP54-214ENST00000492357 MAP3K2Q9Y2U5 619 aa12.15□□□□□ -0.46
USP54-214ENST00000492357 ANKRD36CQ5JPF3 1778 aa12.15□□□□□ -0.46
USP54-214ENST00000492357 C4BP0C0L5 1744 aa12.14□□□□□ -0.47
USP54-214ENST00000492357 MAP3K15Q6ZN16 1313 aa12.14□□□□□ -0.47
USP54-214ENST00000492357 HDAC1Q13547 482 aaPredicted RBP12.14□□□□□ -0.47
USP54-214ENST00000492357 ITPK1Q13572 414 aa12.14□□□□□ -0.47
USP54-214ENST00000492357 INTS5Q6P9B9 1019 aaKnown RBP12.14□□□□□ -0.47
USP54-214ENST00000492357 CLEC4GQ6UXB4 293 aa12.14□□□□□ -0.47
USP54-214ENST00000492357 BCORQ6W2J9 1755 aa12.13□□□□□ -0.47
USP54-214ENST00000492357 MYH14Q7Z406 1995 aaKnown RBP12.13□□□□□ -0.47
USP54-214ENST00000492357 RPS6KA4O75676 772 aa12.13□□□□□ -0.47
USP54-214ENST00000492357 SLC4A10Q6U841 1118 aa12.13□□□□□ -0.47
USP54-214ENST00000492357 GIGYF2Q6Y7W6 1299 aaKnown RBP12.13□□□□□ -0.47
USP54-214ENST00000492357 CENPQQ7L2Z9 268 aaPredicted RBP12.13□□□□□ -0.47
USP54-214ENST00000492357 CCDC191Q8NCU4 936 aa12.13□□□□□ -0.47
USP54-214ENST00000492357 RWDD1Q9H446 243 aaPredicted RBP12.13□□□□□ -0.47
USP54-214ENST00000492357 TNNQ9UQP3 1299 aa12.13□□□□□ -0.47
USP54-214ENST00000492357 ZBTB1Q9Y2K1 713 aa12.13□□□□□ -0.47
USP54-214ENST00000492357 SCN7AQ01118 1682 aa12.13□□□□□ -0.47
USP54-214ENST00000492357 F6X3S4 739 aa12.12□□□□□ -0.47
USP54-214ENST00000492357 ANXA1P04083 346 aa12.12□□□□□ -0.47
USP54-214ENST00000492357 GNAI2P04899 355 aa12.12□□□□□ -0.47
USP54-214ENST00000492357 ILDR1Q86SU0 546 aaPredicted RBP12.12□□□□□ -0.47
USP54-214ENST00000492357 ZNF652Q9Y2D9 606 aa12.12□□□□□ -0.47
USP54-214ENST00000492357 HMMRO75330 724 aa12.11□□□□□ -0.47
USP54-214ENST00000492357 TRIM37O94972 964 aa12.11□□□□□ -0.47
USP54-214ENST00000492357 UBTFL1P0CB47 393 aaPredicted RBP12.11□□□□□ -0.47
USP54-214ENST00000492357 HSP90B1P14625 803 aaKnown RBP12.11□□□□□ -0.47
USP54-214ENST00000492357 AIMP1Q12904 312 aaKnown RBP12.11□□□□□ -0.47
USP54-214ENST00000492357 TCIRG1Q13488 830 aa12.11□□□□□ -0.47
USP54-214ENST00000492357 FAM182BQ5T319 152 aa12.11□□□□□ -0.47
USP54-214ENST00000492357 FLAD1Q8NFF5 587 aa12.11□□□□□ -0.47
USP54-214ENST00000492357 USP44Q9H0E7 712 aa12.11□□□□□ -0.47
USP54-214ENST00000492357 NUP98P52948 1817 aa12.11□□□□□ -0.47
USP54-214ENST00000492357 AFDNP55196 1824 aaKnown RBP12.11□□□□□ -0.47
USP54-214ENST00000492357 NEURL1BA8MQ27 555 aa12.1□□□□□ -0.47
USP54-214ENST00000492357 GRM8O00222 908 aa12.1□□□□□ -0.47
USP54-214ENST00000492357 SSFA2P28290 1259 aa12.1□□□□□ -0.47
USP54-214ENST00000492357 MTX1Q13505 466 aa12.1□□□□□ -0.47
USP54-214ENST00000492357 GCKRQ14397 625 aa12.1□□□□□ -0.47
USP54-214ENST00000492357 PARP10Q53GL7 1025 aa12.1□□□□□ -0.47
USP54-214ENST00000492357 DZIP3Q86Y13 1208 aaKnown RBP12.1□□□□□ -0.47
USP54-214ENST00000492357 PELP1Q8IZL8 1130 aaKnown RBP12.1□□□□□ -0.47
USP54-214ENST00000492357 LINC00116Q8NCU8 138 aa12.1□□□□□ -0.47
USP54-214ENST00000492357 AK7Q96M32 723 aa12.1□□□□□ -0.47
USP54-214ENST00000492357 ISCA1Q9BUE6 129 aa12.1□□□□□ -0.47
USP54-214ENST00000492357 RTCBQ9Y3I0 505 aaKnown RBP12.1□□□□□ -0.47
USP54-214ENST00000492357 UBR3Q6ZT12 1888 aa12.1□□□□□ -0.47
USP54-214ENST00000492357 KDM2BQ8NHM5 1336 aa12.1□□□□□ -0.47
USP54-214ENST00000492357 QSER1Q2KHR3 1735 aa12.09□□□□□ -0.47
USP54-214ENST00000492357 IGKV5-2P06315 115 aa12.09□□□□□ -0.47
USP54-214ENST00000492357 TXNRD1Q16881 649 aa12.09□□□□□ -0.47
USP54-214ENST00000492357 TTLL7Q6ZT98 887 aa12.09□□□□□ -0.47
USP54-214ENST00000492357 PTF1AQ7RTS3 328 aa12.09□□□□□ -0.47
USP54-214ENST00000492357 ANKRD44Q8N8A2 993 aa12.09□□□□□ -0.47
USP54-214ENST00000492357 GCC1Q96CN9 775 aa12.09□□□□□ -0.47
USP54-214ENST00000492357 CWC25Q9NXE8 425 aaPredicted RBP12.09□□□□□ -0.47
USP54-214ENST00000492357 C9orf78Q9NZ63 289 aaPredicted RBP12.09□□□□□ -0.47
USP54-214ENST00000492357 APBA3O96018 575 aa12.08□□□□□ -0.48
USP54-214ENST00000492357 ATXN8OSP0DMR3 200 aa12.08□□□□□ -0.48
USP54-214ENST00000492357 SAMD1Q6SPF0 538 aaPredicted RBP12.08□□□□□ -0.48
USP54-214ENST00000492357 MEIS3Q99687 375 aa12.08□□□□□ -0.48
USP54-214ENST00000492357 MYD88Q99836 296 aa12.08□□□□□ -0.48
USP54-214ENST00000492357 NARFQ9UHQ1 456 aa12.08□□□□□ -0.48
USP54-214ENST00000492357 CDHR2Q9BYE9 1310 aa12.08□□□□□ -0.48
USP54-214ENST00000492357 CAMTA2O94983 1202 aa12.07□□□□□ -0.48
USP54-214ENST00000492357 SF3B2Q13435 895 aaKnown RBP12.07□□□□□ -0.48
USP54-214ENST00000492357 SMC5Q8IY18 1101 aa12.07□□□□□ -0.48
USP54-214ENST00000492357 ZNF34Q8IZ26 560 aa12.07□□□□□ -0.48
USP54-214ENST00000492357 RNF39Q9H2S5 420 aa12.07□□□□□ -0.48
USP54-214ENST00000492357 PCDHB15Q9Y5E8 787 aa12.07□□□□□ -0.48
USP54-214ENST00000492357 C4AP0C0L4 1744 aa12.06□□□□□ -0.48
USP54-214ENST00000492357 H7C1W4 665 aa12.06□□□□□ -0.48
USP54-214ENST00000492357 PCCAP05165 728 aaPredicted RBP12.06□□□□□ -0.48
USP54-214ENST00000492357 BAG6P46379 1132 aa12.06□□□□□ -0.48
USP54-214ENST00000492357 ATP8B2P98198 1209 aa12.06□□□□□ -0.48
Retrieved 100 of 20,778 RNA–protein pairs in 24.4 ms